Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011853

Physical Location & Seq

Genomic Coordinates Reverse (-)

35918115 .. 35918986

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G411400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGACAGACAGAGTCTACCCATCTTCCAAACCCACCACCAATGGCGGCGCCGCCGTGCCCGCCGTCGCTACTACCACGGCCGCCGCCACAGCCAACCCATCAAACACCAAGCCCCAACTCCGGCAACCATACCGCCCACAACCCCAGTACCACCACCGCCGGCACCGCAGGAGCAACTGCCACTGCAACTTCTGCTGCTGCTGCTTTTGGTCCATCCTCATCATCTTAGCCCTCGCCCTCCTCGCCGCCATAGCCGGCGCCGCCGTCTACATCCTCTACCGTCCTCACCGCCCTGAATTCACACTCACCTCCGTCCGCATTGCCAAGCTCAACCTCACCACCTCCTCCGACTTATCCACTTCACACCTCACTACCCTCTTCAACCTCACCCTCTCCTCCAAAAACCCTAACAACCACCTCACCTTCTCCTACGAGCCCTTTGCTCTGTCTCTCTCGTCCAGCGACGTCCAAATCGGAAACGGGTCGATCCCGGCTTTCACCAGCGGCACCAAAAACAGCACCTTTTTTCGCTCCATTTTGTCGACCTCTCAGGATCTCGACGTCGAGTCGGTTAAGTCTCTGAGATCGGATCTGAGGAAGAAGACCGGGGTGGCGTTGGAGTTGCAGATGGACACCAAAGTGAAGGTGGCAATGGGGAAGTTGAAGAGCAAGAAGGTGGGCATTAGGGTTACGTGTGAAGGGATTAAGGGGGCTGTACCTAAAGGCAAGTCCCCGTCGGTGGCTTCGGTTGCTAACTCCAAGTGCAAGGTTGATCTTCGGATCAAGATCTGGAAATGGACCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

269

Amino Acids

29.29

Weight (kDa)

