Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011853

Physical Location & Seq

Genomic Coordinates Reverse (-)

15789266 .. 15790266

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0183400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCAGCCTCTCTCACCATCTCAAGGCTCCTCGCAGCCCCCAGATCCCTCTCCCTCTCCTCCACCACAACCAAAGCCTCTCTCTTCTCCGCCAAACCCTTCTCTTCAAAATCCTCCTACGCCCCTTTCTCTCTCAATCACCACACCCACCCCAAACCCCTCAAGTTCTCCACCTCCGCCGCAAAACCCATCTCCGCCACCATCTCCGTCGGCGACAAGCTCCCAGAGTCCACCCTCTCCTACCTCGACGCCGCCGGCGACGTCCAGACCGTCACCGTCTCTGAGCTGACCAAGTCCAAGAAGGCCGTCCTCTTCGCCGTCCCCGGCGCCTTCACCCCCACCTGTTCCCAGAAGCACGTTCCCGGCTTCGTGGAGAAGTCGGCCGAGCTCAAGGCCAAGGGGGTCGACACCATCGCTTGCATTTCGGTCAACGACGCCTTCGTGATGAAGGCGTGGAAGGAGAGTCTCAAGATCGGAGACGAGGTACTTTTGTTGTCCGATGGGAATGGGAACTTCACCAAAGCCATCGGGGTCGAGCTCGATTTGAGTGATAAGCCGGTGGGATTGGGAGTCAGGTCCAGAAGGTACTCGCTTTTGGCTGAAGATGGAGTCGTGAAGGTGTTGAACTTGGAGGAAGGTGGTGCTTTCACTTCCAGTGGAGCTGATGATATTCTCAAAGTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

228

Amino Acids

23.95

Weight (kDa)

8.97

Isoelectric Point (pI)

