Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014619.1

Orthogroup ID

OG0011853

Physical Location & Seq

Genomic Coordinates Reverse (-)

6367 .. 7173

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014619.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgacggacagagtctacccgtcttccaaggtggccacaaacggcgcggcgaacggcgccaccgcgaccaccaccgccgccgccaaccccacagccaccaagccacagccgctccggcagccgtaccgacctcagccgcagtaccgccaccgccaaaaccgccgcagcaaccggagtctctgctgctgctgctgcttctggtcgatactgatattcctgattgtggctctcctcgtcgccatcgccggcacggccctctacgtcctctaccgtccgcaccgccccgagttcaccgtcacagccctcaaaatcgggaagctcaacctcaccgacaaccccgacggcgccagctcacacctcgtcacacgcttcaacctcactatcgctcccaaaaacccgaacaaccacctcagcttcgcctacgactccttcgcgctcactctctccgccgccaacaacgacgtcgttctcggaaacggctcgatcccggccttcttcagcgacacgaagaacttcacgtcgttccggtcgatcatcaccacggcgagtgacctcgatttggagtccgtcaagtctctgagatcggatctgaagcggaagggcggggttccgatgaagttgcggatggacaccaaggtgaaggtgacggtgggagggaaattgaagagcaacaaggtggggattagggttacgtgtcagccaatcagaggggtagcaccgaaaggtaagtctccgtcggtggcttctgttgctgactcccattgcaaggttgatcttcggatcaagatctggagatggaccttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

268

Amino Acids

29.34

Weight (kDa)

10.25

Isoelectric Point (pI)

