Rw6G043420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011853
Physical Location & Seq
Forward (+)
66760914 .. 66762261
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G043420.1

Sequence Viewer

Length: 789 bp
ATGACGGACAGAGTCTACCCGTCTTCCAAGGTGGCCACAAACGGCGCGCGAACGGCGCCACCGCGACCACCACCGCCGCCGCCAACCCCACACAACCGGAGTCTCTGCTGCTGCTGCTGCTTCTGGTCGATACTGATATTCCTGATTGTGGCTCTCCTCGTCGCCATCGCCGGCACGGCCCTCTACGTCCTCTACCGTCCGCACCGCCCCGAGTTCACCGTCACAGCCCTCAAAATCGGGAAGCTCAACCTCACCGACAACCCCGACGGCGCCAGCTCACACCTCGTCACACGCTTCAACCTCACTATCGCTCCCAAAAACCCGAACAACCACCTCAGCTTCGCCTACGACTCCTTCGCGCTCACTCTCTCCGCCGCCAACAACGACGTCGTTCTCGGAAACGGCTCGATCCCGGCCTTCTTCAGCGACACGAAGAACTTCACGTCGTTCCGGTCGATCATCACCGCGGCGAGTGACCTCGATTTGGAGTCGGTCAAGTCTCTGAGATCGGATCTGAAGCGGAAGGGCGGCGTTCCGATGAAGTTGCGGATGGACACCAAGGTGAAGGTGACGGTGGGAGGGAAATTGAAGAGCAACAAGGTGGGGATTAGGGTTACGTGTCAGCCAATCAGAGGGGTAGCACCGAAAGGTAAGTCTCCGTCGGTGGCTTCTGTTGCTGACTCCCATTGCAAGGACTACTTGGTCACTGTGATTGCTTGCCCAGAGCTTGAAGCTTCTCACTTGATACCTGTGAGTTTGGTGGTCCGCTTTAACTCTGGCTGGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

262

Amino Acids

28.31

Weight (kDa)

9.67

Isoelectric Point (pI)

