RLG00000010442

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011853
Physical Location & Seq
Reverse (-)
1657245 .. 1658712
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010442

Sequence Viewer

Length: 1002 bp
ATGACGGACAGAGTCTACCCGTCTTCCAAGGTGGCCACAAACGGCGCCTCGAACGGCTCCACCGCTACCACCACCGCCGCCAACCCCACAGCCACTAAGCCACAGCCGCTCCGGCAGCCGTACCGACCTCAGCAGCAGTACCGCCACCGCCACAACCGCCGCAGCAACCGGAGTCTCTGCTGCTGCTGCTGCTTCTGGTCGATACTGATATTCCTGATTGTGGCTCTCCTCGTCGCCATTGCCGGCACGGCCCTCTACGTCCTCTACCGTCCTCACCGCCCCGAGTTCACCGTCACAGCCCTCAAAATCGGGAAGCTCAACCTCACCGACAACCCCGACGGCGCCAGCTCACACCTCGTCACACTCTTCAACCTCACTATCGCTCCCAAAAACCCGAACAACCACCTCAGCTTCGCCTACGACTCCTTCGCGCTCACTCTCTCCGCCGCCAACAACGACGTCTTTCTCGGGAACGGCTCGATCCCTGCGTTCTTCAGCGACACGAAGAACTTCACGTCGTTCCGTTCGATCATCACCACGGCGAGTGACCTCGATTTGGAGTCGGTCAAGTCTCTGAGATCTGATCTGAAGCGGAAGGGCGGGGTTCCGATGAAGTTGCAGATGGACACCAAGGTGAAGGTGACGGTGGGAGGGAAATTGAAGAGCAAGAAGGTTGGGATTAGGGTTACGTGTCAGCAAATCAGAGGGGCAGCACCGAAAGGTAAGTCTCCGTCGGTGGCTTCTGTTGCTGACTCCCATTGCAAGAGTTACAGACCTCATTCTTTAGTTTCTAACCAATTACGACTGCTTGGTCACTGTGATCGCCCAGAGCTTGAAGCTTCTCACTTGATACCTGTGACCTGTGAGTTTGGTGGTCCACTTTTAACTCTGGCTGGTACTAGAAATCTAAATGCACCCACAAGTTTGGGTGACATGAATTTGAGGCTTCCAGCTTCATGTACTTGCCCGTTGCCAATTAATACATATTTTAGTGCTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

334

Amino Acids

36.13

Weight (kDa)