10.06

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11890
fragaria_vesca	FvH4_2g31800
malus_domestica	MD08G1062800.v1.1 MD15G1058900.v1.1
prunus_persica	Prupe.1G411400_v2.0.a1
pyrus_communis	pycom08g05180 pycom15g05530
rosa_chinensis	RchiOBHm_Chr6g0311021
rosa_laevigata	RLG00000010442 RLG00000024283
rosa_multiflora	Rmu_sc0014619.1_g000003 Rmu_sc0015886.1_g000003 Rmu_sc0028521.1_g000001 Rmu_sc0028522.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158100 Rroxscaffold_7G00164080
rosa_rugosa	Rorug03G0183400 Rorug06G0384800
rosa_wichuraiana	Rw6G043420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	468, 564
AccB1I	GGYRCC	4 cut(s)	47, 162, 257, 506
AccI	GTMKAC	3 cut(s)	15, 267, 542
AclWI	GGATC	4 cut(s)	481, 561, 597, 788
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	296
AcyI	GRCGYC	4 cut(s)	48, 258, 465, 561
AfaI	GTAC	2 cut(s)	149, 717
AfiI	CCNNNNNNNGG	2 cut(s)	120, 739
AflIII	ACRYGT	1 cut(s)	692
AgsI	TTSAA	2 cut(s)	382, 664
AhdI	GACNNNNNGTC	1 cut(s)	565
AleI	CACNNNNGTG	1 cut(s)	638
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
Alw26I	GTCTC	2 cut(s)	453, 582
AlwI	GGATC	4 cut(s)	481, 561, 597, 788
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	3 cut(s)	195, 198, 201
ApoI	RAATTY	1 cut(s)	296
AspLEI	GCGC	2 cut(s)	50, 260
AspS9I	GGNCC	2 cut(s)	210, 798
AsuC2I	CCSGG	2 cut(s)	491, 607
AsuHPI	GGTGA	6 cut(s)	278, 298, 328, 379, 412, 490
AvaII	GGWCC	2 cut(s)	210, 798
BaeGI	GKGCMC	1 cut(s)	60
BaeI	ACNNNNGTAYC	2 cut(s)	131, 164
BanI	GGYRCC	4 cut(s)	47, 162, 257, 506
BanII	GRGCYC	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	608
BbvI	GCAGC	3 cut(s)	182, 185, 188
BccI	CCATC	4 cut(s)	28, 106, 221, 622
BceAI	ACGGC	4 cut(s)	38, 47, 93, 248
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BcnI	CCSGG	2 cut(s)	491, 607
BcoDI	GTCTC	2 cut(s)	453, 582
BfoI	RGCGCY	2 cut(s)	51, 261
BglII	AGATCT	1 cut(s)	786
Bme1390I	CCNGG	2 cut(s)	491, 607
Bme18I	GGWCC	2 cut(s)	210, 798
BmeRI	GACNNNNNGTC	1 cut(s)	565
BmgT120I	GGNCC	2 cut(s)	210, 798
BmiI	GGNNCC	4 cut(s)	49, 164, 259, 508
BmrFI	CCNGG	2 cut(s)	491, 607
BmrI	ACTGGG	1 cut(s)	139
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	608
BpuMI	CCSGG	2 cut(s)	491, 607
BsaAI	YACGTR	1 cut(s)	693
BsaBI	GATNNNNATC	1 cut(s)	785
BsaHI	GRCGYC	4 cut(s)	48, 258, 465, 561
BsaJI	CCNNGG	2 cut(s)	75, 606
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 739
Bse118I	RCCGGY	2 cut(s)	159, 254
Bse1I	ACTGG	1 cut(s)	145
Bse3DI	GCAATG	2 cut(s)	318, 657
Bse8I	GATNNNNATC	1 cut(s)	785
BseDI	CCNNGG	2 cut(s)	75, 606
BseGI	GGATG	2 cut(s)	213, 270
BseJI	GATNNNNATC	1 cut(s)	785
BseLI	CCNNNNNNNGG	2 cut(s)	120, 739
BseMI	GCAATG	2 cut(s)	318, 657
BseMII	CTCAG	3 cut(s)	563, 572, 584
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	3 cut(s)	230, 334, 385
BseSI	GKGCMC	1 cut(s)	60
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	182, 185, 188
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	80
BshNI	GGYRCC	4 cut(s)	47, 162, 257, 506
BsiEI	CGRYCG	1 cut(s)	81
BsiSI	CCGG	5 cut(s)	121, 160, 255, 491, 606
BslFI	GGGAC	1 cut(s)	715
BslI	CCNNNNNNNGG	2 cut(s)	120, 739
BsmAI	GTCTC	2 cut(s)	453, 582