28.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 105 - 207 1e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 701
AatII GACGTC 1 cut(s) 390
AccB1I GGYRCC 2 cut(s) 55, 269
AccI GTMKAC 1 cut(s) 15
AccII CGCG 5 cut(s) 47, 49, 64, 359, 467
AclWI GGATC 2 cut(s) 403, 519
AcoI YGGCCR 1 cut(s) 33
AcuI CTGAAG 2 cut(s) 406, 536
AcyI GRCGYC 3 cut(s) 56, 270, 387
AfaI GTAC 1 cut(s) 785
AfiI CCNNNNNNNGG 4 cut(s) 148, 484, 632, 691
AflIII ACRYGT 1 cut(s) 617
AgsI TTSAA 3 cut(s) 298, 589, 731
AjiI CACGTC 1 cut(s) 444
AleI CACNNNNGTG 1 cut(s) 560
AluBI AGCT 5 cut(s) 244, 276, 339, 727, 734
AluI AGCT 5 cut(s) 244, 276, 339, 727, 734
Alw26I GTCTC 3 cut(s) 107, 504, 660
AlwI GGATC 2 cut(s) 403, 519
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 3 cut(s) 33, 177, 414
ApeKI GCWGC 4 cut(s) 108, 111, 114, 117
ArsI GACNNNNNNTTYG 2 cut(s) 638, 670
Asp700I GAANNNNTTC 1 cut(s) 437
AspLEI GCGC 5 cut(s) 47, 49, 58, 272, 361
AspS9I GGNCC 2 cut(s) 178, 763
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 5 cut(s) 208, 244, 454, 574, 580
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 763
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 2 cut(s) 55, 269
BbsI GAAGAC 1 cut(s) 15
BbvCI CCTCAGC 1 cut(s) 335
BbvI GCAGC 4 cut(s) 95, 98, 101, 104
BccI CCATC 2 cut(s) 173, 544
BceAI ACGGC 5 cut(s) 58, 69, 192, 283, 418
BcgI CGANNNNNNTGC 2 cut(s) 526, 560
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 3 cut(s) 107, 504, 660
BfaI CTAG 1 cut(s) 787
BfoI RGCGCY 2 cut(s) 59, 273
BglI GCCNNNNNGGC 1 cut(s) 176
BisI GCNGC 9 cut(s) 77, 80, 109, 112, 115, 118, 375, 468, 529
BlsI GCNGC 9 cut(s) 78, 81, 110, 113, 116, 119, 376, 469, 530
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 1 cut(s) 763
BmeT110I CYCGRG 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 444
BmgT120I GGNCC 2 cut(s) 178, 763
BmiI GGNNCC 2 cut(s) 57, 271
BmrFI CCNGG 1 cut(s) 413
BpiI GAAGAC 1 cut(s) 15
Bpu10I CCTNAGC 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 413
BsaAI YACGTR 1 cut(s) 618
BsaHI GRCGYC 3 cut(s) 56, 270, 387
BsaJI CCNNGG 3 cut(s) 27, 465, 558
BsaWI WCCGGW 2 cut(s) 96, 450
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 4 cut(s) 148, 484, 632, 691
Bse118I RCCGGY 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 685
BseDI CCNNGG 3 cut(s) 27, 465, 558
BseGI GGATG 1 cut(s) 555
BseLI CCNNNNNNNGG 4 cut(s) 148, 484, 632, 691
BseMI GCAATG 1 cut(s) 685
BseMII CTCAG 2 cut(s) 349, 494
BsePI GCGCGC 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 4 cut(s) 95, 98, 101, 104
Bsh1236I CGCG 5 cut(s) 47, 49, 64, 359, 467
Bsh1285I CGRYCG 1 cut(s) 455
BshFI GGCC 3 cut(s) 35, 179, 416
BshNI GGYRCC 2 cut(s) 55, 269
BsiEI CGRYCG 1 cut(s) 455
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 4 cut(s) 97, 171, 413, 451
BslI CCNNNNNNNGG 4 cut(s) 148, 484, 632, 691
BsmAI GTCTC 3 cut(s) 107, 504, 660
BsnI GGCC 3 cut(s) 35, 179, 416
BsoBI CYCGRG 1 cut(s) 209
Bsp143I GATC 4 cut(s) 408, 456, 506, 511
BspANI GGCC 3 cut(s) 35, 179, 416
BspCNI CTCAG 2 cut(s) 348, 495
BspFNI CGCG 5 cut(s) 47, 49, 64, 359, 467
BspLI GGNNCC 2 cut(s) 57, 271
BspPI GGATC 2 cut(s) 403, 519
BspQI GCTCTTC 1 cut(s) 584
BspT107I GGYRCC 2 cut(s) 55, 269
BsrDI GCAATG 1 cut(s) 685
