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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G13390 AT5G13390 |
| fragaria_vesca | FvH4_4g22440 |
| malus_domestica | MD13G1132200.v1.1 MD16G1142500.v1.1 |
| prunus_persica | Prupe.1G213300_v2.0.a1 |
| pyrus_communis | pycom13g11500 pycom16g11290 |
| rosa_chinensis | RchiOBHm_Chr4g0402251 RchiOBHm_Chr4g0428701 |
| rosa_laevigata | RLG00000007134 |
| rosa_multiflora | Rmu_sc0003316.1_g000007 |
| rosa_roxburghii | Rroxscaffold_5G00370370 |
| rosa_rugosa | Rorug04G0227300 |
| rosa_samantha | Rh4AG284500 Rh4BG290500 Rh4CG306700 Rh4DG288100 Rh5DG506600 |
| rosa_wichuraiana | Rw0G020630 Rw4G015480 Rw4G024710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2182 |
| AatII | GACGTC | 1 cut(s) | 1610 |
| AccBSI | CCGCTC | 2 cut(s) | 1026, 2123 |
| AccI | GTMKAC | 1 cut(s) | 1978 |
| AccII | CGCG | 3 cut(s) | 25, 428, 3218 |
| AclWI | GGATC | 6 cut(s) | 144, 206, 715, 1429, 1685, 2773 |
| AcoI | YGGCCR | 3 cut(s) | 1410, 2180, 2577 |
| AcsI | RAATTY | 5 cut(s) | 317, 775, 1463, 2651, 2681 |
| AcuI | CTGAAG | 3 cut(s) | 479, 828, 1500 |
| AcvI | CACGTG | 1 cut(s) | 805 |
| AcyI | GRCGYC | 2 cut(s) | 809, 1607 |
| AfaI | GTAC | 3 cut(s) | 707, 1583, 3185 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1832, 1931, 2535, 2837 |
| AflIII | ACRYGT | 2 cut(s) | 3216, 3270 |
| AjiI | CACGTC | 2 cut(s) | 2091, 3271 |
| AjnI | CCWGG | 5 cut(s) | 2435, 2528, 2925, 3135, 3160 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3054, 3070, 3086, 3102 |
| AleI | CACNNNNGTG | 1 cut(s) | 2371 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1200, 1232 |
| Alw21I | GWGCWC | 3 cut(s) | 1144, 1151, 2661 |
| Alw26I | GTCTC | 3 cut(s) | 539, 1867, 2615 |
| AlwI | GGATC | 6 cut(s) | 144, 206, 715, 1429, 1685, 2773 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1244 |
| Ama87I | CYCGRG | 2 cut(s) | 1135, 1438 |
| AoxI | GGCC | 8 cut(s) | 35, 277, 1410, 1971, 2118, 2180, 2577, 3106 |
| ApoI | RAATTY | 5 cut(s) | 317, 775, 1463, 2651, 2681 |
| AspLEI | GCGC | 3 cut(s) | 224, 443, 2723 |
| AspS9I | GGNCC | 2 cut(s) | 36, 1525 |
| AsuC2I | CCSGG | 5 cut(s) | 1439, 1440, 1880, 2974, 3002 |
| AsuHPI | GGTGA | 8 cut(s) | 81, 1087, 1444, 1504, 1642, 2389, 2993, 3139 |
| AvaI | CYCGRG | 2 cut(s) | 1135, 1438 |
| AvaII | GGWCC | 1 cut(s) | 1525 |
| BaeGI | GKGCMC | 1 cut(s) | 1287 |
| BalI | TGGCCA | 2 cut(s) | 1412, 2579 |
| BanII | GRGCYC | 3 cut(s) | 104, 1151, 2661 |
| BauI | CACGAG | 1 cut(s) | 2453 |
| BbrPI | CACGTG | 1 cut(s) | 805 |
| BbsI | GAAGAC | 4 cut(s) | 637, 1575, 1642, 1924 |