BsmFI	GGGAC	1 cut(s)	715
BsnI	GGCC	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	60, 438
Bsp143I	GATC	7 cut(s)	486, 553, 584, 589, 772, 780, 786
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	3 cut(s)	562, 573, 585
BspLI	GGNNCC	4 cut(s)	49, 164, 259, 508
BspPI	GGATC	4 cut(s)	481, 561, 597, 788
BspQI	GCTCTTC	1 cut(s)	659
BspT107I	GGYRCC	4 cut(s)	47, 162, 257, 506
BsrDI	GCAATG	2 cut(s)	318, 657
BsrFI	RCCGGY	2 cut(s)	159, 254
BsrI	ACTGG	1 cut(s)	145
BssAI	RCCGGY	2 cut(s)	159, 254
BssECI	CCNNGG	2 cut(s)	75, 606
BssMI	GATC	7 cut(s)	486, 553, 584, 589, 772, 780, 786
BssNI	GRCGYC	4 cut(s)	48, 258, 465, 561
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	2 cut(s)	383, 659
BstACI	GRCGYC	4 cut(s)	48, 258, 465, 561
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	693
BstC8I	GCNNGC	3 cut(s)	60, 161, 256
BstDEI	CTNAG	4 cut(s)	226, 549, 581, 593
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	213, 270
BstH2I	RGCGCY	2 cut(s)	51, 261
BstHHI	GCGC	2 cut(s)	50, 260
BstKTI	GATC	7 cut(s)	489, 556, 587, 592, 775, 783, 789
BstMAI	GTCTC	2 cut(s)	453, 582
BstMBI	GATC	7 cut(s)	486, 553, 584, 589, 772, 780, 786
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	9 cut(s)	59, 89, 165, 192, 201, 242, 251, 260, 749
BstSCI	CCNGG	2 cut(s)	489, 605
BstSLI	GKGCMC	1 cut(s)	60
BstV1I	GCAGC	3 cut(s)	182, 185, 188
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	3 cut(s)	553, 589, 786
BstYI	RGATCY	3 cut(s)	553, 589, 786
BstZI	CGGCCG	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	213, 270
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	3 cut(s)	60, 161, 256
CfoI	GCGC	2 cut(s)	50, 260
Cfr10I	RCCGGY	2 cut(s)	159, 254
Cfr13I	GGNCC	2 cut(s)	210, 798
Csp6I	GTAC	2 cut(s)	148, 716
CviQI	GTAC	2 cut(s)	148, 716
DdeI	CTNAG	4 cut(s)	226, 549, 581, 593
DinI	GGCGCC	2 cut(s)	49, 259
DpnI	GATC	7 cut(s)	488, 555, 586, 591, 774, 782, 788
DpnII	GATC	7 cut(s)	486, 553, 584, 589, 772, 780, 786
DriI	GACNNNNNGTC	1 cut(s)	565
EaeI	YGGCCR	1 cut(s)	78
EagI	CGGCCG	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	383, 659
Eam1105I	GACNNNNNGTC	1 cut(s)	565
EarI	CTCTTC	2 cut(s)	383, 659
EclXI	CGGCCG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	438
Eco47I	GGWCC	2 cut(s)	210, 798
Eco52I	CGGCCG	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	438
EgeI	GGCGCC	2 cut(s)	49, 259
EheI	GGCGCC	2 cut(s)	49, 259
FaiI	YATR	2 cut(s)	130, 251
FaqI	GGGAC	1 cut(s)	715
FauI	CCCGC	1 cut(s)	67
FblI	GTMKAC	3 cut(s)	15, 267, 542
FokI	GGATG	2 cut(s)	200, 257
FriOI	GRGCYC	1 cut(s)	438
GlaI	GCGC	2 cut(s)	49, 259
HaeII	RGCGCY	2 cut(s)	51, 261
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	5 cut(s)	121, 160, 255, 491, 606
HhaI	GCGC	2 cut(s)	50, 260
Hin1I	GRCGYC	4 cut(s)	48, 258, 465, 561
Hin6I	GCGC	2 cut(s)	48, 258
HinP1I	GCGC	2 cut(s)	48, 258
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HinfI	GANTC	2 cut(s)	12, 566
HpaII	CCGG	5 cut(s)	121, 160, 255, 491, 606
HphI	GGTGA	6 cut(s)	278, 298, 328, 379, 412, 490
Hpy166II	GTNNAC	3 cut(s)	16, 268, 543
Hpy188I	TCNGA	6 cut(s)	349, 476, 582, 589, 594, 780
Hpy188III	TCNNGA	4 cut(s)	551, 557, 784, 790
