RLG00000024283

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011853
Physical Location & Seq
Forward (+)
34078976 .. 34079987
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024283

Sequence Viewer

Length: 510 bp
ATGGCGAGCCAAAACAGCGAATATAAAGTTGGCACTCTACATATCAATGGAGGGTTTGAAGTTCGCTCGCTACAGATCAATGGCTGCGTTGAAGACTTGAAGATTTCTTCCCTCACCGGAGACCACCTCAACTTCGCCTACGAGTACTCATTCGCCCTCACTCTCTCTGCCGCTAACAACGACGTCGTTCTCGAAAACGACTTGATCCCGGTGTTCTTCAGCGACACGAAGAACTTCACGTCGTTCTGGTCAATCATCACCACGGCGAGTGGCCTCGATTTAGAGTCACTGAGATCGGATCTGAAGCGGAAAGGCGAGGATCTGATGAAGTTGGAGATGGACACCAAGGTGAAAGTGACGGTGGGAGGGAAATTGAAGAGCAAGAAGGTGGCGATTAGGGTTACATGTCAGCAAATTAGAGGGGTAGCATCGAAAGGTAAGTCTCCGTCTGTGGCTTCAGTTGCTGACTCCCATTGCAAGGTTGATATTCATATCAAGATCTGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

170

Amino Acids

18.61

Weight (kDa)

8.73

Isoelectric Point (pI)

