Rorug06G0090400

Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH ubiquinone oxidoreductase complex (complex I)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002372
Physical Location & Seq
Reverse (-)
12014638 .. 12017343
2706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0090400.1

Sequence Viewer

Length: 1119 bp
ATGTGGGAGACTAGTGCTTGTTCAGAAAAGGAAAAACCAGTGCTCAACATGAATGTGGAGGACCAATGCTTCGAGCATTTCTCAGACCAAGACGAAGAAGACGACGATTTTACCATTTCGCAAATTTCTTCTCTCCGTAGACCACAATTTCACCCTTCATTCTCTCCATCGGTAGAGCAGAGGAAGCTATTGGAGACCCAGAAAAAGGGGTTCAAGACTCGGACAAGTCCTTTCAGTCCAACCCATGACACCCAACGAAAAGTTTCTGGTGACCATCAGAAGCCTCAAGGCTGTAAACGGAAGAGAACCATGTTCGAGAATGTTGACAATCCTGAAGGTTCTTCAGTCAAAATCCAAGTTGAAGAGATCAAAGCAAAAATAGGAGTGGAAGCCCCCATCTTTGTGAAGGCTATGCAGCCATCAAATGTTGCCAGTGGCTTTTTGTTGGCATTGCCTAAGCAATTCTGCCATTCGCATTTGCCATCCCATGATGCAACAATAATTTTAGAAGATGAAAGCGGGGAGAAATACAGAACAAAGTTTATTGTGCAAAAGGACAAGAGCATACTGAGTAGTGGATGGAGAAGGTTTTGCTTTGCTAACAAGTTAGTTGTTGGTGATGTTTTAGTATTCCACTTGGTCAGGCCTTTAAAGTTCAAGGTGTACATAATGGGAACACATAGTTTAGCTGAAGTGGAAGCGGCTTTCAGCCTCTTGAAGTTCGGTTCCTGCACCAAACAAACAGCTTTTGAGGAAATACGTCCAATGCCTCTTCCAAAAGATGTCTGTCAAGTTCATATTGATGAGAAGACAAGTTTGACATTAGATTCTAATGCTGCACTGATAGATGAGGAGTACAATGAAGAATTTGGCTTCAACATTTTAGAAGATGTTGGACTTCCAATACCAGCTACTGATTTTGGTGATGTTGAAAATACCAAGGATTTTACCATTCTCGTGAATGGTGTGAGTATAAATTCTTGTCTCTCCGAAGAGATCAGAAATAGGTATTATGATCTATGCTGCTCGCAAAGGTCATTTCTGCACAACCATTTCCTCGAAAGTATTAATGGCTTTCCACCCCCCATGGTGCTTATGTATTGTGGGAGAAGACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_28

Protein Analysis

372

Amino Acids

42.34

Weight (kDa)