| Bbv12I | GWGCWC | 3 cut(s) | 1144, 1151, 2661 |
| BbvCI | CCTCAGC | 1 cut(s) | 3359 |
| BccI | CCATC | 5 cut(s) | 181, 1925, 2156, 2416, 2861 |
| BceAI | ACGGC | 5 cut(s) | 581, 1832, 2167, 3093, 3239 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 938, 972, 2611, 2645, 3021, 3055 |
| BciT130I | CCWGG | 5 cut(s) | 2437, 2530, 2927, 3137, 3162 |
| BclI | TGATCA | 1 cut(s) | 2112 |
| BcnI | CCSGG | 5 cut(s) | 1439, 1440, 1880, 2974, 3002 |
| BcoDI | GTCTC | 3 cut(s) | 539, 1867, 2615 |
| BfaI | CTAG | 4 cut(s) | 669, 1587, 2606, 3336 |
| BfmI | CTRYAG | 5 cut(s) | 17, 947, 1236, 1749, 1901 |
| BglII | AGATCT | 1 cut(s) | 363 |
| BlpI | GCTNAGC | 1 cut(s) | 1150 |
| Bme18I | GGWCC | 1 cut(s) | 1525 |
| BmeT110I | CYCGRG | 2 cut(s) | 1135, 1438 |
| BmgBI | CACGTC | 2 cut(s) | 2091, 3271 |
| BmgT120I | GGNCC | 2 cut(s) | 36, 1525 |
| BmiI | GGNNCC | 3 cut(s) | 38, 1948, 2931 |
| BmrI | ACTGGG | 1 cut(s) | 1360 |
| BmuI | ACTGGG | 1 cut(s) | 1360 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1924 |
| BpiI | GAAGAC | 4 cut(s) | 637, 1575, 1642, 1924 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 315, 347, 2669, 2701 |
| BpmI | CTGGAG | 3 cut(s) | 521, 773, 1212 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3359 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1150 |
| BpuEI | CTTGAG | 3 cut(s) | 1528, 2401, 2890 |
| BpuMI | CCSGG | 5 cut(s) | 1439, 1440, 1880, 2974, 3002 |
| Bsa29I | ATCGAT | 1 cut(s) | 126 |
| BsaAI | YACGTR | 2 cut(s) | 805, 2254 |
| BsaBI | GATNNNNATC | 1 cut(s) | 939 |
| BsaHI | GRCGYC | 2 cut(s) | 809, 1607 |
| BsaI | GGTCTC | 1 cut(s) | 2615 |
| BsaWI | WCCGGW | 2 cut(s) | 10, 253 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1185, 1215 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1832, 1931, 2535, 2837 |
| Bse118I | RCCGGY | 1 cut(s) | 1373 |
| Bse1I | ACTGG | 8 cut(s) | 57, 656, 1214, 1355, 1767, 2053, 2128, 2373 |
| Bse3DI | GCAATG | 2 cut(s) | 1085, 2280 |
| Bse8I | GATNNNNATC | 1 cut(s) | 939 |
| BseBI | CCWGG | 5 cut(s) | 2437, 2530, 2927, 3137, 3162 |
| BseCI | ATCGAT | 1 cut(s) | 126 |
| BseGI | GGATG | 6 cut(s) | 348, 609, 2057, 2165, 2832, 2886 |
| BseJI | GATNNNNATC | 1 cut(s) | 939 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1832, 1931, 2535, 2837 |
| BseMI | GCAATG | 2 cut(s) | 1085, 2280 |
| BseNI | ACTGG | 8 cut(s) | 57, 656, 1214, 1355, 1767, 2053, 2128, 2373 |
| BseRI | GAGGAG | 7 cut(s) | 70, 224, 272, 729, 2198, 2564, 2707 |
| BseSI | GKGCMC | 1 cut(s) | 1287 |
| BseYI | CCCAGC | 1 cut(s) | 1244 |