21.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AciI CCGC 2 cut(s) 171, 307
AclWI GGATC 3 cut(s) 199, 306, 327
AcuI CTGAAG 3 cut(s) 202, 323, 441
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 478
AflIII ACRYGT 1 cut(s) 404
AgsI TTSAA 4 cut(s) 59, 92, 100, 376
AjiI CACGTC 1 cut(s) 240
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AleI CACNNNNGTG 1 cut(s) 347
Alw26I GTCTC 2 cut(s) 114, 447
AlwI GGATC 3 cut(s) 199, 306, 327
AlwNI CAGNNNCTG 1 cut(s) 464
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 84
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
Asp700I GAANNNNTTC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 3 cut(s) 106, 250, 361
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 331
BceAI ACGGC 1 cut(s) 279
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 2 cut(s) 114, 447
BfmI CTRYAG 1 cut(s) 71
BglII AGATCT 1 cut(s) 498
BisI GCNGC 2 cut(s) 85, 171
BlsI GCNGC 2 cut(s) 86, 172
BmcAI AGTACT 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 437
BpiI GAAGAC 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 111, 143
BpuMI CCSGG 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 261, 345
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse3DI GCAATG 1 cut(s) 472
BseDI CCNNGG 2 cut(s) 261, 345
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMI GCAATG 1 cut(s) 472
BseMII CTCAG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 1 cut(s) 273
BsiSI CCGG 2 cut(s) 117, 209
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 2 cut(s) 114, 447
BsnI GGCC 1 cut(s) 273
Bso31I GGTCTC 1 cut(s) 114
Bsp143I GATC 6 cut(s) 75, 204, 293, 298, 319, 498
BspACI CCGC 2 cut(s) 171, 307
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 282
BspPI GGATC 3 cut(s) 199, 306, 327
BspQI GCTCTTC 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 472
BssECI CCNNGG 2 cut(s) 261, 345
BssMI GATC 6 cut(s) 75, 204, 293, 298, 319, 498
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 371
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 7, 68
BstDEI CTNAG 1 cut(s) 290
BstDSI CCRYGG 1 cut(s) 261
BstKTI GATC 6 cut(s) 78, 207, 296, 301, 322, 501
BstMAI GTCTC 2 cut(s) 114, 447
BstMBI GATC 6 cut(s) 75, 204, 293, 298, 319, 498
BstMWI GCNNNNNNNGC 2 cut(s) 15, 461
BstNSI RCATGY 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 207
BstSFI CTRYAG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 3 cut(s) 298, 319, 498
BstYI RGATCY 3 cut(s) 298, 319, 498
BsuRI GGCC 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 261
BtrI CACGTC 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 2 cut(s) 7, 68
CaiI CAGNNNCTG 1 cut(s) 464
Csp6I GTAC 1 cut(s) 145
CviAII CATG 1 cut(s) 405
CviJI RGCY 4 cut(s) 9, 84, 273, 455
CviKI_1 RGCY 4 cut(s) 9, 84, 273, 455
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 290
DpnI GATC 6 cut(s) 77, 206, 295, 300, 321, 500
DpnII GATC 6 cut(s) 75, 204, 293, 298, 319, 498
Eam1104I CTCTTC 1 cut(s) 371
EarI CTCTTC 1 cut(s) 371
Eco130I CCWWGG 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 114
Eco57I CTGAAG 3 cut(s) 202, 323, 441
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 1 cut(s) 408
FaiI YATR 4 cut(s) 24, 42, 406, 492
FatI CATG 1 cut(s) 404
Fnu4HI GCNGC 2 cut(s) 85, 171
Fsp4HI GCNGC 2 cut(s) 85, 171
GluI GCNGC 2 cut(s) 85, 171
HaeIII GGCC 1 cut(s) 273
HapII CCGG 2 cut(s) 117, 209
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 1 cut(s) 408
HinfI GANTC 2 cut(s) 284, 467
HpaII CCGG 2 cut(s) 117, 209
HphI GGTGA 3 cut(s) 106, 250, 361
Hpy188I TCNGA 3 cut(s) 298, 303, 324
Hpy188III TCNNGA 3 cut(s) 191, 496, 502
Hpy99I CGWCG 3 cut(s) 185, 188, 244
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 2 cut(s) 183, 239
HpyCH4V TGCA 1 cut(s) 477
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 461
HpyF3I CTNAG 1 cut(s) 290
HpySE526I ACGT 2 cut(s) 183, 239
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 1 cut(s) 408
Kzo9I GATC 6 cut(s) 75, 204, 293, 298, 319, 498
LguI GCTCTTC 1 cut(s) 371
LpnPI CCDG 4 cut(s) 130, 222, 232, 487
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 437
MaeII ACGT 2 cut(s) 183, 239
MaeIII GTNAC 3 cut(s) 285, 355, 400
MalI GATC 6 cut(s) 77, 206, 295, 300, 321, 500
MboI GATC 6 cut(s) 75, 204, 293, 298, 319, 498
MboII GAAGA 6 cut(s) 99, 104, 112, 208, 241, 388
MflI RGATCY 3 cut(s) 298, 319, 498
MluCI AATT 2 cut(s) 371, 414
MlyI GAGTC 2 cut(s) 293, 461
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 8 cut(s) 44, 122, 137, 167, 284, 310, 359, 413
MroXI GAANNNNTTC 1 cut(s) 233
MslI CAYNNNNRTG 2 cut(s) 45, 347
MspI CCGG 2 cut(s) 117, 209
MspR9I CCNGG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 15, 461
NciI CCSGG 1 cut(s) 209
NdeII GATC 6 cut(s) 75, 204, 293, 298, 319, 498
NlaIII CATG 1 cut(s) 408
NmuCI GTSAC 2 cut(s) 285, 355
NspI RCATGY 1 cut(s) 408
OliI CACNNNNGTG 1 cut(s) 347
PciI ACATGT 1 cut(s) 404
PciSI GCTCTTC 1 cut(s) 371
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 233
PkrI GCNGC 2 cut(s) 86, 172
PleI GAGTC 2 cut(s) 292, 461
PpsI GAGTC 2 cut(s) 292, 461
PscI ACATGT 1 cut(s) 404
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 3 cut(s) 298, 319, 498
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 2 cut(s) 45, 347
SapI GCTCTTC 1 cut(s) 371
SatI GCNGC 2 cut(s) 85, 171
Sau3AI GATC 6 cut(s) 75, 204, 293, 298, 319, 498
ScaI AGTACT 1 cut(s) 146
SchI GAGTC 2 cut(s) 293, 461
ScrFI CCNGG 1 cut(s) 209
SetI ASST 7 cut(s) 129, 186, 242, 351, 390, 439, 483
SfaNI GCATC 1 cut(s) 437
SfcI CTRYAG 1 cut(s) 71
SmiMI CAYNNNNRTG 2 cut(s) 45, 347
Sse9I AATT 2 cut(s) 371, 414
SsiI CCGC 2 cut(s) 171, 307
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 2 cut(s) 186, 242
TaqI TCGA 3 cut(s) 192, 276, 431
TasI AATT 2 cut(s) 371, 414
TatI WGTACW 1 cut(s) 144
TauI GCSGC 1 cut(s) 173
TscAI CASTG 1 cut(s) 294
TseFI GTSAC 2 cut(s) 285, 355
TseI GCWGC 1 cut(s) 84
Tsp45I GTSAC 2 cut(s) 285, 355
TspDTI ATGAA 2 cut(s) 341, 479
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 1 cut(s) 294
XceI RCATGY 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 233
ZraI GACGTC 1 cut(s) 184
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.