9.8

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 129 - 231 3.1e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 810
AatII GACGTC 1 cut(s) 462
AccB1I GGYRCC 2 cut(s) 44, 341
AccBSI CCGCTC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 431
AclWI GGATC 1 cut(s) 475
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 1 cut(s) 937
AcuI CTGAAG 2 cut(s) 478, 608
AcyI GRCGYC 3 cut(s) 45, 342, 459
AfaI GTAC 4 cut(s) 122, 140, 898, 961
AfiI CCNNNNNNNGG 2 cut(s) 220, 556
AflIII ACRYGT 1 cut(s) 689
AgsI TTSAA 3 cut(s) 370, 661, 836
AjiI CACGTC 1 cut(s) 516
AleI CACNNNNGTG 1 cut(s) 632
AluBI AGCT 6 cut(s) 316, 348, 411, 832, 839, 953
AluI AGCT 6 cut(s) 316, 348, 411, 832, 839, 953
Alw26I GTCTC 3 cut(s) 179, 576, 732
AlwI GGATC 1 cut(s) 475
Ama87I CYCGRG 2 cut(s) 281, 467
AoxI GGCC 2 cut(s) 33, 249
ApeKI GCWGC 8 cut(s) 115, 133, 162, 180, 183, 186, 189, 710
ApoI RAATTY 1 cut(s) 937
ArsI GACNNNNNNTTYG 2 cut(s) 710, 742
AseI ATTAAT 1 cut(s) 978
Asp700I GAANNNNTTC 1 cut(s) 509
AspLEI GCGC 3 cut(s) 47, 344, 433
AspS9I GGNCC 2 cut(s) 250, 875
AsuHPI GGTGA 7 cut(s) 266, 280, 316, 526, 646, 652, 941
AvaI CYCGRG 2 cut(s) 281, 467
AvaII GGWCC 1 cut(s) 875
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 2 cut(s) 44, 341
BbsI GAAGAC 1 cut(s) 15
BbvCI CCTCAGC 2 cut(s) 129, 407
BbvI GCAGC 8 cut(s) 127, 145, 167, 170, 173, 174, 176, 722
BccI CCATC 1 cut(s) 616
BceAI ACGGC 7 cut(s) 58, 70, 103, 264, 355, 490, 555
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BcoDI GTCTC 3 cut(s) 179, 576, 732
BfaI CTAG 1 cut(s) 900
BfoI RGCGCY 2 cut(s) 48, 345
BglI GCCNNNNNGGC 2 cut(s) 112, 248
BglII AGATCT 1 cut(s) 578
Bme18I GGWCC 1 cut(s) 875
BmeT110I CYCGRG 2 cut(s) 281, 467
BmgBI CACGTC 1 cut(s) 516
BmgT120I GGNCC 2 cut(s) 250, 875
BmiI GGNNCC 4 cut(s) 46, 58, 343, 606
BpiI GAAGAC 1 cut(s) 15
Bpu10I CCTNAGC 2 cut(s) 129, 407
BsaAI YACGTR 1 cut(s) 690
BsaHI GRCGYC 3 cut(s) 45, 342, 459
BsaJI CCNNGG 3 cut(s) 27, 537, 630
BsaWI WCCGGW 1 cut(s) 168
BsaXI ACNNNNNCTCC 4 cut(s) 93, 123, 367, 397
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 556
Bse118I RCCGGY 1 cut(s) 242
Bse3DI GCAATG 2 cut(s) 237, 757
BseDI CCNNGG 3 cut(s) 27, 537, 630
BseLI CCNNNNNNNGG 2 cut(s) 220, 556
BseMI GCAATG 2 cut(s) 237, 757
BseMII CTCAG 3 cut(s) 143, 421, 566
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 8 cut(s) 127, 145, 167, 170, 173, 174, 176, 722
Bsh1236I CGCG 1 cut(s) 431
BshFI GGCC 2 cut(s) 35, 251
BshNI GGYRCC 2 cut(s) 44, 341
BsiHKCI CYCGRG 2 cut(s) 281, 467
BsiSI CCGG 3 cut(s) 112, 169, 243
BslI CCNNNNNNNGG 2 cut(s) 220, 556
BsmAI GTCTC 3 cut(s) 179, 576, 732
BsnI GGCC 2 cut(s) 35, 251
BsoBI CYCGRG 2 cut(s) 281, 467
Bsp143I GATC 5 cut(s) 480, 528, 578, 583, 820
BspANI GGCC 2 cut(s) 35, 251
BspCNI CTCAG 3 cut(s) 142, 420, 567
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 4 cut(s) 46, 58, 343, 606
BspPI GGATC 1 cut(s) 475
BspQI GCTCTTC 1 cut(s) 656
BspT107I GGYRCC 2 cut(s) 44, 341
BsrBI CCGCTC 1 cut(s) 109
BsrDI GCAATG 2 cut(s) 237, 757
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 27, 537, 630