26.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	70 - 224	6e-36	Redoxin
AhpC-TSA	PF00578	70 - 206	7.5e-15	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11890
fragaria_vesca	FvH4_2g31800
malus_domestica	MD08G1062800.v1.1 MD15G1058900.v1.1
prunus_persica	Prupe.1G411400_v2.0.a1
pyrus_communis	pycom08g05180 pycom15g05530
rosa_chinensis	RchiOBHm_Chr6g0311021
rosa_laevigata	RLG00000010442 RLG00000024283
rosa_multiflora	Rmu_sc0014619.1_g000003 Rmu_sc0015886.1_g000003 Rmu_sc0028521.1_g000001 Rmu_sc0028522.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158100 Rroxscaffold_7G00164080
rosa_rugosa	Rorug03G0183400 Rorug06G0384800
rosa_wichuraiana	Rw6G043420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	5 cut(s)	90, 177, 180, 195, 252
AclWI	GGATC	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	381
AcuI	CTGAAG	1 cut(s)	621
AcyI	GRCGYC	4 cut(s)	249, 261, 327, 435
AfaI	GTAC	2 cut(s)	486, 587
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	108, 625
AluBI	AGCT	5 cut(s)	220, 286, 388, 538, 662
AluI	AGCT	5 cut(s)	220, 286, 388, 538, 662
Alw21I	GWGCWC	2 cut(s)	390, 540
Alw26I	GTCTC	3 cut(s)	283, 470, 471
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	3 cut(s)	303, 381, 393
ApeKI	GCWGC	2 cut(s)	5, 35
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	576
AsuC2I	CCSGG	2 cut(s)	324, 363
AsuHPI	GGTGA	5 cut(s)	7, 131, 265, 325, 508
AvaII	GGWCC	1 cut(s)	576
BaeI	ACNNNNGTAYC	2 cut(s)	476, 509
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	2 cut(s)	390, 540
Bbv12I	GWGCWC	2 cut(s)	390, 540
BbvI	GCAGC	2 cut(s)	17, 47
BccI	CCATC	7 cut(s)	26, 197, 209, 419, 494, 533, 599
BceAI	ACGGC	2 cut(s)	290, 302
BcnI	CCSGG	2 cut(s)	324, 363
BcoDI	GTCTC	3 cut(s)	283, 470, 471
BfoI	RGCGCY	1 cut(s)	330
BisI	GCNGC	4 cut(s)	6, 36, 180, 252
BlsI	GCNGC	4 cut(s)	7, 37, 181, 253
Bme1390I	CCNGG	2 cut(s)	324, 363
Bme18I	GGWCC	1 cut(s)	576
BmgT120I	GGNCC	1 cut(s)	576
BmiI	GGNNCC	2 cut(s)	29, 328
BmrFI	CCNGG	2 cut(s)	324, 363
BpuEI	CTTGAG	4 cut(s)	7, 146, 374, 452
BpuMI	CCSGG	2 cut(s)	324, 363
BsaHI	GRCGYC	4 cut(s)	249, 261, 327, 435
BsaJI	CCNNGG	2 cut(s)	322, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse118I	RCCGGY	2 cut(s)	254, 556
Bse1I	ACTGG	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	322, 396
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	654
BseRI	GAGGAG	2 cut(s)	20, 49
BseX3I	CGGCCG	1 cut(s)	381
BseXI	GCAGC	2 cut(s)	17, 47
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	3 cut(s)	305, 383, 395
BshNI	GGYRCC	1 cut(s)	326
BsiEI	CGRYCG	1 cut(s)	384
BsiHKAI	GWGCWC	2 cut(s)	390, 540
BsiSI	CCGG	4 cut(s)	255, 324, 363, 557
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	3 cut(s)	283, 470, 471
BsmBI	CGTCTC	2 cut(s)	283, 471
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	3 cut(s)	305, 383, 395
Bsp1286I	GDGCHC	2 cut(s)	390, 540
Bsp143I	GATC	2 cut(s)	44, 471
BspACI	CCGC	5 cut(s)	90, 177, 180, 195, 252
BspANI	GGCC	3 cut(s)	305, 383, 395
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	29, 328
BspPI	GGATC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	326
BsrFI	RCCGGY	2 cut(s)	254, 556
BsrI	ACTGG	1 cut(s)	654
BssAI	RCCGGY	2 cut(s)	254, 556
BssECI	CCNNGG	2 cut(s)	322, 396
BssMI	GATC	2 cut(s)	44, 471
BssNI	GRCGYC	4 cut(s)	249, 261, 327, 435
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	2 cut(s)	271, 277
Bst6I	CTCTTC	3 cut(s)	89, 109, 317
BstACI	GRCGYC	4 cut(s)	249, 261, 327, 435
BstC8I	GCNNGC	2 cut(s)	256, 418
BstDEI	CTNAG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	2 cut(s)	47, 474
BstMAI	GTCTC	3 cut(s)	283, 470, 471
BstMBI	GATC	2 cut(s)	44, 471
BstMCI	CGRYCG	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	322, 361
BstV1I	GCAGC	2 cut(s)	17, 47
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BstZI	CGGCCG	1 cut(s)	381
BsuRI	GGCC	3 cut(s)	305, 383, 395
BtgZI	GCGATG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	661
Cac8I	GCNNGC	2 cut(s)	256, 418
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	2 cut(s)	254, 556
Cfr13I	GGNCC	1 cut(s)	576
CseI	GACGC	2 cut(s)	257, 443
Csp6I	GTAC	2 cut(s)	485, 586
CviQI	GTAC	2 cut(s)	485, 586
DdeI	CTNAG	1 cut(s)	282
DinI	GGCGCC	1 cut(s)	328
DpnI	GATC	2 cut(s)	46, 473