Hpy8I	GTNNAC	3 cut(s)	16, 268, 543
Hpy99I	CGWCG	5 cut(s)	68, 467, 563, 566, 739
HpyAV	CCTTC	4 cut(s)	433, 637, 667, 692
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	3 cut(s)	465, 561, 692
HpyCH4V	TGCA	3 cut(s)	186, 625, 765
HpyF10VI	GCNNNNNNNGC	9 cut(s)	59, 89, 165, 192, 201, 242, 251, 260, 749
HpyF3I	CTNAG	4 cut(s)	226, 549, 581, 593
HpySE526I	ACGT	3 cut(s)	465, 561, 692
Hsp92I	GRCGYC	4 cut(s)	48, 258, 465, 561
HspAI	GCGC	2 cut(s)	48, 258
KasI	GGCGCC	2 cut(s)	47, 257
KroI	GCCGGC	2 cut(s)	159, 254
KroNI	GCCGGC	2 cut(s)	161, 256
Kzo9I	GATC	7 cut(s)	486, 553, 584, 589, 772, 780, 786
LguI	GCTCTTC	1 cut(s)	659
LmnI	GCTCC	2 cut(s)	171, 536
Lsp1109I	GCAGC	3 cut(s)	182, 185, 188
MaeII	ACGT	3 cut(s)	465, 561, 692
MaeIII	GTNAC	1 cut(s)	688
MalI	GATC	7 cut(s)	488, 555, 586, 591, 774, 782, 788
MboI	GATC	7 cut(s)	486, 553, 584, 589, 772, 780, 786
MboII	GAAGA	6 cut(s)	15, 370, 610, 613, 676, 767
MflI	RGATCY	3 cut(s)	553, 589, 786
MhlI	GDGCHC	2 cut(s)	60, 438
MluCI	AATT	1 cut(s)	296
Mly113I	GGCGCC	2 cut(s)	48, 258
MlyI	GAGTC	2 cut(s)	21, 575
MmeI	TCCRAC	2 cut(s)	372, 597
MroNI	GCCGGC	2 cut(s)	159, 254
MseI	TTAA	3 cut(s)	573, 705, 805
MslI	CAYNNNNRTG	1 cut(s)	638
MspA1I	CMGCKG	1 cut(s)	504
MspI	CCGG	5 cut(s)	121, 160, 255, 491, 606
MspR9I	CCNGG	2 cut(s)	491, 607
MwoI	GCNNNNNNNGC	9 cut(s)	59, 89, 165, 192, 201, 242, 251, 260, 749
NaeI	GCCGGC	2 cut(s)	161, 256
NarI	GGCGCC	2 cut(s)	48, 258
NciI	CCSGG	2 cut(s)	491, 607
NdeII	GATC	7 cut(s)	486, 553, 584, 589, 772, 780, 786
NgoMIV	GCCGGC	2 cut(s)	159, 254
NlaIV	GGNNCC	4 cut(s)	49, 164, 259, 508
OliI	CACNNNNGTG	1 cut(s)	638
PciSI	GCTCTTC	1 cut(s)	659
PdiI	GCCGGC	2 cut(s)	161, 256
PflFI	GACNNNGTC	1 cut(s)	11
PleI	GAGTC	2 cut(s)	20, 574
PluTI	GGCGCC	2 cut(s)	51, 261
PpsI	GAGTC	2 cut(s)	20, 574
Ppu21I	YACGTR	1 cut(s)	693
PspN4I	GGNNCC	4 cut(s)	49, 164, 259, 508
PspPI	GGNCC	2 cut(s)	210, 798
PsuI	RGATCY	3 cut(s)	553, 589, 786
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	2 cut(s)	149, 717
RsaNI	GTAC	2 cut(s)	148, 716
RseI	CAYNNNNRTG	1 cut(s)	638
SalI	GTCGAC	1 cut(s)	541
SapI	GCTCTTC	1 cut(s)	659
SaqAI	TTAA	3 cut(s)	573, 705, 805
Sau3AI	GATC	7 cut(s)	486, 553, 584, 589, 772, 780, 786
Sau96I	GGNCC	2 cut(s)	210, 798
SchI	GAGTC	2 cut(s)	21, 575
ScrFI	CCNGG	2 cut(s)	491, 607
SduI	GDGCHC	2 cut(s)	60, 438
SfoI	GGCGCC	2 cut(s)	49, 259
SinI	GGWCC	2 cut(s)	210, 798
SmiMI	CAYNNNNRTG	1 cut(s)	638
Sse9I	AATT	1 cut(s)	296
SspDI	GGCGCC	2 cut(s)	47, 257
StyD4I	CCNGG	2 cut(s)	489, 605
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	3 cut(s)	468, 564, 695
TaqI	TCGA	4 cut(s)	485, 542, 558, 564
TasI	AATT	1 cut(s)	296
TauI	GCSGC	7 cut(s)	48, 53, 83, 86, 248, 263, 507
Tru1I	TTAA	3 cut(s)	573, 705, 805
Tru9I	TTAA	3 cut(s)	573, 705, 805
TscAI	CASTG	1 cut(s)	188
TseI	GCWGC	3 cut(s)	195, 198, 201
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	1 cut(s)	188
Tth111I	GACNNNGTC	1 cut(s)	11
VpaK11BI	GGWCC	2 cut(s)	210, 798
XapI	RAATTY	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XmiI	GTMKAC	3 cut(s)	15, 267, 542
ZraI	GACGTC	2 cut(s)	466, 562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.