AT5G11890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011853
Physical Location & Seq
Forward (+)
3831500 .. 3833151
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11890.1

Sequence Viewer

Length: 864 bp
ATGACTGACCGAGTCTTCCCAGCTTCCAAACCACCAACCGCCACTAATGGAGCTCCACCAGTTGGTTCCATACCACCTCCTCCAGCTCCGGCGACTGTAACCAGCAACGGAACAACAAACGGAATGGCTAATCAGAAACCTCAAGTCTACATTCCAGCTAACCGTCCGGTTTACCGTCCACAGCCTTACAGTCGCCGTCATCACCACCAATCTCGACCAAGCTGCCGACGAATTTGCTGTTGTTGCTGTTTCTGGTCGATTCTGATAATTCTGATCTTAGCTCTCATGACTGCAATCGCCGCCACCGCGATGTACGTGATCTACCACCCTCGTCCGCCGTCGTTCTCCGTCCCGTCAATAAGAATCAGCCGCGTGAACCTAACAACCTCCTCTGATTCCTCCGTCTCTCATCTCTCTTCCTTCTTCAACTTCACTCTAATCTCAGAGAATCCAAACCAACACCTCTCTTTCTCTTACGATCCTTTCACCGTCACCGTTAATTCAGCTAAATCCGGTACGATGCTCGGTAACGGAACTGTTCCTGCTTTCTTCAGCGATAACGGTAACAAAACTTCGTTTCACGGCGTGATCGCTACGTCTACAGCGGCGCGTGAGTTAGATCCGGATGAAGCTAAGCATCTGAGATCAGATCTGACGCGCGCGCGTGTAGGATATGAGATCGAGATGAGAACTAAAGTGAAGATGATAATGGGGAAGCTGAAGAGTGAAGGAGTAGAGATCAAAGTGACATGTGAAGGATTTGAAGGAACTATACCAAAAGGTAAAACTCCAATTGTAGCTACTTCTAAAAAAACTAAGTGTAAGTCTGATCTTAGTGTCAAGGTCTGGAAATGGAGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

287

Amino Acids

31.44

Weight (kDa)