5.79

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 134 - 223 1.5e-19 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AciI CCGC 2 cut(s) 519, 701
AcsI RAATTY 3 cut(s) 123, 866, 976
AcuI CTGAAG 3 cut(s) 327, 354, 711
AfaI GTAC 2 cut(s) 665, 857
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 6 cut(s) 214, 362, 658, 718, 877, 932
AhlI ACTAGT 1 cut(s) 11
AluBI AGCT 4 cut(s) 187, 689, 746, 911
AluI AGCT 4 cut(s) 187, 689, 746, 911
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 3 cut(s) 2, 188, 989
AlwNI CAGNNNCTG 1 cut(s) 914
AoxI GGCC 1 cut(s) 644
ApeKI GCWGC 3 cut(s) 415, 836, 1023
ApoI RAATTY 3 cut(s) 123, 866, 976
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AseI ATTAAT 1 cut(s) 1068
Asp700I GAANNNNTTC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 4 cut(s) 143, 281, 629, 935
AvaII GGWCC 1 cut(s) 61
BauI CACGAG 1 cut(s) 956
BbsI GAAGAC 2 cut(s) 105, 815
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 3 cut(s) 427, 823, 1010
BccI CCATC 6 cut(s) 175, 282, 404, 427, 490, 573
BcoDI GTCTC 3 cut(s) 2, 188, 989
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BisI GCNGC 4 cut(s) 416, 702, 837, 1024
BlsI GCNGC 4 cut(s) 417, 703, 838, 1025
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 727
BmsI GCATC 1 cut(s) 481
BpiI GAAGAC 2 cut(s) 105, 815
BplI GAGNNNNNCTC 2 cut(s) 65, 97
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 939, 1086
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 38, 432
Bse3DI GCAATG 1 cut(s) 449
BseDI CCNNGG 2 cut(s) 939, 1086
BseGI GGATG 2 cut(s) 482, 584
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 449
BseMII CTCAG 2 cut(s) 96, 560
BseNI ACTGG 2 cut(s) 38, 432
BseRI GAGGAG 1 cut(s) 866
BseXI GCAGC 3 cut(s) 427, 823, 1010
BsgI GTGCAG 3 cut(s) 715, 822, 1028
BshFI GGCC 1 cut(s) 646
BsiHKAI GWGCWC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 3 cut(s) 2, 188, 989
BsnI GGCC 1 cut(s) 646
Bso31I GGTCTC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 45
Bsp1407I TGTACA 1 cut(s) 663
Bsp143I GATC 3 cut(s) 366, 996, 1015
Bsp19I CCATGG 1 cut(s) 1086
BspACI CCGC 2 cut(s) 519, 701
BspANI GGCC 1 cut(s) 646
BspCNI CTCAG 2 cut(s) 95, 561
BspLI GGNNCC 1 cut(s) 727
BspTNI GGTCTC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 449
BsrGI TGTACA 1 cut(s) 663
BsrI ACTGG 2 cut(s) 38, 432
BssECI CCNNGG 2 cut(s) 939, 1086
BssMI GATC 3 cut(s) 366, 996, 1015
BssSI CACGAG 1 cut(s) 956
BssT1I CCWWGG 2 cut(s) 939, 1086
Bst2BI CACGAG 1 cut(s) 956
Bst6I CTCTTC 4 cut(s) 296, 357, 777, 987
BstAUI TGTACA 1 cut(s) 663
BstC8I GCNNGC 1 cut(s) 1028
BstDEI CTNAG 3 cut(s) 82, 456, 569
BstDSI CCRYGG 1 cut(s) 1086
BstEII GGTNACC 1 cut(s) 269
BstF5I GGATG 2 cut(s) 482, 584
BstKTI GATC 3 cut(s) 369, 999, 1018
BstMAI GTCTC 3 cut(s) 2, 188, 989
BstMBI GATC 3 cut(s) 366, 996, 1015
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstPI GGTNACC 1 cut(s) 269
BstV1I GCAGC 3 cut(s) 427, 823, 1010
BstV2I GAAGAC 2 cut(s) 105, 815
BsuRI GGCC 1 cut(s) 646
BtgI CCRYGG 1 cut(s) 1086
BtsCI GGATG 2 cut(s) 482, 584
BtsIMutI CAGTG 3 cut(s) 45, 439, 839
Cac8I GCNNGC 1 cut(s) 1028
CaiI CAGNNNCTG 1 cut(s) 914
Cfr13I GGNCC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 664, 856
CviAII CATG 5 cut(s) 49, 245, 310, 488, 1087
CviQI GTAC 2 cut(s) 664, 856
DdeI CTNAG 3 cut(s) 82, 456, 569
DpnI GATC 3 cut(s) 368, 998, 1017
DpnII GATC 3 cut(s) 366, 996, 1015
DraI TTTAAA 1 cut(s) 651
Eam1104I CTCTTC 4 cut(s) 296, 357, 777, 987
EarI CTCTTC 4 cut(s) 296, 357, 777, 987
Eco130I CCWWGG 2 cut(s) 939, 1086
Eco147I AGGCCT 1 cut(s) 646
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 61
Eco57I CTGAAG 3 cut(s) 327, 354, 711
