Rroxscaffold_7G00164080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011853
Physical Location & Seq
Forward (+)
6143091 .. 6150745
7655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00164080.1

Sequence Viewer

Length: 816 bp
ATGGCCGCATTTCTCGTTGACAATATTGCTAGATTAATGAAAATAGGTCGTCTAAAAAGTAATGTTTTTTCCAATGGTGATTTAGTTAAGGGAGGCGCAGTCTTTGATGTCAAAAACTTCACCAATTTTTGGAAGTCCCCATACCGCCTCGGCTTCGCCTACGAGTACTCCTTCGCCCTCACTCTCTCTGCCCCTAACAACAACATCGTTCCCGAAAACGGCTCGATCCTGGCGTTCTTCGGCGACACGACGAACTTCACGTCGTTACGGTCGATCATCACCACGGCGAGTGACCTCAATTTGGAGTCGGCGAGATCGGATCTGAAGCGGAAGGGCGGGGTTCCTATGAAGTTGGAGATGGACACCAAGGTGAAAGTGATGGTGGGAGGGAAATTGAAGAGCAAGAAGTCCCGCTTTGAGTACGAGTCGAAGTTTCCGAGAGAACCCAATCCAAATCCAAATCCAAATCCCAATCCCAATTTTAATTTCAATTTCGTCCTCCAAAATGAAAGACATAGTCTTCTTGAAGCCTCGCTTGTCAAAGATGCGAAATCGGCGATGAAGTGCGCCGCCAATCCTTTCGTTAAGGTCAACGGCGTCGGCGCACAAGAAAATCTGGAAGTACCTAAAGATAAGACAAAAAATACCTTACAGAAGGTACATGAAAAAGTAGGGGATACAAATTTTGATAATAATGAAAGTACACAAGACTGCTTGCAGGATATTGAAAAGAAAAGGTTGGAGGGAAATGTTGCTAGCGTTCCTCAAATAAAACAAACTCAAAAGAATGACAAAGGAATGTTTCCAAATTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

271

Amino Acids

30.19

Weight (kDa)

9.47

Isoelectric Point (pI)