| Bsh1236I | CGCG | 3 cut(s) | 25, 428, 3218 |
| Bsh1285I | CGRYCG | 1 cut(s) | 130 |
| BshFI | GGCC | 8 cut(s) | 37, 279, 1412, 1973, 2120, 2182, 2579, 3108 |
| BshVI | ATCGAT | 1 cut(s) | 126 |
| BsiEI | CGRYCG | 1 cut(s) | 130 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1144, 1151, 2661 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1135, 1438 |
| BsiSI | CCGG | 8 cut(s) | 11, 34, 254, 1374, 1439, 1879, 2973, 3002 |
| BslFI | GGGAC | 3 cut(s) | 200, 536, 2552 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1832, 1931, 2535, 2837 |
| BsmAI | GTCTC | 3 cut(s) | 539, 1867, 2615 |
| BsmBI | CGTCTC | 1 cut(s) | 539 |
| BsmFI | GGGAC | 3 cut(s) | 200, 536, 2552 |
| BsmI | GAATGC | 1 cut(s) | 954 |
| BsnI | GGCC | 8 cut(s) | 37, 279, 1412, 1973, 2120, 2182, 2579, 3108 |
| Bso31I | GGTCTC | 1 cut(s) | 2615 |
| BsoBI | CYCGRG | 2 cut(s) | 1135, 1438 |
| Bsp1286I | GDGCHC | 5 cut(s) | 104, 1144, 1151, 1287, 2661 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1150 |
| Bsp19I | CCATGG | 5 cut(s) | 709, 981, 1428, 1826, 2286 |
| BspANI | GGCC | 8 cut(s) | 37, 279, 1412, 1973, 2120, 2182, 2579, 3108 |
| BspDI | ATCGAT | 1 cut(s) | 126 |
| BspFNI | CGCG | 3 cut(s) | 25, 428, 3218 |
| BspLI | GGNNCC | 3 cut(s) | 38, 1948, 2931 |
| BspMAI | CTGCAG | 3 cut(s) | 951, 1240, 1753 |
| BspPI | GGATC | 6 cut(s) | 144, 206, 715, 1429, 1685, 2773 |
| BspQI | GCTCTTC | 2 cut(s) | 1721, 2454 |
| BspTNI | GGTCTC | 1 cut(s) | 2615 |
| BsrBI | CCGCTC | 2 cut(s) | 1026, 2123 |
| BsrDI | GCAATG | 2 cut(s) | 1085, 2280 |
| BsrFI | RCCGGY | 1 cut(s) | 1373 |
| BsrI | ACTGG | 8 cut(s) | 57, 656, 1214, 1355, 1767, 2053, 2128, 2373 |
| BssAI | RCCGGY | 1 cut(s) | 1373 |
| BssNAI | GTATAC | 1 cut(s) | 1979 |
| BssNI | GRCGYC | 2 cut(s) | 809, 1607 |
| BssSI | CACGAG | 1 cut(s) | 2453 |
| BssT1I | CCWWGG | 8 cut(s) | 709, 742, 930, 981, 1428, 1826, 2286, 2713 |
| Bst1107I | GTATAC | 1 cut(s) | 1979 |
| Bst2BI | CACGAG | 1 cut(s) | 2453 |
| Bst2UI | CCWGG | 5 cut(s) | 2437, 2530, 2927, 3137, 3162 |
| Bst4CI | ACNGT | 6 cut(s) | 1512, 1641, 1905, 3010, 3052, 3235 |
| Bst6I | CTCTTC | 6 cut(s) | 571, 619, 1721, 2454, 2607, 2805 |
| BstACI | GRCGYC | 2 cut(s) | 809, 1607 |
| BstBAI | YACGTR | 2 cut(s) | 805, 2254 |
| BstC8I | GCNNGC | 6 cut(s) | 354, 422, 426, 640, 1375, 2125 |
| BstDSI | CCRYGG | 6 cut(s) | 23, 709, 981, 1428, 1826, 2286 |
| BstEII | GGTNACC | 2 cut(s) | 925, 1492 |
| BstF5I | GGATG | 6 cut(s) | 348, 609, 2057, 2165, 2832, 2886 |
| BstFNI | CGCG | 3 cut(s) | 25, 428, 3218 |
| BstHHI | GCGC | 3 cut(s) | 224, 443, 2723 |