DpnII	GATC	2 cut(s)	44, 471
EaeI	YGGCCR	1 cut(s)	381
EagI	CGGCCG	1 cut(s)	381
Eam1104I	CTCTTC	3 cut(s)	89, 109, 317
EarI	CTCTTC	3 cut(s)	89, 109, 317
EciI	GGCGGA	3 cut(s)	79, 166, 184
Ecl136II	GAGCTC	2 cut(s)	388, 538
EclXI	CGGCCG	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	396
Eco24I	GRGCYC	2 cut(s)	390, 540
Eco47I	GGWCC	1 cut(s)	576
Eco52I	CGGCCG	1 cut(s)	381
Eco53kI	GAGCTC	2 cut(s)	388, 538
Eco57I	CTGAAG	1 cut(s)	621
EcoICRI	GAGCTC	2 cut(s)	388, 538
EcoT14I	CCWWGG	1 cut(s)	396
EcoT38I	GRGCYC	2 cut(s)	390, 540
EgeI	GGCGCC	1 cut(s)	328
EheI	GGCGCC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	396
Esp3I	CGTCTC	2 cut(s)	283, 471
FaqI	GGGAC	1 cut(s)	305
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	4 cut(s)	6, 36, 180, 252
FriOI	GRGCYC	2 cut(s)	390, 540
Fsp4HI	GCNGC	4 cut(s)	6, 36, 180, 252
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	4 cut(s)	6, 36, 180, 252
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	3 cut(s)	305, 383, 395
HapII	CCGG	4 cut(s)	255, 324, 363, 557
HgaI	GACGC	2 cut(s)	257, 443
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	4 cut(s)	249, 261, 327, 435
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	2 cut(s)	406, 430
HindII	GTYRAC	2 cut(s)	406, 430
HinfI	GANTC	4 cut(s)	227, 463, 570, 609
HpaII	CCGG	4 cut(s)	255, 324, 363, 557
HphI	GGTGA	5 cut(s)	7, 131, 265, 325, 508
Hpy166II	GTNNAC	3 cut(s)	231, 406, 430
Hpy188I	TCNGA	3 cut(s)	283, 476, 499
Hpy188III	TCNNGA	5 cut(s)	265, 442, 469, 579, 613
Hpy8I	GTNNAC	3 cut(s)	231, 406, 430
Hpy99I	CGWCG	4 cut(s)	212, 251, 263, 437
HpyAV	CCTTC	9 cut(s)	109, 295, 340, 442, 448, 451, 576, 610, 629
HpyCH4III	ACNGT	2 cut(s)	271, 277
HpyCH4IV	ACGT	2 cut(s)	261, 357
HpyCH4V	TGCA	1 cut(s)	420
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	2 cut(s)	261, 357
Hsp92I	GRCGYC	4 cut(s)	249, 261, 327, 435
HspAI	GCGC	1 cut(s)	327
KasI	GGCGCC	1 cut(s)	326
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	44, 471
LmnI	GCTCC	3 cut(s)	33, 225, 659
Lsp1109I	GCAGC	2 cut(s)	17, 47
MaeII	ACGT	2 cut(s)	261, 357
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	46, 473
MboI	GATC	2 cut(s)	44, 471
MboII	GAAGA	4 cut(s)	76, 96, 304, 614
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	2 cut(s)	390, 540
Mly113I	GGCGCC	1 cut(s)	327
MlyI	GAGTC	4 cut(s)	236, 472, 579, 618
MreI	CGCCGGCG	1 cut(s)	254
MroNI	GCCGGC	1 cut(s)	254
MspI	CCGG	4 cut(s)	255, 324, 363, 557
MspR9I	CCNGG	2 cut(s)	324, 363
NaeI	GCCGGC	1 cut(s)	256
NarI	GGCGCC	1 cut(s)	327
NciI	CCSGG	2 cut(s)	324, 363
NdeII	GATC	2 cut(s)	44, 471
NgoMIV	GCCGGC	1 cut(s)	254
NlaIV	GGNNCC	2 cut(s)	29, 328
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	3 cut(s)	255, 267, 438
PdiI	GCCGGC	1 cut(s)	256
PflFI	GACNNNGTC	1 cut(s)	292
PkrI	GCNGC	4 cut(s)	7, 37, 181, 253
PleI	GAGTC	4 cut(s)	235, 471, 578, 617
PluTI	GGCGCC	1 cut(s)	330
PpsI	GAGTC	4 cut(s)	235, 471, 578, 617
Psp124BI	GAGCTC	2 cut(s)	390, 540
PspN4I	GGNNCC	2 cut(s)	29, 328
PspPI	GGNCC	1 cut(s)	576
PsuI	RGATCY	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	292
RsaI	GTAC	2 cut(s)	486, 587
RsaNI	GTAC	2 cut(s)	485, 586
SacI	GAGCTC	2 cut(s)	390, 540
SalI	GTCGAC	1 cut(s)	404
SatI	GCNGC	4 cut(s)	6, 36, 180, 252
Sau3AI	GATC	2 cut(s)	44, 471
Sau96I	GGNCC	1 cut(s)	576
SchI	GAGTC	4 cut(s)	236, 472, 579, 618
ScrFI	CCNGG	2 cut(s)	324, 363
SduI	GDGCHC	2 cut(s)	390, 540
SfoI	GGCGCC	1 cut(s)	328
SgrAI	CRCCGGYG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	576
SmlI	CTYRAG	4 cut(s)	22, 161, 389, 467
SmoI	CTYRAG	4 cut(s)	22, 161, 389, 467
SsiI	CCGC	5 cut(s)	90, 177, 180, 195, 252
SspDI	GGCGCC	1 cut(s)	326
SstI	GAGCTC	2 cut(s)	390, 540
StyD4I	CCNGG	2 cut(s)	322, 361
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	2 cut(s)	271, 277
TaiI	ACGT	2 cut(s)	264, 360
TaqI	TCGA	4 cut(s)	246, 405, 534, 540
TaqII	GACCGA	1 cut(s)	415
TauI	GCSGC	2 cut(s)	182, 254
TscAI	CASTG	1 cut(s)	661
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	5, 35
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	461
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	1 cut(s)	661
Tth111I	GACNNNGTC	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	576
XmiI	GTMKAC	1 cut(s)	405
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.