23.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 129
AciI CCGC 6 cut(s) 6, 145, 328, 336, 412, 570
AclWI GGATC 2 cut(s) 220, 327
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 682, 808
AcuI CTGAAG 1 cut(s) 344
AcyI GRCGYC 1 cut(s) 597
AfaI GTAC 5 cut(s) 167, 422, 624, 660, 703
AfiI CCNNNNNNNGG 3 cut(s) 129, 218, 301
AgsI TTSAA 4 cut(s) 397, 490, 527, 728
AjiI CACGTC 1 cut(s) 261
AjnI CCWGG 1 cut(s) 228
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AleI CACNNNNGTG 1 cut(s) 368
AlwI GGATC 2 cut(s) 220, 327
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 682, 808
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
AseI ATTAAT 1 cut(s) 35
AspLEI GCGC 3 cut(s) 98, 569, 605
AsuHPI GGTGA 4 cut(s) 89, 112, 271, 382
AsuNHI GCTAGC 1 cut(s) 755
BarI GAAGNNNNNNTAC 2 cut(s) 125, 157
BbsI GAAGAC 1 cut(s) 512
BccI CCATC 2 cut(s) 352, 373
BceAI ACGGC 3 cut(s) 235, 300, 610
BciT130I CCWGG 1 cut(s) 230
BciVI GTATCC 1 cut(s) 670
BfaI CTAG 2 cut(s) 30, 756
BfuI GTATCC 1 cut(s) 670
BisI GCNGC 2 cut(s) 6, 570
BlsI GCNGC 2 cut(s) 7, 571
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 342
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 535
BmtI GCTAGC 1 cut(s) 759
BpiI GAAGAC 1 cut(s) 512
BsaHI GRCGYC 1 cut(s) 597
BsaJI CCNNGG 3 cut(s) 148, 282, 366
BsaXI ACNNNNNCTCC 4 cut(s) 84, 114, 152, 182
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 218, 301
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 3 cut(s) 148, 282, 366
BseLI CCNNNNNNNGG 3 cut(s) 129, 218, 301
Bsh1285I CGRYCG 1 cut(s) 272
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 272
BslFI GGGAC 2 cut(s) 121, 394
BslI CCNNNNNNNGG 3 cut(s) 129, 218, 301
BsmFI GGGAC 2 cut(s) 121, 394
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 4 cut(s) 225, 273, 314, 319
BspACI CCGC 6 cut(s) 6, 145, 328, 336, 412, 570
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 342
BspOI GCTAGC 1 cut(s) 759
BspPI GGATC 2 cut(s) 220, 327
BspQI GCTCTTC 1 cut(s) 392
BssECI CCNNGG 3 cut(s) 148, 282, 366
BssMI GATC 4 cut(s) 225, 273, 314, 319
BssNI GRCGYC 1 cut(s) 597
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 392
BstACI GRCGYC 1 cut(s) 597
BstC8I GCNNGC 2 cut(s) 716, 757
BstDSI CCRYGG 1 cut(s) 282
BstHHI GCGC 3 cut(s) 98, 569, 605
BstKTI GATC 4 cut(s) 228, 276, 317, 322
BstMBI GATC 4 cut(s) 225, 273, 314, 319
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 1 cut(s) 554
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BsuI GTATCC 1 cut(s) 670
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 282
BtgZI GCGATG 1 cut(s) 572
BtrI CACGTC 1 cut(s) 261
Cac8I GCNNGC 2 cut(s) 716, 757
CfoI GCGC 3 cut(s) 98, 569, 605
CseI GACGC 1 cut(s) 586
Csp6I GTAC 5 cut(s) 166, 421, 623, 659, 702
CviAII CATG 1 cut(s) 662
CviJI RGCY 4 cut(s) 5, 153, 222, 530
CviKI_1 RGCY 4 cut(s) 5, 153, 222, 530
CviQI GTAC 5 cut(s) 166, 421, 623, 659, 702
DpnI GATC 4 cut(s) 227, 275, 316, 321
DpnII GATC 4 cut(s) 225, 273, 314, 319
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 366
Eco57I CTGAAG 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 1 cut(s) 665
FaiI YATR 4 cut(s) 142, 347, 516, 663
FalI AAGNNNNNCTT 4 cut(s) 398, 430, 519, 551
FaqI GGGAC 2 cut(s) 121, 394
FatI CATG 1 cut(s) 661
FauI CCCGC 2 cut(s) 329, 419
Fnu4HI GCNGC 2 cut(s) 6, 570
Fsp4HI GCNGC 2 cut(s) 6, 570