| BstMAI | GTCTC | 3 cut(s) | 539, 1867, 2615 |
| BstMCI | CGRYCG | 1 cut(s) | 130 |
| BstNI | CCWGG | 5 cut(s) | 2437, 2530, 2927, 3137, 3162 |
| BstNSI | RCATGY | 5 cut(s) | 549, 1381, 2009, 2059, 2351 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1924 |
| BstPI | GGTNACC | 2 cut(s) | 925, 1492 |
| BstSFI | CTRYAG | 5 cut(s) | 17, 947, 1236, 1749, 1901 |
| BstSLI | GKGCMC | 1 cut(s) | 1287 |
| BstSNI | TACGTA | 1 cut(s) | 2254 |
| BstUI | CGCG | 3 cut(s) | 25, 428, 3218 |
| BstV2I | GAAGAC | 4 cut(s) | 637, 1575, 1642, 1924 |
| BstX2I | RGATCY | 4 cut(s) | 149, 363, 720, 1677 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1658, 2287 |
| BstYI | RGATCY | 4 cut(s) | 149, 363, 720, 1677 |
| BstZ17I | GTATAC | 1 cut(s) | 1979 |
| Bsu15I | ATCGAT | 1 cut(s) | 126 |
| BsuRI | GGCC | 8 cut(s) | 37, 279, 1412, 1973, 2120, 2182, 2579, 3108 |
| BsuTUI | ATCGAT | 1 cut(s) | 126 |
| BtgI | CCRYGG | 6 cut(s) | 23, 709, 981, 1428, 1826, 2286 |
| BtrI | CACGTC | 2 cut(s) | 2091, 3271 |
| BtsCI | GGATG | 6 cut(s) | 348, 609, 2057, 2165, 2832, 2886 |
| BtsI | GCAGTG | 2 cut(s) | 347, 558 |
| BtsIMutI | CAGTG | 7 cut(s) | 64, 347, 558, 770, 1910, 2366, 3048 |
| Cac8I | GCNNGC | 6 cut(s) | 354, 422, 426, 640, 1375, 2125 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1244 |
| CfoI | GCGC | 3 cut(s) | 224, 443, 2723 |
| Cfr10I | RCCGGY | 1 cut(s) | 1373 |
| Cfr13I | GGNCC | 2 cut(s) | 36, 1525 |
| Cfr42I | CCGCGG | 1 cut(s) | 26 |
| Cfr9I | CCCGGG | 1 cut(s) | 1438 |
| ClaI | ATCGAT | 1 cut(s) | 126 |
| CseI | GACGC | 5 cut(s) | 521, 631, 798, 3207, 3224 |
| CsiI | ACCWGGT | 1 cut(s) | 3160 |
| Csp6I | GTAC | 3 cut(s) | 706, 1582, 3184 |
| CviQI | GTAC | 3 cut(s) | 706, 1582, 3184 |
| DraI | TTTAAA | 1 cut(s) | 1359 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2182 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2182 |
| EaeI | YGGCCR | 3 cut(s) | 1410, 2180, 2577 |
| Eam1104I | CTCTTC | 6 cut(s) | 571, 619, 1721, 2454, 2607, 2805 |
| EarI | CTCTTC | 6 cut(s) | 571, 619, 1721, 2454, 2607, 2805 |
| Ecl136II | GAGCTC | 2 cut(s) | 1149, 2659 |
| Eco105I | TACGTA | 1 cut(s) | 2254 |
| Eco130I | CCWWGG | 8 cut(s) | 709, 742, 930, 981, 1428, 1826, 2286, 2713 |
| Eco24I | GRGCYC | 3 cut(s) | 104, 1151, 2661 |
| Eco31I | GGTCTC | 1 cut(s) | 2615 |
| Eco32I | GATATC | 1 cut(s) | 3333 |
| Eco47I | GGWCC | 1 cut(s) | 1525 |
| Eco53kI | GAGCTC | 2 cut(s) | 1149, 2659 |
| Eco57I | CTGAAG | 3 cut(s) | 479, 828, 1500 |
| Eco72I | CACGTG | 1 cut(s) | 805 |
| Eco88I | CYCGRG | 2 cut(s) | 1135, 1438 |
| Eco91I | GGTNACC | 2 cut(s) | 925, 1492 |