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 3 cut(s) 27, 465, 558
BssHII GCGCGC 1 cut(s) 45
BssMI GATC 4 cut(s) 408, 456, 506, 511
BssNI GRCGYC 3 cut(s) 56, 270, 387
BssT1I CCWWGG 2 cut(s) 27, 558
Bst4CI ACNGT 4 cut(s) 197, 220, 574, 709
Bst6I CTCTTC 1 cut(s) 584
BstACI GRCGYC 3 cut(s) 56, 270, 387
BstBAI YACGTR 1 cut(s) 618
BstC8I GCNNGC 4 cut(s) 47, 172, 274, 718
BstDEI CTNAG 2 cut(s) 335, 503
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 1 cut(s) 555
BstFNI CGCG 5 cut(s) 47, 49, 64, 359, 467
BstH2I RGCGCY 2 cut(s) 59, 273
BstHHI GCGC 5 cut(s) 47, 49, 58, 272, 361
BstKTI GATC 4 cut(s) 411, 459, 509, 514
BstMAI GTCTC 3 cut(s) 107, 504, 660
BstMBI GATC 4 cut(s) 408, 456, 506, 511
BstMCI CGRYCG 1 cut(s) 455
BstMWI GCNNNNNNNGC 6 cut(s) 53, 55, 114, 117, 176, 674
BstSCI CCNGG 1 cut(s) 411
BstUI CGCG 5 cut(s) 47, 49, 64, 359, 467
BstV1I GCAGC 4 cut(s) 95, 98, 101, 104
BstV2I GAAGAC 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BsuRI GGCC 3 cut(s) 35, 179, 416
BtgI CCRYGG 1 cut(s) 465
BtgZI GCGATG 1 cut(s) 151
BtrI CACGTC 1 cut(s) 444
BtsCI GGATG 1 cut(s) 555
BtsIMutI CAGTG 1 cut(s) 705
Cac8I GCNNGC 4 cut(s) 47, 172, 274, 718
CfoI GCGC 5 cut(s) 47, 49, 58, 272, 361
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 178, 763
Cfr42I CCGCGG 1 cut(s) 468
Csp6I GTAC 1 cut(s) 784
CviQI GTAC 1 cut(s) 784
DdeI CTNAG 2 cut(s) 335, 503
DinI GGCGCC 2 cut(s) 57, 271
DpnI GATC 4 cut(s) 410, 458, 508, 513
DpnII GATC 4 cut(s) 408, 456, 506, 511
DrdI GACNNNNNNGTC 1 cut(s) 701
DseDI GACNNNNNNGTC 1 cut(s) 701
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 584
EarI CTCTTC 1 cut(s) 584
EciI GGCGGA 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 27, 558
Eco47I GGWCC 1 cut(s) 763
Eco57I CTGAAG 2 cut(s) 406, 536
Eco88I CYCGRG 1 cut(s) 209
EcoT14I CCWWGG 2 cut(s) 27, 558
EgeI GGCGCC 2 cut(s) 57, 271
EheI GGCGCC 2 cut(s) 57, 271
ErhI CCWWGG 2 cut(s) 27, 558
FalI AAGNNNNNCTT 2 cut(s) 683, 715
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 9 cut(s) 77, 80, 109, 112, 115, 118, 375, 468, 529
FokI GGATG 1 cut(s) 562
Fsp4HI GCNGC 9 cut(s) 77, 80, 109, 112, 115, 118, 375, 468, 529
FspBI CTAG 1 cut(s) 787
GlaI GCGC 5 cut(s) 46, 48, 57, 271, 360
GluI GCNGC 9 cut(s) 77, 80, 109, 112, 115, 118, 375, 468, 529
HaeII RGCGCY 2 cut(s) 59, 273
HaeIII GGCC 3 cut(s) 35, 179, 416
HapII CCGG 4 cut(s) 97, 171, 413, 451
HhaI GCGC 5 cut(s) 47, 49, 58, 272, 361
Hin1I GRCGYC 3 cut(s) 56, 270, 387
Hin6I GCGC 5 cut(s) 45, 47, 56, 270, 359
HinP1I GCGC 5 cut(s) 45, 47, 56, 270, 359
HindIII AAGCTT 1 cut(s) 732
HinfI GANTC 5 cut(s) 12, 100, 350, 488, 680
HpaII CCGG 4 cut(s) 97, 171, 413, 451
HphI GGTGA 5 cut(s) 208, 244, 454, 574, 580
Hpy166II GTNNAC 2 cut(s) 16, 216
Hpy188I TCNGA 6 cut(s) 398, 504, 511, 516, 537, 632
Hpy188III TCNNGA 2 cut(s) 142, 238
Hpy8I GTNNAC 2 cut(s) 16, 216
Hpy99I CGWCG 6 cut(s) 164, 269, 389, 392, 448, 664
HpyAV CCTTC 4 cut(s) 364, 427, 517, 559
HpyCH4III ACNGT 4 cut(s) 197, 220, 574, 709
HpyCH4IV ACGT 4 cut(s) 186, 387, 443, 617
HpyCH4V TGCA 1 cut(s) 690
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 55, 114, 117, 176, 674
HpyF3I CTNAG 2 cut(s) 335, 503
HpySE526I ACGT 4 cut(s) 186, 387, 443, 617
Hsp92I GRCGYC 3 cut(s) 56, 270, 387