28.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11890
fragaria_vesca	FvH4_2g31800
malus_domestica	MD08G1062800.v1.1 MD15G1058900.v1.1
prunus_persica	Prupe.1G411400_v2.0.a1
pyrus_communis	pycom08g05180 pycom15g05530
rosa_chinensis	RchiOBHm_Chr6g0311021
rosa_laevigata	RLG00000010442 RLG00000024283
rosa_multiflora	Rmu_sc0014619.1_g000003 Rmu_sc0015886.1_g000003 Rmu_sc0028521.1_g000001 Rmu_sc0028522.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158100 Rroxscaffold_7G00164080
rosa_rugosa	Rorug03G0183400 Rorug06G0384800
rosa_wichuraiana	Rw6G043420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	465
AccB1I	GGYRCC	2 cut(s)	56, 344
AccBSI	CCGCTC	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	3 cut(s)	47, 65, 434
AclWI	GGATC	3 cut(s)	478, 594, 788
AcoI	YGGCCR	1 cut(s)	33
AcuI	CTGAAG	2 cut(s)	481, 611
AcyI	GRCGYC	3 cut(s)	57, 345, 462
AfaI	GTAC	2 cut(s)	125, 143
AfiI	CCNNNNNNNGG	4 cut(s)	223, 559, 707, 766
AflIII	ACRYGT	1 cut(s)	692
AgsI	TTSAA	2 cut(s)	373, 664
AjiI	CACGTC	1 cut(s)	519
AleI	CACNNNNGTG	1 cut(s)	635
AluBI	AGCT	3 cut(s)	319, 351, 414
AluI	AGCT	3 cut(s)	319, 351, 414
Alw26I	GTCTC	3 cut(s)	182, 579, 735
AlwI	GGATC	3 cut(s)	478, 594, 788
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	3 cut(s)	33, 252, 489
ApeKI	GCWGC	6 cut(s)	118, 165, 183, 186, 189, 192
ArsI	GACNNNNNNTTYG	2 cut(s)	713, 745
Asp700I	GAANNNNTTC	1 cut(s)	512
AspLEI	GCGC	4 cut(s)	47, 59, 347, 436
AspS9I	GGNCC	2 cut(s)	253, 798
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	5 cut(s)	283, 319, 529, 649, 655
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	798
BalI	TGGCCA	1 cut(s)	35
BanI	GGYRCC	2 cut(s)	56, 344
BbsI	GAAGAC	1 cut(s)	15
BbvCI	CCTCAGC	2 cut(s)	132, 410
BbvI	GCAGC	6 cut(s)	130, 170, 173, 176, 177, 179
BccI	CCATC	3 cut(s)	248, 619, 789
BceAI	ACGGC	7 cut(s)	58, 70, 106, 267, 358, 493, 558
BcgI	CGANNNNNNTGC	2 cut(s)	601, 635
BcnI	CCSGG	1 cut(s)	488
BcoDI	GTCTC	3 cut(s)	182, 579, 735
BfoI	RGCGCY	2 cut(s)	60, 348
BglI	GCCNNNNNGGC	2 cut(s)	115, 251
BglII	AGATCT	1 cut(s)	786
Bme1390I	CCNGG	1 cut(s)	488
Bme18I	GGWCC	1 cut(s)	798
BmeT110I	CYCGRG	1 cut(s)	284
BmgBI	CACGTC	1 cut(s)	519
BmgT120I	GGNCC	2 cut(s)	253, 798
BmiI	GGNNCC	3 cut(s)	58, 346, 609
BmrFI	CCNGG	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	15
Bpu10I	CCTNAGC	2 cut(s)	132, 410
BpuMI	CCSGG	1 cut(s)	488
BsaAI	YACGTR	1 cut(s)	693
BsaBI	GATNNNNATC	1 cut(s)	785
BsaHI	GRCGYC	3 cut(s)	57, 345, 462
BsaJI	CCNNGG	3 cut(s)	27, 540, 633
BsaWI	WCCGGW	2 cut(s)	171, 525
BsaXI	ACNNNNNCTCC	4 cut(s)	96, 126, 370, 400
Bsc4I	CCNNNNNNNGG	4 cut(s)	223, 559, 707, 766
Bse118I	RCCGGY	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	760
Bse8I	GATNNNNATC	1 cut(s)	785
BseDI	CCNNGG	3 cut(s)	27, 540, 633
BseGI	GGATG	1 cut(s)	630
BseJI	GATNNNNATC	1 cut(s)	785
BseLI	CCNNNNNNNGG	4 cut(s)	223, 559, 707, 766
BseMI	GCAATG	1 cut(s)	760
BseMII	CTCAG	3 cut(s)	146, 424, 569
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	6 cut(s)	130, 170, 173, 176, 177, 179
Bsh1236I	CGCG	3 cut(s)	47, 65, 434
Bsh1285I	CGRYCG	1 cut(s)	530
BshFI	GGCC	3 cut(s)	35, 254, 491
BshNI	GGYRCC	2 cut(s)	56, 344
BsiEI	CGRYCG	1 cut(s)	530
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	5 cut(s)	115, 172, 246, 488, 526