| EcoICRI | GAGCTC | 2 cut(s) | 1149, 2659 |
| EcoO65I | GGTNACC | 2 cut(s) | 925, 1492 |
| EcoRII | CCWGG | 5 cut(s) | 2435, 2528, 2925, 3135, 3160 |
| EcoRV | GATATC | 1 cut(s) | 3333 |
| EcoT14I | CCWWGG | 8 cut(s) | 709, 742, 930, 981, 1428, 1826, 2286, 2713 |
| EcoT22I | ATGCAT | 2 cut(s) | 1344, 2057 |
| EcoT38I | GRGCYC | 3 cut(s) | 104, 1151, 2661 |
| ErhI | CCWWGG | 8 cut(s) | 709, 742, 930, 981, 1428, 1826, 2286, 2713 |
| Esp3I | CGTCTC | 1 cut(s) | 539 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2012, 2044 |
| FaqI | GGGAC | 3 cut(s) | 200, 536, 2552 |
| FauNDI | CATATG | 2 cut(s) | 1364, 2870 |
| FbaI | TGATCA | 1 cut(s) | 2112 |
| FblI | GTMKAC | 1 cut(s) | 1978 |
| FokI | GGATG | 6 cut(s) | 355, 616, 2064, 2152, 2839, 2873 |
| FriOI | GRGCYC | 3 cut(s) | 104, 1151, 2661 |
| FspBI | CTAG | 4 cut(s) | 669, 1587, 2606, 3336 |
| GlaI | GCGC | 3 cut(s) | 223, 442, 2722 |
| GsaI | CCCAGC | 1 cut(s) | 1248 |
| GsuI | CTGGAG | 3 cut(s) | 521, 773, 1212 |
| HaeIII | GGCC | 8 cut(s) | 37, 279, 1412, 1973, 2120, 2182, 2579, 3108 |
| HapII | CCGG | 8 cut(s) | 11, 34, 254, 1374, 1439, 1879, 2973, 3002 |
| HgaI | GACGC | 5 cut(s) | 521, 631, 798, 3207, 3224 |
| HhaI | GCGC | 3 cut(s) | 224, 443, 2723 |
| Hin1I | GRCGYC | 2 cut(s) | 809, 1607 |
| Hin6I | GCGC | 3 cut(s) | 222, 441, 2721 |
| HinP1I | GCGC | 3 cut(s) | 222, 441, 2721 |
| HindIII | AAGCTT | 4 cut(s) | 1315, 1400, 2026, 2785 |
| HinfI | GANTC | 8 cut(s) | 165, 302, 505, 935, 2157, 2215, 2957, 3093 |
| HpaII | CCGG | 8 cut(s) | 11, 34, 254, 1374, 1439, 1879, 2973, 3002 |
| HphI | GGTGA | 8 cut(s) | 81, 1087, 1444, 1504, 1642, 2389, 2993, 3139 |
| Hpy166II | GTNNAC | 4 cut(s) | 62, 1224, 1979, 3310 |
| Hpy8I | GTNNAC | 4 cut(s) | 62, 1224, 1979, 3310 |
| Hpy99I | CGWCG | 3 cut(s) | 302, 1612, 3223 |
| HpyCH4III | ACNGT | 6 cut(s) | 1512, 1641, 1905, 3010, 3052, 3235 |
| HpyCH4IV | ACGT | 6 cut(s) | 804, 1607, 2090, 2253, 3186, 3270 |
| HpySE526I | ACGT | 6 cut(s) | 804, 1607, 2090, 2253, 3186, 3270 |
| Hsp92I | GRCGYC | 2 cut(s) | 809, 1607 |
| HspAI | GCGC | 3 cut(s) | 222, 441, 2721 |
| KroI | GCCGGC | 1 cut(s) | 1373 |
| KroNI | GCCGGC | 1 cut(s) | 1375 |
| Ksp22I | TGATCA | 1 cut(s) | 2112 |
| KspI | CCGCGG | 1 cut(s) | 26 |
| LguI | GCTCTTC | 2 cut(s) | 1721, 2454 |
| LmnI | GCTCC | 7 cut(s) | 13, 483, 529, 867, 1193, 2816, 2935 |
| MabI | ACCWGGT | 1 cut(s) | 3160 |
| MaeI | CTAG | 4 cut(s) | 669, 1587, 2606, 3336 |
| MaeII | ACGT | 6 cut(s) | 804, 1607, 2090, 2253, 3186, 3270 |
| MbiI | CCGCTC | 2 cut(s) | 1026, 2123 |
| MfeI | CAATTG | 3 cut(s) | 204, 1734, 1983 |