9.76

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 62
AccI GTMKAC 2 cut(s) 147, 599
AccII CGCG 7 cut(s) 308, 372, 610, 658, 660, 662, 664
AccIII TCCGGA 1 cut(s) 622
AciI CCGC 6 cut(s) 39, 300, 306, 335, 370, 605
AclWI GGATC 2 cut(s) 473, 614
AcsI RAATTY 1 cut(s) 231
AcuI CTGAAG 2 cut(s) 535, 740
AdeI CACNNNGTG 1 cut(s) 586
AfaI GTAC 2 cut(s) 314, 517
AfiI CCNNNNNNNGG 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 749
AgsI TTSAA 2 cut(s) 427, 764
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 2 cut(s) 473, 614
Aor13HI TCCGGA 1 cut(s) 622
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 231
AspLEI GCGC 4 cut(s) 610, 660, 662, 664
AsuHPI GGTGA 3 cut(s) 194, 478, 484
BanII GRGCYC 1 cut(s) 55
BarI GAAGNNNNNNTAC 4 cut(s) 556, 588, 756, 788
BbsI GAAGAC 1 cut(s) 7
Bbv12I GWGCWC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 209
BceAI ACGGC 3 cut(s) 180, 322, 598
BcgI CGANNNNNNTGC 4 cut(s) 204, 216, 238, 250
BcoDI GTCTC 1 cut(s) 409
BfaI CTAG 1 cut(s) 862
BfmI CTRYAG 1 cut(s) 600
BglII AGATCT 1 cut(s) 649
BisI GCNGC 4 cut(s) 223, 300, 370, 606
BlpI GCTNAGC 1 cut(s) 633
BlsI GCNGC 4 cut(s) 224, 301, 371, 607
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 2 cut(s) 510, 646
BpiI GAAGAC 1 cut(s) 7
BpmI CTGGAG 1 cut(s) 66
Bpu1102I GCTNAGC 1 cut(s) 633
BpuEI CTTGAG 1 cut(s) 126
BsaAI YACGTR 1 cut(s) 316
BsaWI WCCGGW 3 cut(s) 166, 512, 622
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 59
BseAI TCCGGA 1 cut(s) 622
BseGI GGATG 1 cut(s) 631
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMII CTCAG 2 cut(s) 456, 632
BseNI ACTGG 1 cut(s) 59
BsePI GCGCGC 2 cut(s) 658, 660
BseRI GAGGAG 2 cut(s) 69, 379
BseXI GCAGC 1 cut(s) 209
BseYI CCCAGC 1 cut(s) 19
Bsh1236I CGCG 7 cut(s) 308, 372, 610, 658, 660, 662, 664
BsiHKAI GWGCWC 1 cut(s) 55
BsiSI CCGG 4 cut(s) 89, 167, 513, 623
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 409
BsmBI CGTCTC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 55
Bsp13I TCCGGA 1 cut(s) 622
Bsp1720I GCTNAGC 1 cut(s) 633
BspACI CCGC 6 cut(s) 39, 300, 306, 335, 370, 605
BspCNI CTCAG 2 cut(s) 455, 633
BspEI TCCGGA 1 cut(s) 622
BspFNI CGCG 7 cut(s) 308, 372, 610, 658, 660, 662, 664
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 2 cut(s) 473, 614
BsrI ACTGG 1 cut(s) 59
BssHII GCGCGC 2 cut(s) 658, 660
Bst4CI ACNGT 8 cut(s) 97, 164, 176, 191, 490, 496, 538, 563
Bst6I CTCTTC 2 cut(s) 421, 716
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 660, 662
BstDEI CTNAG 6 cut(s) 277, 442, 633, 641, 816, 833
BstF5I GGATG 1 cut(s) 631
BstFNI CGCG 7 cut(s) 308, 372, 610, 658, 660, 662, 664
BstHHI GCGC 4 cut(s) 610, 660, 662, 664
BstMAI GTCTC 1 cut(s) 409
BstMWI GCNNNNNNNGC 3 cut(s) 243, 299, 305
BstNSI RCATGY 1 cut(s) 753
BstSFI CTRYAG 1 cut(s) 600
BstUI CGCG 7 cut(s) 308, 372, 610, 658, 660, 662, 664
BstV1I GCAGC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 7
BstX2I RGATCY 2 cut(s) 619, 649
BstYI RGATCY 2 cut(s) 619, 649
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 1 cut(s) 631
Cac8I GCNNGC 2 cut(s) 660, 662
CciI TCATGA 1 cut(s) 285
CfoI GCGC 4 cut(s) 610, 660, 662, 664
CseI GACGC 1 cut(s) 664
Csp6I GTAC 2 cut(s) 313, 516
CviAII CATG 2 cut(s) 286, 750
CviQI GTAC 2 cut(s) 313, 516
DdeI CTNAG 6 cut(s) 277, 442, 633, 641, 816, 833
DraIII CACNNNGTG 1 cut(s) 586
Eam1104I CTCTTC 2 cut(s) 421, 716
EarI CTCTTC 2 cut(s) 421, 716
EciI GGCGGA 1 cut(s) 324
Ecl136II GAGCTC 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 53
Eco57I CTGAAG 2 cut(s) 535, 740
EcoICRI GAGCTC 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 409
FaeI CATG 2 cut(s) 289, 753
FaiI YATR 5 cut(s) 71, 287, 675, 751, 773
FaqI GGGAC 1 cut(s) 335
FatI CATG 2 cut(s) 285, 749
FblI GTMKAC 2 cut(s) 147, 599
Fnu4HI GCNGC 4 cut(s) 223, 300, 370, 606