BssMI GATC 5 cut(s) 480, 528, 578, 583, 820
BssNI GRCGYC 3 cut(s) 45, 342, 459
BssT1I CCWWGG 2 cut(s) 27, 630
Bst4CI ACNGT 4 cut(s) 269, 292, 646, 818
Bst6I CTCTTC 2 cut(s) 371, 656
BstACI GRCGYC 3 cut(s) 45, 342, 459
BstBAI YACGTR 1 cut(s) 690
BstC8I GCNNGC 2 cut(s) 244, 346
BstDEI CTNAG 4 cut(s) 96, 129, 407, 575
BstDSI CCRYGG 1 cut(s) 537
BstFNI CGCG 1 cut(s) 431
BstH2I RGCGCY 2 cut(s) 48, 345
BstHHI GCGC 3 cut(s) 47, 344, 433
BstKTI GATC 5 cut(s) 483, 531, 581, 586, 823
BstMAI GTCTC 3 cut(s) 179, 576, 732
BstMBI GATC 5 cut(s) 480, 528, 578, 583, 820
BstMWI GCNNNNNNNGC 8 cut(s) 106, 112, 115, 156, 186, 189, 248, 746
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 8 cut(s) 127, 145, 167, 170, 173, 174, 176, 722
BstV2I GAAGAC 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 578
BstXI CCANNNNNNTGG 1 cut(s) 925
BstYI RGATCY 1 cut(s) 578
BsuRI GGCC 2 cut(s) 35, 251
BtgI CCRYGG 1 cut(s) 537
BtrI CACGTC 1 cut(s) 516
BtsIMutI CAGTG 1 cut(s) 814
Cac8I GCNNGC 2 cut(s) 244, 346
CfoI GCGC 3 cut(s) 47, 344, 433
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 2 cut(s) 250, 875
Csp6I GTAC 4 cut(s) 121, 139, 897, 960
CviAII CATG 2 cut(s) 934, 957
CviQI GTAC 4 cut(s) 121, 139, 897, 960
DdeI CTNAG 4 cut(s) 96, 129, 407, 575
DinI GGCGCC 2 cut(s) 46, 343
DpnI GATC 5 cut(s) 482, 530, 580, 585, 822
DpnII GATC 5 cut(s) 480, 528, 578, 583, 820
DrdI GACNNNNNNGTC 1 cut(s) 810
DseDI GACNNNNNNGTC 1 cut(s) 810
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 2 cut(s) 371, 656
EarI CTCTTC 2 cut(s) 371, 656
EciI GGCGGA 1 cut(s) 433
Eco130I CCWWGG 2 cut(s) 27, 630
Eco47I GGWCC 1 cut(s) 875
Eco57I CTGAAG 2 cut(s) 478, 608
Eco88I CYCGRG 2 cut(s) 281, 467
EcoT14I CCWWGG 2 cut(s) 27, 630
EgeI GGCGCC 2 cut(s) 46, 343
EheI GGCGCC 2 cut(s) 46, 343
ErhI CCWWGG 2 cut(s) 27, 630
FaeI CATG 2 cut(s) 937, 960
FaiI YATR 4 cut(s) 935, 958, 985, 1000
FatI CATG 2 cut(s) 933, 956
FauI CCCGC 1 cut(s) 593
FblI GTMKAC 1 cut(s) 15
FspBI CTAG 1 cut(s) 900
GlaI GCGC 3 cut(s) 46, 343, 432
HaeII RGCGCY 2 cut(s) 48, 345
HaeIII GGCC 2 cut(s) 35, 251
HapII CCGG 3 cut(s) 112, 169, 243
HhaI GCGC 3 cut(s) 47, 344, 433
Hin1I GRCGYC 3 cut(s) 45, 342, 459
Hin1II CATG 2 cut(s) 937, 960
Hin6I GCGC 3 cut(s) 45, 342, 431
HinP1I GCGC 3 cut(s) 45, 342, 431
HindIII AAGCTT 1 cut(s) 837
HinfI GANTC 5 cut(s) 12, 172, 422, 560, 752
HpaII CCGG 3 cut(s) 112, 169, 243
HphI GGTGA 7 cut(s) 266, 280, 316, 526, 646, 652, 941
Hpy166II GTNNAC 3 cut(s) 16, 288, 878
Hpy188I TCNGA 5 cut(s) 576, 583, 588, 609, 704
Hpy188III TCNNGA 3 cut(s) 214, 310, 469
Hpy8I GTNNAC 3 cut(s) 16, 288, 878
Hpy99I CGWCG 5 cut(s) 236, 341, 461, 520, 736
HpyAV CCTTC 4 cut(s) 436, 589, 631, 664
HpyCH4III ACNGT 4 cut(s) 269, 292, 646, 818
HpyCH4IV ACGT 4 cut(s) 258, 459, 515, 689
HpyCH4V TGCA 3 cut(s) 619, 762, 914
HpyF10VI GCNNNNNNNGC 8 cut(s) 106, 112, 115, 156, 186, 189, 248, 746
HpyF3I CTNAG 4 cut(s) 96, 129, 407, 575
HpySE526I ACGT 4 cut(s) 258, 459, 515, 689
Hsp92I GRCGYC 3 cut(s) 45, 342, 459
Hsp92II CATG 2 cut(s) 937, 960
HspAI GCGC 3 cut(s) 45, 342, 431
KasI GGCGCC 2 cut(s) 44, 341