| MflI | RGATCY | 4 cut(s) | 149, 363, 720, 1677 |
| MhlI | GDGCHC | 5 cut(s) | 104, 1144, 1151, 1287, 2661 |
| MlsI | TGGCCA | 2 cut(s) | 1412, 2579 |
| MluI | ACGCGT | 1 cut(s) | 3216 |
| MluNI | TGGCCA | 2 cut(s) | 1412, 2579 |
| MlyI | GAGTC | 2 cut(s) | 2951, 3102 |
| MmeI | TCCRAC | 1 cut(s) | 177 |
| Mox20I | TGGCCA | 2 cut(s) | 1412, 2579 |
| Mph1103I | ATGCAT | 2 cut(s) | 1344, 2057 |
| MroNI | GCCGGC | 1 cut(s) | 1373 |
| MscI | TGGCCA | 2 cut(s) | 1412, 2579 |
| MseI | TTAA | 7 cut(s) | 702, 1319, 1358, 1961, 2502, 2649, 2876 |
| MslI | CAYNNNNRTG | 5 cut(s) | 992, 2285, 2371, 2570, 2855 |
| Msp20I | TGGCCA | 2 cut(s) | 1412, 2579 |
| MspA1I | CMGCKG | 5 cut(s) | 25, 499, 751, 946, 2135 |
| MspI | CCGG | 8 cut(s) | 11, 34, 254, 1374, 1439, 1879, 2973, 3002 |
| MunI | CAATTG | 3 cut(s) | 204, 1734, 1983 |
| Mva1269I | GAATGC | 1 cut(s) | 954 |
| MvaI | CCWGG | 5 cut(s) | 2437, 2530, 2927, 3137, 3162 |
| MvnI | CGCG | 3 cut(s) | 25, 428, 3218 |
| NaeI | GCCGGC | 1 cut(s) | 1375 |
| NciI | CCSGG | 5 cut(s) | 1439, 1440, 1880, 2974, 3002 |
| NcoI | CCATGG | 5 cut(s) | 709, 981, 1428, 1826, 2286 |
| NdeI | CATATG | 2 cut(s) | 1364, 2870 |
| NgoMIV | GCCGGC | 1 cut(s) | 1373 |
| NlaIV | GGNNCC | 3 cut(s) | 38, 1948, 2931 |
| NmeAIII | GCCGAG | 3 cut(s) | 222, 396, 2792 |
| NmuCI | GTSAC | 8 cut(s) | 345, 810, 1075, 1492, 2202, 2470, 2563, 3164 |
| NsiI | ATGCAT | 2 cut(s) | 1344, 2057 |
| NspI | RCATGY | 5 cut(s) | 549, 1381, 2009, 2059, 2351 |
| OliI | CACNNNNGTG | 1 cut(s) | 2371 |
| PaeR7I | CTCGAG | 1 cut(s) | 1135 |
| PasI | CCCWGGG | 1 cut(s) | 2436 |
| PciSI | GCTCTTC | 2 cut(s) | 1721, 2454 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2514 |
| PctI | GAATGC | 1 cut(s) | 954 |
| PdiI | GCCGGC | 1 cut(s) | 1375 |
| PfeI | GAWTC | 6 cut(s) | 165, 302, 505, 935, 2157, 2215 |
| Ple19I | CGATCG | 1 cut(s) | 130 |
| PleI | GAGTC | 2 cut(s) | 2951, 3101 |
| PmaCI | CACGTG | 1 cut(s) | 805 |
| PmlI | CACGTG | 1 cut(s) | 805 |
| PpsI | GAGTC | 2 cut(s) | 2951, 3101 |
| Ppu21I | YACGTR | 2 cut(s) | 805, 2254 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1924 |
| Psp124BI | GAGCTC | 2 cut(s) | 1151, 2661 |
| Psp6I | CCWGG | 5 cut(s) | 2435, 2528, 2925, 3135, 3160 |
| PspCI | CACGTG | 1 cut(s) | 805 |
| PspEI | GGTNACC | 2 cut(s) | 925, 1492 |
| PspFI | CCCAGC | 1 cut(s) | 1244 |
| PspGI | CCWGG | 5 cut(s) | 2435, 2528, 2925, 3135, 3160 |
| PspN4I | GGNNCC | 3 cut(s) | 38, 1948, 2931 |
| PspPI | GGNCC | 2 cut(s) | 36, 1525 |
| PstI | CTGCAG | 3 cut(s) | 951, 1240, 1753 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1244 |
