Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015886.1

Orthogroup ID

OG0011853

Physical Location & Seq

Genomic Coordinates Reverse (-)

18900 .. 20303

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015886.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgatgatcatgagaggagaggcgaggagtcgaattgttggatgggtgcgtgcgtcgagagttgagaagaccacctcagcttcgcctacgagtactccttcgccctcactctctccgtcactaacagcgacgtcattttctgaaactgctcgatcgatcccggcgttcttcagctacactaagaacttcacgtcgttctggtcgatcatcaccacgacgagtgacctcaatttggagtcactaagatcggatctgaagcggaagggcggggttccaatgaagttggagatggacaccagatcggatctgaagcggaagggcggggttccaatgaagttggaaatggacaccgaggtgaaagtgacagtgagagggaaattgaagagcaagaaggtggggattagggttacgtgtcagcaaatcagaggggtagcactgaaaggtaagtctccttcgatggcttcagttgctgactcccattacaaggttgatctttggaacaagatctggagatggaccttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

174

Amino Acids

19.47

Weight (kDa)

10.52

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11890
fragaria_vesca	FvH4_2g31800
malus_domestica	MD08G1062800.v1.1 MD15G1058900.v1.1
prunus_persica	Prupe.1G411400_v2.0.a1
pyrus_communis	pycom08g05180 pycom15g05530
rosa_chinensis	RchiOBHm_Chr6g0311021
rosa_laevigata	RLG00000010442 RLG00000024283
rosa_multiflora	Rmu_sc0014619.1_g000003 Rmu_sc0015886.1_g000003 Rmu_sc0028521.1_g000001 Rmu_sc0028522.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158100 Rroxscaffold_7G00164080
rosa_rugosa	Rorug03G0183400 Rorug06G0384800
rosa_wichuraiana	Rw6G043420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	134
AciI	CCGC	4 cut(s)	259, 267, 313, 321
AclWI	GGATC	3 cut(s)	151, 258, 312
AcuI	CTGAAG	4 cut(s)	154, 275, 329, 447
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	232, 484
AflIII	ACRYGT	1 cut(s)	410
AgsI	TTSAA	1 cut(s)	382
AjiI	CACGTC	1 cut(s)	192
AleI	CACNNNNGTG	1 cut(s)	353
AluBI	AGCT	2 cut(s)	80, 174
AluI	AGCT	2 cut(s)	80, 174
Alw26I	GTCTC	1 cut(s)	453
AlwI	GGATC	3 cut(s)	151, 258, 312
AlwNI	CAGNNNCTG	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	516
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	202, 367
AvaII	GGWCC	1 cut(s)	516
BarI	GAAGNNNNNNTAC	2 cut(s)	436, 468
BbsI	GAAGAC	1 cut(s)	74
BbvCI	CCTCAGC	1 cut(s)	76
BccI	CCATC	4 cut(s)	36, 283, 451, 507
BclI	TGATCA	1 cut(s)	6
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	453
BglII	AGATCT	1 cut(s)	504
BmcAI	AGTACT	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	516
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	516
BmiI	GGNNCC	2 cut(s)	273, 327
BmrFI	CCNGG	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	411
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	351
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 484
BseCI	ATCGAT	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	232, 484
BseMII	CTCAG	1 cut(s)	90
BseRI	GAGGAG	2 cut(s)	30, 40
Bsh1285I	CGRYCG	1 cut(s)	155
BshVI	ATCGAT	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	232, 484
BsmAI	GTCTC	1 cut(s)	453
BspACI	CCGC	4 cut(s)	259, 267, 313, 321
BspCNI	CTCAG	1 cut(s)	89
BspDI	ATCGAT	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	2 cut(s)	273, 327
BspPI	GGATC	3 cut(s)	151, 258, 312
BspQI	GCTCTTC	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	351
BssNI	GRCGYC	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	377
BstACI	GRCGYC	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	3 cut(s)	76, 180, 242
BstF5I	GGATG	1 cut(s)	47
BstMAI	GTCTC	1 cut(s)	453