BslI	CCNNNNNNNGG	4 cut(s)	223, 559, 707, 766
BsmAI	GTCTC	3 cut(s)	182, 579, 735
BsnI	GGCC	3 cut(s)	35, 254, 491
BsoBI	CYCGRG	1 cut(s)	284
Bsp143I	GATC	7 cut(s)	483, 531, 581, 586, 772, 780, 786
BspANI	GGCC	3 cut(s)	35, 254, 491
BspCNI	CTCAG	3 cut(s)	145, 423, 570
BspFNI	CGCG	3 cut(s)	47, 65, 434
BspLI	GGNNCC	3 cut(s)	58, 346, 609
BspPI	GGATC	3 cut(s)	478, 594, 788
BspQI	GCTCTTC	1 cut(s)	659
BspT107I	GGYRCC	2 cut(s)	56, 344
BsrBI	CCGCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	760
BsrFI	RCCGGY	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	3 cut(s)	27, 540, 633
BssMI	GATC	7 cut(s)	483, 531, 581, 586, 772, 780, 786
BssNI	GRCGYC	3 cut(s)	57, 345, 462
BssT1I	CCWWGG	2 cut(s)	27, 633
Bst4CI	ACNGT	3 cut(s)	272, 295, 649
Bst6I	CTCTTC	1 cut(s)	659
BstACI	GRCGYC	3 cut(s)	57, 345, 462
BstBAI	YACGTR	1 cut(s)	693
BstC8I	GCNNGC	2 cut(s)	247, 349
BstDEI	CTNAG	3 cut(s)	132, 410, 578
BstDSI	CCRYGG	1 cut(s)	540
BstF5I	GGATG	1 cut(s)	630
BstFNI	CGCG	3 cut(s)	47, 65, 434
BstH2I	RGCGCY	2 cut(s)	60, 348
BstHHI	GCGC	4 cut(s)	47, 59, 347, 436
BstKTI	GATC	7 cut(s)	486, 534, 584, 589, 775, 783, 789
BstMAI	GTCTC	3 cut(s)	182, 579, 735
BstMBI	GATC	7 cut(s)	483, 531, 581, 586, 772, 780, 786
BstMCI	CGRYCG	1 cut(s)	530
BstMWI	GCNNNNNNNGC	9 cut(s)	56, 109, 115, 118, 159, 189, 192, 251, 749
BstSCI	CCNGG	1 cut(s)	486
BstUI	CGCG	3 cut(s)	47, 65, 434
BstV1I	GCAGC	6 cut(s)	130, 170, 173, 176, 177, 179
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	2 cut(s)	586, 786
BstYI	RGATCY	2 cut(s)	586, 786
BsuRI	GGCC	3 cut(s)	35, 254, 491
BtgI	CCRYGG	1 cut(s)	540
BtgZI	GCGATG	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	519
BtsCI	GGATG	1 cut(s)	630
Cac8I	GCNNGC	2 cut(s)	247, 349
CfoI	GCGC	4 cut(s)	47, 59, 347, 436
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	253, 798
Csp6I	GTAC	2 cut(s)	124, 142
CviQI	GTAC	2 cut(s)	124, 142
DdeI	CTNAG	3 cut(s)	132, 410, 578
DinI	GGCGCC	2 cut(s)	58, 346
DpnI	GATC	7 cut(s)	485, 533, 583, 588, 774, 782, 788
DpnII	GATC	7 cut(s)	483, 531, 581, 586, 772, 780, 786
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	659
EarI	CTCTTC	1 cut(s)	659
EciI	GGCGGA	1 cut(s)	436
Eco130I	CCWWGG	2 cut(s)	27, 633
Eco47I	GGWCC	1 cut(s)	798
Eco57I	CTGAAG	2 cut(s)	481, 611
Eco88I	CYCGRG	1 cut(s)	284
EcoT14I	CCWWGG	2 cut(s)	27, 633
EgeI	GGCGCC	2 cut(s)	58, 346
EheI	GGCGCC	2 cut(s)	58, 346
ErhI	CCWWGG	2 cut(s)	27, 633
FauI	CCCGC	1 cut(s)	596
FblI	GTMKAC	1 cut(s)	15
FokI	GGATG	1 cut(s)	637
GlaI	GCGC	4 cut(s)	46, 58, 346, 435
HaeII	RGCGCY	2 cut(s)	60, 348
HaeIII	GGCC	3 cut(s)	35, 254, 491
HapII	CCGG	5 cut(s)	115, 172, 246, 488, 526
HhaI	GCGC	4 cut(s)	47, 59, 347, 436
Hin1I	GRCGYC	3 cut(s)	57, 345, 462
Hin6I	GCGC	4 cut(s)	45, 57, 345, 434
HinP1I	GCGC	4 cut(s)	45, 57, 345, 434
HinfI	GANTC	5 cut(s)	12, 175, 425, 563, 755
HpaII	CCGG	5 cut(s)	115, 172, 246, 488, 526
HphI	GGTGA	5 cut(s)	283, 319, 529, 649, 655
Hpy166II	GTNNAC	2 cut(s)	16, 291
Hpy188I	TCNGA	7 cut(s)	473, 579, 586, 591, 612, 707, 780
Hpy188III	TCNNGA	4 cut(s)	217, 313, 784, 790
Hpy8I	GTNNAC	2 cut(s)	16, 291
Hpy99I	CGWCG	6 cut(s)	239, 344, 464, 467, 523, 739
HpyAV	CCTTC	4 cut(s)	439, 502, 592, 634
HpyCH4III	ACNGT	3 cut(s)	272, 295, 649
HpyCH4IV	ACGT	4 cut(s)	261, 462, 518, 692
HpyCH4V	TGCA	1 cut(s)	765