| PsuI | RGATCY | 4 cut(s) | 149, 363, 720, 1677 |
| PvuI | CGATCG | 1 cut(s) | 130 |
| PvuII | CAGCTG | 4 cut(s) | 499, 751, 946, 2135 |
| RsaI | GTAC | 3 cut(s) | 707, 1583, 3185 |
| RsaNI | GTAC | 3 cut(s) | 706, 1582, 3184 |
| RseI | CAYNNNNRTG | 5 cut(s) | 992, 2285, 2371, 2570, 2855 |
| SacI | GAGCTC | 2 cut(s) | 1151, 2661 |
| SacII | CCGCGG | 1 cut(s) | 26 |
| SapI | GCTCTTC | 2 cut(s) | 1721, 2454 |
| SaqAI | TTAA | 7 cut(s) | 702, 1319, 1358, 1961, 2502, 2649, 2876 |
| Sau96I | GGNCC | 2 cut(s) | 36, 1525 |
| SchI | GAGTC | 2 cut(s) | 2951, 3102 |
| SduI | GDGCHC | 5 cut(s) | 104, 1144, 1151, 1287, 2661 |
| SexAI | ACCWGGT | 1 cut(s) | 3160 |
| SfcI | CTRYAG | 5 cut(s) | 17, 947, 1236, 1749, 1901 |
| Sfr274I | CTCGAG | 1 cut(s) | 1135 |
| Sfr303I | CCGCGG | 1 cut(s) | 26 |
| SgrBI | CCGCGG | 1 cut(s) | 26 |
| SinI | GGWCC | 1 cut(s) | 1525 |
| SlaI | CTCGAG | 1 cut(s) | 1135 |
| SmaI | CCCGGG | 1 cut(s) | 1440 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 992, 2285, 2371, 2570, 2855 |
| SmlI | CTYRAG | 4 cut(s) | 1135, 1543, 2416, 2905 |
| SmoI | CTYRAG | 4 cut(s) | 1135, 1543, 2416, 2905 |
| SnaBI | TACGTA | 1 cut(s) | 2254 |
| SspI | AATATT | 1 cut(s) | 1890 |
| SspMI | CTAG | 4 cut(s) | 669, 1587, 2606, 3336 |
| SstI | GAGCTC | 2 cut(s) | 1151, 2661 |
| StyI | CCWWGG | 8 cut(s) | 709, 742, 930, 981, 1428, 1826, 2286, 2713 |
| TaaI | ACNGT | 6 cut(s) | 1512, 1641, 1905, 3010, 3052, 3235 |
| TaiI | ACGT | 6 cut(s) | 807, 1610, 2093, 2256, 3189, 3273 |
| TfiI | GAWTC | 6 cut(s) | 165, 302, 505, 935, 2157, 2215 |
| Tru1I | TTAA | 7 cut(s) | 702, 1319, 1358, 1961, 2502, 2649, 2876 |
| Tru9I | TTAA | 7 cut(s) | 702, 1319, 1358, 1961, 2502, 2649, 2876 |
| TscAI | CASTG | 7 cut(s) | 64, 354, 565, 777, 1910, 2373, 3055 |
| TseFI | GTSAC | 8 cut(s) | 345, 810, 1075, 1492, 2202, 2470, 2563, 3164 |
| Tsp45I | GTSAC | 8 cut(s) | 345, 810, 1075, 1492, 2202, 2470, 2563, 3164 |
| TspDTI | ATGAA | 5 cut(s) | 112, 620, 1835, 2149, 3365 |
| TspGWI | ACGGA | 3 cut(s) | 211, 397, 1914 |
| TspMI | CCCGGG | 1 cut(s) | 1438 |
| TspRI | CASTG | 7 cut(s) | 64, 354, 565, 777, 1910, 2373, 3055 |
| VpaK11BI | GGWCC | 1 cut(s) | 1525 |
| XapI | RAATTY | 5 cut(s) | 317, 775, 1463, 2651, 2681 |
| XceI | RCATGY | 5 cut(s) | 549, 1381, 2009, 2059, 2351 |
| XhoI | CTCGAG | 1 cut(s) | 1135 |
| XmaI | CCCGGG | 1 cut(s) | 1438 |
| XmiI | GTMKAC | 1 cut(s) | 1978 |
| XspI | CTAG | 4 cut(s) | 669, 1587, 2606, 3336 |
| ZraI | GACGTC | 1 cut(s) | 1608 |
| Zsp2I | ATGCAT | 2 cut(s) | 1344, 2057 |