FokI GGATG 1 cut(s) 638
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 4 cut(s) 223, 300, 370, 606
FspBI CTAG 1 cut(s) 862
GlaI GCGC 4 cut(s) 609, 659, 661, 663
GluI GCNGC 4 cut(s) 223, 300, 370, 606
GsaI CCCAGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 66
HapII CCGG 4 cut(s) 89, 167, 513, 623
HgaI GACGC 1 cut(s) 664
HhaI GCGC 4 cut(s) 610, 660, 662, 664
Hin1II CATG 2 cut(s) 289, 753
Hin6I GCGC 4 cut(s) 608, 658, 660, 662
HinP1I GCGC 4 cut(s) 608, 658, 660, 662
HinfI GANTC 5 cut(s) 12, 259, 363, 395, 448
HpaII CCGG 4 cut(s) 89, 167, 513, 623
HphI GGTGA 3 cut(s) 194, 478, 484
Hpy166II GTNNAC 5 cut(s) 148, 172, 179, 376, 600
Hpy188I TCNGA 9 cut(s) 135, 264, 273, 394, 445, 642, 649, 654, 829
Hpy188III TCNNGA 5 cut(s) 213, 286, 623, 682, 847
Hpy8I GTNNAC 5 cut(s) 148, 172, 179, 376, 600
Hpy99I CGWCG 2 cut(s) 231, 343
HpyAV CCTTC 4 cut(s) 430, 722, 749, 758
HpyCH4III ACNGT 8 cut(s) 97, 164, 176, 191, 490, 496, 538, 563
HpyCH4IV ACGT 2 cut(s) 315, 596
HpyCH4V TGCA 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 299, 305
HpyF3I CTNAG 6 cut(s) 277, 442, 633, 641, 816, 833
HpySE526I ACGT 2 cut(s) 315, 596
Hsp92II CATG 2 cut(s) 289, 753
HspAI GCGC 4 cut(s) 608, 658, 660, 662
Kpn2I TCCGGA 1 cut(s) 622
LmnI GCTCC 3 cut(s) 50, 58, 91
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 2 cut(s) 510, 646
MaeI CTAG 1 cut(s) 862
MaeII ACGT 2 cut(s) 315, 596
MaeIII GTNAC 5 cut(s) 97, 490, 527, 563, 745
MauBI CGCGCGCG 2 cut(s) 658, 660
MboII GAAGA 6 cut(s) 7, 408, 415, 541, 712, 733
MfeI CAATTG 1 cut(s) 792
MflI RGATCY 2 cut(s) 619, 649
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 4 cut(s) 231, 267, 499, 792
MlyI GAGTC 1 cut(s) 21
MnlI CCTC 8 cut(s) 87, 90, 150, 339, 397, 400, 409, 473
MroI TCCGGA 1 cut(s) 622
MseI TTAA 1 cut(s) 498
MslI CAYNNNNRTG 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 4 cut(s) 89, 167, 513, 623
MunI CAATTG 1 cut(s) 792
MvnI CGCG 7 cut(s) 308, 372, 610, 658, 660, 662, 664
MwoI GCNNNNNNNGC 3 cut(s) 243, 299, 305
NlaIII CATG 2 cut(s) 289, 753
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 2 cut(s) 490, 745
NspI RCATGY 1 cut(s) 753
PagI TCATGA 1 cut(s) 285
PauI GCGCGC 2 cut(s) 658, 660
PciI ACATGT 1 cut(s) 749
PfeI GAWTC 4 cut(s) 259, 363, 395, 448
PflFI GACNNNGTC 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 62
PkrI GCNGC 4 cut(s) 224, 301, 371, 607
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Ppu21I YACGTR 1 cut(s) 316
PscI ACATGT 1 cut(s) 749
Psp124BI GAGCTC 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 67
PsuI RGATCY 2 cut(s) 619, 649
PsyI GACNNNGTC 1 cut(s) 11
PteI GCGCGC 2 cut(s) 658, 660
RsaI GTAC 2 cut(s) 314, 517
RsaNI GTAC 2 cut(s) 313, 516
RseI CAYNNNNRTG 1 cut(s) 308
SacI GAGCTC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 4 cut(s) 223, 300, 370, 606
SchI GAGTC 1 cut(s) 21
SduI GDGCHC 1 cut(s) 55
SfaNI GCATC 2 cut(s) 510, 646
SfcI CTRYAG 1 cut(s) 600
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
Sse9I AATT 4 cut(s) 231, 267, 499, 792
SsiI CCGC 6 cut(s) 39, 300, 306, 335, 370, 605
SspMI CTAG 1 cut(s) 862
SstI GAGCTC 1 cut(s) 55
TaaI ACNGT 8 cut(s) 97, 164, 176, 191, 490, 496, 538, 563
TaiI ACGT 2 cut(s) 318, 599
TaqI TCGA 3 cut(s) 214, 257, 681
TaqII GACCGA 1 cut(s) 24
TasI AATT 4 cut(s) 231, 267, 499, 792
TauI GCSGC 3 cut(s) 302, 372, 608
TfiI GAWTC 4 cut(s) 259, 363, 395, 448
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TseFI GTSAC 2 cut(s) 490, 745
TseI GCWGC 1 cut(s) 222
Tsp45I GTSAC 2 cut(s) 490, 745
TspDTI ATGAA 1 cut(s) 642
TspGWI ACGGA 5 cut(s) 123, 135, 337, 391, 546
Tth111I GACNNNGTC 1 cut(s) 11
Van91I CCANNNNNTGG 1 cut(s) 62
XapI RAATTY 1 cut(s) 231
XceI RCATGY 1 cut(s) 753
XmiI GTMKAC 2 cut(s) 147, 599
XspI CTAG 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.