HspAI GCGC 5 cut(s) 45, 47, 56, 270, 359
KasI GGCGCC 2 cut(s) 55, 269
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
KspI CCGCGG 1 cut(s) 468
Kzo9I GATC 4 cut(s) 408, 456, 506, 511
LguI GCTCTTC 1 cut(s) 584
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 4 cut(s) 95, 98, 101, 104
MaeI CTAG 1 cut(s) 787
MaeII ACGT 4 cut(s) 186, 387, 443, 617
MaeIII GTNAC 6 cut(s) 220, 286, 473, 568, 613, 703
MalI GATC 4 cut(s) 410, 458, 508, 513
MboI GATC 4 cut(s) 408, 456, 506, 511
MboII GAAGA 4 cut(s) 15, 412, 445, 601
MflI RGATCY 1 cut(s) 511
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 1 cut(s) 584
MluNI TGGCCA 1 cut(s) 35
Mly113I GGCGCC 2 cut(s) 56, 270
MlyI GAGTC 5 cut(s) 21, 109, 344, 497, 674
Mox20I TGGCCA 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 170
MroXI GAANNNNTTC 1 cut(s) 437
MscI TGGCCA 1 cut(s) 35
MseI TTAA 1 cut(s) 771
MslI CAYNNNNRTG 1 cut(s) 560
Msp20I TGGCCA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 4 cut(s) 97, 171, 413, 451
MspR9I CCNGG 1 cut(s) 413
MvnI CGCG 5 cut(s) 47, 49, 64, 359, 467
MwoI GCNNNNNNNGC 6 cut(s) 53, 55, 114, 117, 176, 674
NaeI GCCGGC 1 cut(s) 172
NarI GGCGCC 2 cut(s) 56, 270
NciI CCSGG 1 cut(s) 413
NdeII GATC 4 cut(s) 408, 456, 506, 511
NgoMIV GCCGGC 1 cut(s) 170
NlaIV GGNNCC 2 cut(s) 57, 271
NmuCI GTSAC 5 cut(s) 220, 286, 473, 568, 703
OliI CACNNNNGTG 1 cut(s) 560
PauI GCGCGC 1 cut(s) 45
PciSI GCTCTTC 1 cut(s) 584
PcsI WCGNNNNNNNCGW 1 cut(s) 452
PdiI GCCGGC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 437
PflFI GACNNNGTC 1 cut(s) 11
PkrI GCNGC 9 cut(s) 78, 81, 110, 113, 116, 119, 376, 469, 530
PleI GAGTC 5 cut(s) 20, 108, 344, 496, 674
PluTI GGCGCC 2 cut(s) 59, 273
PpsI GAGTC 5 cut(s) 20, 108, 344, 496, 674
Ppu21I YACGTR 1 cut(s) 618
PspN4I GGNNCC 2 cut(s) 57, 271
PspPI GGNCC 2 cut(s) 178, 763
PsuI RGATCY 1 cut(s) 511
PsyI GACNNNGTC 1 cut(s) 11
PteI GCGCGC 1 cut(s) 45
RsaI GTAC 1 cut(s) 785
RsaNI GTAC 1 cut(s) 784
RseI CAYNNNNRTG 1 cut(s) 560
SacII CCGCGG 1 cut(s) 468
SapI GCTCTTC 1 cut(s) 584
SaqAI TTAA 1 cut(s) 771
SatI GCNGC 9 cut(s) 77, 80, 109, 112, 115, 118, 375, 468, 529
Sau3AI GATC 4 cut(s) 408, 456, 506, 511
Sau96I GGNCC 2 cut(s) 178, 763
SchI GAGTC 5 cut(s) 21, 109, 344, 497, 674
ScrFI CCNGG 1 cut(s) 413
SfoI GGCGCC 2 cut(s) 57, 271
Sfr303I CCGCGG 1 cut(s) 468
SgrBI CCGCGG 1 cut(s) 468
SinI GGWCC 1 cut(s) 763
SmiMI CAYNNNNRTG 1 cut(s) 560
Sse9I AATT 1 cut(s) 584
SspDI GGCGCC 2 cut(s) 55, 269
SspMI CTAG 1 cut(s) 787
StyD4I CCNGG 1 cut(s) 411
StyI CCWWGG 2 cut(s) 27, 558
TaaI ACNGT 4 cut(s) 197, 220, 574, 709
TaiI ACGT 4 cut(s) 189, 390, 446, 620
TaqI TCGA 4 cut(s) 128, 407, 455, 480
TaqII GACCGA 1 cut(s) 481
TasI AATT 1 cut(s) 584
TauI GCSGC 5 cut(s) 79, 82, 377, 470, 531
Tru1I TTAA 1 cut(s) 771
Tru9I TTAA 1 cut(s) 771
TscAI CASTG 1 cut(s) 712
TseFI GTSAC 5 cut(s) 220, 286, 473, 568, 703
TseI GCWGC 4 cut(s) 108, 111, 114, 117
Tsp45I GTSAC 5 cut(s) 220, 286, 473, 568, 703
TspDTI ATGAA 1 cut(s) 554
TspGWI ACGGA 2 cut(s) 20, 648
TspRI CASTG 1 cut(s) 712
Tth111I GACNNNGTC 1 cut(s) 11
VpaK11BI GGWCC 1 cut(s) 763
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 1 cut(s) 787
ZraI GACGTC 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.