Eco91I GGTNACC 1 cut(s) 269
EcoO65I GGTNACC 1 cut(s) 269
EcoT14I CCWWGG 2 cut(s) 939, 1086
ErhI CCWWGG 2 cut(s) 939, 1086
FaeI CATG 5 cut(s) 52, 248, 313, 491, 1090
FatI CATG 5 cut(s) 48, 244, 309, 487, 1086
FauI CCCGC 1 cut(s) 512
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 4 cut(s) 416, 702, 837, 1024
FokI GGATG 2 cut(s) 469, 591
Fsp4HI GCNGC 4 cut(s) 416, 702, 837, 1024
FspBI CTAG 1 cut(s) 12
GluI GCNGC 4 cut(s) 416, 702, 837, 1024
HaeIII GGCC 1 cut(s) 646
Hin1II CATG 5 cut(s) 52, 248, 313, 491, 1090
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 2 cut(s) 217, 827
HphI GGTGA 4 cut(s) 143, 281, 629, 935
Hpy166II GTNNAC 4 cut(s) 140, 296, 325, 664
Hpy188I TCNGA 6 cut(s) 25, 85, 222, 279, 991, 1001
Hpy188III TCNNGA 5 cut(s) 214, 316, 332, 715, 958
Hpy8I GTNNAC 4 cut(s) 140, 296, 325, 664
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 4 cut(s) 165, 329, 400, 579
HpyCH4IV ACGT 1 cut(s) 760
HpyCH4V TGCA 6 cut(s) 415, 494, 550, 732, 839, 1045
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 3 cut(s) 82, 456, 569
HpySE526I ACGT 1 cut(s) 760
Hsp92II CATG 5 cut(s) 52, 248, 313, 491, 1090
Kzo9I GATC 3 cut(s) 366, 996, 1015
LpnPI CCDG 8 cut(s) 51, 212, 252, 345, 445, 628, 742, 921
Lsp1109I GCAGC 3 cut(s) 427, 823, 1010
LweI GCATC 1 cut(s) 481
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 760
MaeIII GTNAC 1 cut(s) 269
MalI GATC 3 cut(s) 368, 998, 1017
MboI GATC 3 cut(s) 366, 996, 1015
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 6 cut(s) 123, 146, 461, 501, 866, 976
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 2 cut(s) 263, 874
MnlI CCTC 8 cut(s) 52, 174, 294, 722, 745, 780, 844, 1067
MroXI GAANNNNTTC 1 cut(s) 262
MseI TTAA 2 cut(s) 650, 1068
MslI CAYNNNNRTG 4 cut(s) 53, 401, 801, 956
MwoI GCNNNNNNNGC 1 cut(s) 184
NcoI CCATGG 1 cut(s) 1086
NdeII GATC 3 cut(s) 366, 996, 1015
NlaIII CATG 5 cut(s) 52, 248, 313, 491, 1090
NlaIV GGNNCC 1 cut(s) 727
NmuCI GTSAC 1 cut(s) 269
PceI AGGCCT 1 cut(s) 646
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 827
PkrI GCNGC 4 cut(s) 417, 703, 838, 1025
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PshBI ATTAAT 1 cut(s) 1068
PspEI GGTNACC 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 727
PspPI GGNCC 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 914
RsaI GTAC 2 cut(s) 665, 857
RsaNI GTAC 2 cut(s) 664, 856
RseI CAYNNNNRTG 4 cut(s) 53, 401, 801, 956
SaqAI TTAA 2 cut(s) 650, 1068
SatI GCNGC 4 cut(s) 416, 702, 837, 1024
Sau3AI GATC 3 cut(s) 366, 996, 1015
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 1 cut(s) 211
SduI GDGCHC 1 cut(s) 45
SfaNI GCATC 1 cut(s) 481
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 4 cut(s) 53, 401, 801, 956
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 6 cut(s) 123, 146, 461, 501, 866, 976
SseBI AGGCCT 1 cut(s) 646
SsiI CCGC 2 cut(s) 519, 701
SspMI CTAG 1 cut(s) 12
StuI AGGCCT 1 cut(s) 646
StyI CCWWGG 2 cut(s) 939, 1086
TaiI ACGT 1 cut(s) 763
TaqI TCGA 3 cut(s) 72, 315, 1059
TasI AATT 6 cut(s) 123, 146, 461, 501, 866, 976
TatI WGTACW 2 cut(s) 663, 855
TauI GCSGC 1 cut(s) 704
TfiI GAWTC 1 cut(s) 827
Tru1I TTAA 2 cut(s) 650, 1068
Tru9I TTAA 2 cut(s) 650, 1068
TscAI CASTG 3 cut(s) 45, 439, 846
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 3 cut(s) 415, 836, 1023
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 5 cut(s) 65, 147, 528, 785, 876
TspGWI ACGGA 2 cut(s) 125, 313
TspRI CASTG 3 cut(s) 45, 439, 846
VpaK11BI GGWCC 1 cut(s) 61
VspI ATTAAT 1 cut(s) 1068
XapI RAATTY 3 cut(s) 123, 866, 976
XmiI GTMKAC 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 262
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.