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Kzo9I GATC 5 cut(s) 480, 528, 578, 583, 820
LguI GCTCTTC 1 cut(s) 656
LmnI GCTCC 3 cut(s) 62, 114, 388
Lsp1109I GCAGC 8 cut(s) 127, 145, 167, 170, 173, 174, 176, 722
MaeI CTAG 1 cut(s) 900
MaeII ACGT 4 cut(s) 258, 459, 515, 689
MaeIII GTNAC 9 cut(s) 292, 358, 545, 640, 685, 767, 812, 856, 929
MalI GATC 5 cut(s) 482, 530, 580, 585, 822
MbiI CCGCTC 1 cut(s) 109
MboI GATC 5 cut(s) 480, 528, 578, 583, 820
MboII GAAGA 5 cut(s) 15, 358, 484, 517, 673
MflI RGATCY 1 cut(s) 578
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 4 cut(s) 656, 797, 937, 975
MluNI TGGCCA 1 cut(s) 35
Mly113I GGCGCC 2 cut(s) 45, 342
MlyI GAGTC 5 cut(s) 21, 181, 416, 569, 746
Mox20I TGGCCA 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 242
MroXI GAANNNNTTC 1 cut(s) 509
MscI TGGCCA 1 cut(s) 35
MseI TTAA 2 cut(s) 884, 978
MslI CAYNNNNRTG 1 cut(s) 632
Msp20I TGGCCA 1 cut(s) 35
MspI CCGG 3 cut(s) 112, 169, 243
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 8 cut(s) 106, 112, 115, 156, 186, 189, 248, 746
NaeI GCCGGC 1 cut(s) 244
NarI GGCGCC 2 cut(s) 45, 342
NdeII GATC 5 cut(s) 480, 528, 578, 583, 820
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 2 cut(s) 937, 960
NlaIV GGNNCC 4 cut(s) 46, 58, 343, 606
NmuCI GTSAC 7 cut(s) 292, 358, 545, 640, 812, 856, 929
OliI CACNNNNGTG 1 cut(s) 632
PciSI GCTCTTC 1 cut(s) 656
PcsI WCGNNNNNNNCGW 2 cut(s) 485, 524
PdiI GCCGGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 509
PflFI GACNNNGTC 1 cut(s) 11
PleI GAGTC 5 cut(s) 20, 180, 416, 568, 746
PluTI GGCGCC 2 cut(s) 48, 345
PpsI GAGTC 5 cut(s) 20, 180, 416, 568, 746
Ppu21I YACGTR 1 cut(s) 690
PshBI ATTAAT 1 cut(s) 978
PspN4I GGNNCC 4 cut(s) 46, 58, 343, 606
PspPI GGNCC 2 cut(s) 250, 875
PsuI RGATCY 1 cut(s) 578
PsyI GACNNNGTC 1 cut(s) 11
RsaI GTAC 4 cut(s) 122, 140, 898, 961
RsaNI GTAC 4 cut(s) 121, 139, 897, 960
RseI CAYNNNNRTG 1 cut(s) 632
SapI GCTCTTC 1 cut(s) 656
SaqAI TTAA 2 cut(s) 884, 978
Sau3AI GATC 5 cut(s) 480, 528, 578, 583, 820
Sau96I GGNCC 2 cut(s) 250, 875
SchI GAGTC 5 cut(s) 21, 181, 416, 569, 746
SfoI GGCGCC 2 cut(s) 46, 343
SinI GGWCC 1 cut(s) 875
SmiMI CAYNNNNRTG 1 cut(s) 632
Sse9I AATT 4 cut(s) 656, 797, 937, 975
SspDI GGCGCC 2 cut(s) 44, 341
SspMI CTAG 1 cut(s) 900
StyI CCWWGG 2 cut(s) 27, 630
TaaI ACNGT 4 cut(s) 269, 292, 646, 818
TaiI ACGT 4 cut(s) 261, 462, 518, 692
TaqI TCGA 5 cut(s) 50, 200, 479, 527, 552
TaqII GACCGA 1 cut(s) 553
TasI AATT 4 cut(s) 656, 797, 937, 975
TatI WGTACW 1 cut(s) 959
TauI GCSGC 4 cut(s) 80, 109, 162, 449
Tru1I TTAA 2 cut(s) 884, 978
Tru9I TTAA 2 cut(s) 884, 978
TscAI CASTG 1 cut(s) 821
TseFI GTSAC 7 cut(s) 292, 358, 545, 640, 812, 856, 929
TseI GCWGC 8 cut(s) 115, 133, 162, 180, 183, 186, 189, 710
Tsp45I GTSAC 7 cut(s) 292, 358, 545, 640, 812, 856, 929
TspDTI ATGAA 3 cut(s) 626, 945, 950
TspGWI ACGGA 3 cut(s) 20, 512, 720
TspRI CASTG 1 cut(s) 821
Tth111I GACNNNGTC 1 cut(s) 11
VpaK11BI GGWCC 1 cut(s) 875
VspI ATTAAT 1 cut(s) 978
XapI RAATTY 1 cut(s) 937
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 1 cut(s) 900
ZraI GACGTC 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.