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	3 cut(s)	250, 304, 504
BstYI	RGATCY	3 cut(s)	250, 304, 504
Bsu15I	ATCGAT	1 cut(s)	155
BsuTUI	ATCGAT	1 cut(s)	155
BtrI	CACGTC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	372, 434
Cac8I	GCNNGC	1 cut(s)	51
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	516
ClaI	ATCGAT	1 cut(s)	155
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	93
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	3 cut(s)	80, 174, 461
CviKI_1	RGCY	3 cut(s)	80, 174, 461
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	3 cut(s)	76, 180, 242
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	516
Eco57I	CTGAAG	4 cut(s)	154, 275, 329, 447
FaeI	CATG	1 cut(s)	13
FaiI	YATR	1 cut(s)	11
FatI	CATG	1 cut(s)	9
FauI	CCCGC	2 cut(s)	260, 314
FbaI	TGATCA	1 cut(s)	6
FokI	GGATG	1 cut(s)	54
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	1 cut(s)	13
HinfI	GANTC	3 cut(s)	28, 236, 473
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	2 cut(s)	202, 367
Hpy188I	TCNGA	6 cut(s)	142, 250, 255, 304, 309, 425
Hpy188III	TCNNGA	3 cut(s)	10, 57, 508
Hpy99I	CGWCG	4 cut(s)	58, 133, 196, 220
HpyAV	CCTTC	5 cut(s)	108, 256, 310, 385, 462
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	3 cut(s)	131, 191, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	3 cut(s)	76, 180, 242
HpySE526I	ACGT	3 cut(s)	131, 191, 410
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	13
Ksp22I	TGATCA	1 cut(s)	6
LguI	GCTCTTC	1 cut(s)	377
LpnPI	CCDG	4 cut(s)	174, 184, 310, 493
MaeII	ACGT	3 cut(s)	131, 191, 410
MaeIII	GTNAC	5 cut(s)	117, 221, 237, 361, 406
MboII	GAAGA	3 cut(s)	79, 160, 394
MflI	RGATCY	3 cut(s)	250, 304, 504
MluCI	AATT	3 cut(s)	33, 229, 377
MlyI	GAGTC	3 cut(s)	37, 245, 467
MmeI	TCCRAC	3 cut(s)	19, 264, 318
MnlI	CCTC	9 cut(s)	8, 13, 18, 85, 115, 236, 346, 365, 419
MseI	TTAA	1 cut(s)	523
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	467
NciI	CCSGG	1 cut(s)	161
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	2 cut(s)	273, 327
NmuCI	GTSAC	4 cut(s)	117, 221, 237, 361
OliI	CACNNNNGTG	1 cut(s)	353
PagI	TCATGA	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	2 cut(s)	161, 200
Ple19I	CGATCG	1 cut(s)	155
PleI	GAGTC	3 cut(s)	36, 244, 467
PpsI	GAGTC	3 cut(s)	36, 244, 467
Ppu21I	YACGTR	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	273, 327
PspPI	GGNCC	1 cut(s)	516
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	3 cut(s)	250, 304, 504
PvuI	CGATCG	1 cut(s)	155
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	353
SapI	GCTCTTC	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	523
Sau96I	GGNCC	1 cut(s)	516
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	3 cut(s)	37, 245, 467
ScrFI	CCNGG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	516
SmiMI	CAYNNNNRTG	1 cut(s)	353
Sse9I	AATT	3 cut(s)	33, 229, 377
SsiI	CCGC	4 cut(s)	259, 267, 313, 321
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	3 cut(s)	134, 194, 413
TaqI	TCGA	6 cut(s)	31, 56, 151, 155, 203, 455
TasI	AATT	3 cut(s)	33, 229, 377
TatI	WGTACW	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	523
Tru9I	TTAA	1 cut(s)	523
TscAI	CASTG	2 cut(s)	372, 441
TseFI	GTSAC	4 cut(s)	117, 221, 237, 361
Tsp45I	GTSAC	4 cut(s)	117, 221, 237, 361
TspDTI	ATGAA	2 cut(s)	293, 347
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	2 cut(s)	372, 441
VpaK11BI	GGWCC	1 cut(s)	516
ZraI	GACGTC	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.