HpyF10VI	GCNNNNNNNGC	9 cut(s)	56, 109, 115, 118, 159, 189, 192, 251, 749
HpyF3I	CTNAG	3 cut(s)	132, 410, 578
HpySE526I	ACGT	4 cut(s)	261, 462, 518, 692
Hsp92I	GRCGYC	3 cut(s)	57, 345, 462
HspAI	GCGC	4 cut(s)	45, 57, 345, 434
KasI	GGCGCC	2 cut(s)	56, 344
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
Kzo9I	GATC	7 cut(s)	483, 531, 581, 586, 772, 780, 786
LguI	GCTCTTC	1 cut(s)	659
LmnI	GCTCC	2 cut(s)	117, 391
LpnPI	CCDG	9 cut(s)	128, 184, 185, 230, 259, 361, 501, 539, 775
Lsp1109I	GCAGC	6 cut(s)	130, 170, 173, 176, 177, 179
MaeII	ACGT	4 cut(s)	261, 462, 518, 692
MaeIII	GTNAC	5 cut(s)	295, 361, 548, 643, 688
MalI	GATC	7 cut(s)	485, 533, 583, 588, 774, 782, 788
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	7 cut(s)	483, 531, 581, 586, 772, 780, 786
MboII	GAAGA	5 cut(s)	15, 487, 520, 676, 767
MflI	RGATCY	2 cut(s)	586, 786
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	1 cut(s)	659
MluNI	TGGCCA	1 cut(s)	35
Mly113I	GGCGCC	2 cut(s)	57, 345
MlyI	GAGTC	5 cut(s)	21, 184, 419, 572, 749
Mox20I	TGGCCA	1 cut(s)	35
MroNI	GCCGGC	1 cut(s)	245
MroXI	GAANNNNTTC	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	1 cut(s)	805
MslI	CAYNNNNRTG	1 cut(s)	635
Msp20I	TGGCCA	1 cut(s)	35
MspI	CCGG	5 cut(s)	115, 172, 246, 488, 526
MspR9I	CCNGG	1 cut(s)	488
MvnI	CGCG	3 cut(s)	47, 65, 434
MwoI	GCNNNNNNNGC	9 cut(s)	56, 109, 115, 118, 159, 189, 192, 251, 749
NaeI	GCCGGC	1 cut(s)	247
NarI	GGCGCC	2 cut(s)	57, 345
NciI	CCSGG	1 cut(s)	488
NdeII	GATC	7 cut(s)	483, 531, 581, 586, 772, 780, 786
NgoMIV	GCCGGC	1 cut(s)	245
NlaIV	GGNNCC	3 cut(s)	58, 346, 609
NmuCI	GTSAC	4 cut(s)	295, 361, 548, 643
OliI	CACNNNNGTG	1 cut(s)	635
PciSI	GCTCTTC	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	1 cut(s)	527
PdiI	GCCGGC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	512
PflFI	GACNNNGTC	1 cut(s)	11
PleI	GAGTC	5 cut(s)	20, 183, 419, 571, 749
PluTI	GGCGCC	2 cut(s)	60, 348
PpsI	GAGTC	5 cut(s)	20, 183, 419, 571, 749
Ppu21I	YACGTR	1 cut(s)	693
PspN4I	GGNNCC	3 cut(s)	58, 346, 609
PspPI	GGNCC	2 cut(s)	253, 798
PsuI	RGATCY	2 cut(s)	586, 786
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	2 cut(s)	125, 143
RsaNI	GTAC	2 cut(s)	124, 142
RseI	CAYNNNNRTG	1 cut(s)	635
SapI	GCTCTTC	1 cut(s)	659
SaqAI	TTAA	1 cut(s)	805
Sau3AI	GATC	7 cut(s)	483, 531, 581, 586, 772, 780, 786
Sau96I	GGNCC	2 cut(s)	253, 798
SchI	GAGTC	5 cut(s)	21, 184, 419, 572, 749
ScrFI	CCNGG	1 cut(s)	488
SfoI	GGCGCC	2 cut(s)	58, 346
SinI	GGWCC	1 cut(s)	798
SmiMI	CAYNNNNRTG	1 cut(s)	635
Sse9I	AATT	1 cut(s)	659
SspDI	GGCGCC	2 cut(s)	56, 344
StyD4I	CCNGG	1 cut(s)	486
StyI	CCWWGG	2 cut(s)	27, 633
TaaI	ACNGT	3 cut(s)	272, 295, 649
TaiI	ACGT	4 cut(s)	264, 465, 521, 695
TaqI	TCGA	4 cut(s)	203, 482, 530, 555
TasI	AATT	1 cut(s)	659
TauI	GCSGC	7 cut(s)	50, 80, 83, 112, 139, 165, 452
Tru1I	TTAA	1 cut(s)	805
Tru9I	TTAA	1 cut(s)	805
TseFI	GTSAC	4 cut(s)	295, 361, 548, 643
TseI	GCWGC	6 cut(s)	118, 165, 183, 186, 189, 192
Tsp45I	GTSAC	4 cut(s)	295, 361, 548, 643
TspDTI	ATGAA	1 cut(s)	629
TspGWI	ACGGA	3 cut(s)	20, 556, 723
Tth111I	GACNNNGTC	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	798
XmiI	GTMKAC	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	512
ZraI	GACGTC	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.