FspBI CTAG 2 cut(s) 30, 756
GlaI GCGC 3 cut(s) 97, 568, 604
GluI GCNGC 2 cut(s) 6, 570
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 586
HhaI GCGC 3 cut(s) 98, 569, 605
Hin1I GRCGYC 1 cut(s) 597
Hin1II CATG 1 cut(s) 665
Hin6I GCGC 3 cut(s) 96, 567, 603
HinP1I GCGC 3 cut(s) 96, 567, 603
HincII GTYRAC 2 cut(s) 19, 592
HindII GTYRAC 2 cut(s) 19, 592
HinfI GANTC 2 cut(s) 305, 425
HphI GGTGA 4 cut(s) 89, 112, 271, 382
Hpy166II GTNNAC 3 cut(s) 19, 592, 704
Hpy188I TCNGA 3 cut(s) 319, 324, 438
Hpy188III TCNNGA 3 cut(s) 212, 524, 617
Hpy8I GTNNAC 3 cut(s) 19, 592, 704
Hpy99I CGWCG 3 cut(s) 253, 265, 602
HpyAV CCTTC 3 cut(s) 181, 325, 649
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4IV ACGT 1 cut(s) 260
HpyCH4V TGCA 1 cut(s) 718
HpyF10VI GCNNNNNNNGC 1 cut(s) 554
HpySE526I ACGT 1 cut(s) 260
Hsp92I GRCGYC 1 cut(s) 597
Hsp92II CATG 1 cut(s) 665
HspAI GCGC 3 cut(s) 96, 567, 603
Kzo9I GATC 4 cut(s) 225, 273, 314, 319
LguI GCTCTTC 1 cut(s) 392
LpnPI CCDG 4 cut(s) 215, 242, 602, 704
LweI GCATC 1 cut(s) 535
MaeI CTAG 2 cut(s) 30, 756
MaeII ACGT 1 cut(s) 260
MaeIII GTNAC 2 cut(s) 264, 290
MalI GATC 4 cut(s) 227, 275, 316, 321
MboI GATC 4 cut(s) 225, 273, 314, 319
MboII GAAGA 3 cut(s) 229, 409, 512
MflI RGATCY 1 cut(s) 319
MluCI AATT 8 cut(s) 124, 298, 392, 478, 484, 490, 682, 808
MlyI GAGTC 2 cut(s) 314, 434
MmeI TCCRAC 2 cut(s) 333, 720
MnlI CCTC 9 cut(s) 86, 158, 188, 305, 380, 509, 541, 736, 774
MseI TTAA 4 cut(s) 35, 87, 483, 585
MslI CAYNNNNRTG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 554
NdeII GATC 4 cut(s) 225, 273, 314, 319
NheI GCTAGC 1 cut(s) 755
NlaIII CATG 1 cut(s) 665
NlaIV GGNNCC 1 cut(s) 342
NmeAIII GCCGAG 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 290
OliI CACNNNNGTG 1 cut(s) 368
PciSI GCTCTTC 1 cut(s) 392
PcsI WCGNNNNNNNCGW 4 cut(s) 230, 257, 269, 434
PflFI GACNNNGTC 1 cut(s) 516
PflMI CCANNNNNTGG 1 cut(s) 129
PkrI GCNGC 2 cut(s) 7, 571
PleI GAGTC 2 cut(s) 313, 433
PpsI GAGTC 2 cut(s) 313, 433
PshBI ATTAAT 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 342
PsuI RGATCY 1 cut(s) 319
PsyI GACNNNGTC 1 cut(s) 516
RsaI GTAC 5 cut(s) 167, 422, 624, 660, 703
RsaNI GTAC 5 cut(s) 166, 421, 623, 659, 702
RseI CAYNNNNRTG 1 cut(s) 368
SapI GCTCTTC 1 cut(s) 392
SaqAI TTAA 4 cut(s) 35, 87, 483, 585
SatI GCNGC 2 cut(s) 6, 570
Sau3AI GATC 4 cut(s) 225, 273, 314, 319
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 2 cut(s) 314, 434
ScrFI CCNGG 1 cut(s) 230
SetI ASST 9 cut(s) 49, 263, 297, 372, 591, 628, 650, 660, 740
SfaNI GCATC 1 cut(s) 535
SmiMI CAYNNNNRTG 1 cut(s) 368
Sse9I AATT 8 cut(s) 124, 298, 392, 478, 484, 490, 682, 808
SsiI CCGC 6 cut(s) 6, 145, 328, 336, 412, 570
SspI AATATT 1 cut(s) 25
SspMI CTAG 2 cut(s) 30, 756
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 270
TaiI ACGT 1 cut(s) 263
TaqI TCGA 3 cut(s) 224, 272, 428
TasI AATT 8 cut(s) 124, 298, 392, 478, 484, 490, 682, 808
TatI WGTACW 2 cut(s) 165, 701
TauI GCSGC 2 cut(s) 8, 572
Tru1I TTAA 4 cut(s) 35, 87, 483, 585
Tru9I TTAA 4 cut(s) 35, 87, 483, 585
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 6 cut(s) 53, 362, 522, 575, 678, 711
Tth111I GACNNNGTC 1 cut(s) 516
Van91I CCANNNNNTGG 1 cut(s) 129
VspI ATTAAT 1 cut(s) 35
XapI RAATTY 2 cut(s) 682, 808
XspI CTAG 2 cut(s) 30, 756
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.