Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009466

Physical Location & Seq

Genomic Coordinates Reverse (-)

10022556 .. 10027781

Gene Structure 5226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1132200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3246 bp

ATGATGCCGCCGGAGCTTCAACCGCGGTTCTTCCGTCCGTACATCACCGCTTCGGCGAGCACTTCCTCCTTCGGCAACGGCTCCACAAACCCTAGCTCCAGCCCCAACGACTCAATCTTCAATAATGGTGGCGGTGCTTCTAGATCTCTCAAGAACTCACGATTCTCCCCCTCCTCCTTCGCCCACAACGCCCGAATCGCCGTCGCACTCGTCCCCTGCGCCGCATTCCTCCTCGACCTCGGCGGCACTCCGGTGATCGCAACCCTAACCTTAGGCCTCATGGTCTCCTACATCGTCGACGCCCTCAACTTGAAGTCCGGTGCCTTCGTCGGCGTCTGGCTCACCCTCGTCTTTTCCCAGATCGCCTTCTTCTTCAGCTCCTCCCTCCTCTCCACCTTCACCTCCTTCCCCCTCGCCGCCCTCGCCGCCTTCCTCTGCGCCGAGACCAATTTCCTCATCGGCGTCTGGGTTTCTCTCCAATTCAAGTGGATTCAAATCGAGAACCCCTCAATCGTTCTCGCGCTCGAGCGCCTCCTCTTCGCCTGTCTCCCGTTCGCCGGCTCCTCCCTCTTCACCTGGGCCACCATCTCCGCCGTAGGTATGACCAACGCTTCGTACTACCTCATGTCCTTCTCCTGCCTCTTCTATTACCTCTACTGCATTCCTCGCATTTCCTCTTTCAAAACCAAGCAGGACTCCAAGTACCACGGCGGGGAGGTCCCCGATGACAACCTCATCCTCACGCCATTGGAGGGATGCATCCACACTCTCTATCTCCTCTTCTTCCCTCTCCTCTTCCACATTGCCTCTCACTACAACGTCATTTTCGCTTCCCCAGCCGCAGTTTCCGATCTATTTCTCCTCTTCTTCATTCCATTTCTCTTCCAGCTCTATGCCTCAACCCGGGGCGCGCTTTGGTGGGTCACGAAGAATCCAAACCAATTGCGCGGCATCCAGGTGATGAATGGCGCTGTTGCATTGGTTGTTGTGGTGATATGTTTGGAGATTAGAGTCGTTTTCCATTCGTTTGGGCGGTACATTCAGGTGCCTCCGCCGTTGAATTACCTTTTGGTGACCACTGCAATGCTCGGAGGTGCATCTGGAGCGAGTGCTTATGCGTTGAGTATGATATCTGATGCCTTCAGCTCCGTGGCTTTCACTGCTTTGGCTGTTGTGGTTAGTGCTGCGGGAGCTATCGTTGTCGGGTTTCCTGTATTGTTCATTCCGCTGCCTTCAGTTGCTGGTTTCTATTTGGCTCGATTTTTCACAAAGAAGAGTGTTTCATCATACTTTGCTTTTGTTGTTCTTGGAAGCTTGATGATGACATGGTTTGTGATACAGAATTTCTGGGATCTAAATATTTGGATGGCAGGAATGTCCCTGAAATCCTTCTGCAAACTCGTAATTGTGAATGTTGTCTTGGCTATGTCTATTCCTGGTCTAGTTCTACTTCCTTCAAAGCTTCACTTTTTGATAGAGATTGGATTAATCGGCCATGCAATTCTCGTTTGCCACATTGAGAATCGATTTTTTAATTACTCTGGCATATACTATTATGGGTTTGAGGAAGATGTAATGTACCCAAGCTACATGGTTATTGTGACAACATTTGTGGGTTTAGCTGTGGTGAAAAGACTGTCTGTTGATCGTCGTATTGGTGGAAAGGCTGTTTGGATTTTGACGTGCTTGTATTCAGCTAAGCTGGCTATGTTGCTTATGTCATCAAAGTCTGTCGTATGGGTGTCAGCTATTCTATTATTGGCTGTAACACCACCATTGCTACTTTACAAGGATAAGTCAAGAACAGCCTCAAAGATGAAAGCTTGGCAAGGATATGCACATGCAGGTGTGGTTTCCTTATCAGTCTGGTTTTGCCGTGAAACAATCTTTGAAGCCCTCCAGTGGTGGAATGGAAGACCCCCATCTGATGGCTTACTCTTGGGTTTCTGTATTGTTTTGATGGGCTTGGCTTGTGTACCCATTGTGGCTCTCCACTTCTCTCATGTCTTGTCTGCCAAGAGATGCCTAGTGCTGGTGGTGGCAACTGGATTGTTGTTTATCCTTATGCAACCACCTATTCCAGTATCATGGACATACCGGTCTGACCTAATTAAAGCTGCTCGGCAGACTGCTGATGACATCACCATATATGGCTTTGTGGCGCAAAAACCTTTGTGGCCATCATGGCTTCTTCTTATGGCAATCCTACTGACTCTAACAGCTTTCTTACATATCCTTATTGTTGTAACCATGGTCTCTGCCTCGGTGTTTGTGGTTTTCACCCATTTTCCATCTGCCTCGAGTACGAAGCTGCTTCCTTGGGTATTTGCTTTACTCGTAGCTCTCTTTCCTGTGACATATCTTTTGGAGGGCCAGGTGAGGGTTAAAAACATCCTTGGAGATAGCGAATTTGGAGATTTGGGTGAAGAAGAGAAGAAGCTCACAACTCTATTTGCTGTTGAGGGGGCAAGGACATCTCTTCTCGGTCTTTATGCAGCAATATTTATGCTAATAGCTCTGGAGATAAAGTTTGAAATTGCGTCATTGATGAGGGAAAAGGCTACTGAAAGGCCTGGAATCAGGCATAGTCAATCTGGTCAAAGCACCTCTACTAGCTTTGCTTCGAGAATGAGATTTATGCAACAGCGCCGAGCTGCAAGTGTCTCATCATTCACAATTACGAAAATGGCTGCTGAGGGAGCCTGGATGCCAGCAGTCGGTAACGTTGCCACTGTGATGTGCTTTGCTATATGCCTCATCTTGAATGTCAATCTCACAGGCGGCTCAAATGGTGCGATATTCTTCCTGGCACCAATTTTGCTACTGCTCAACCAGGACTCTGATTTTATTGCCGGATTTGGTGACAAGCAAAGGTATTTCCCTGTCACAGTAGTGATATCGGCCTACCTAGTCCTGACTGGCCTCTACAGCATATGGGAAGATGTCTGGCATGGGAATGCAGGTTGGGGTTTGGAAATTGGCGGTCCAGATTGGTTCTTTGTGGTGAAGAATTTGGCTCTCCTTGTTCTTACATTCCCGAGCCATATCCTTTTCAACAGGTTTATGTGGAGTTTCACAAAACAGGCGGACTCAATGCCATTGATAACTATGCCCCTTAATCTGCCATCGATCATAATAACAGACGTGCTGAAGATTAGGATATTAGGGCTCTTAGGAATCATTTATTCCCTGGCCCAGTACCTATTATCTAGACAACAGTACATCTCAGGGTTGAGGTATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1082

Amino Acids

119.13

Weight (kDa)

9.15

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13390 AT5G13390
fragaria_vesca	FvH4_4g22440
malus_domestica	MD13G1132200.v1.1 MD16G1142500.v1.1
prunus_persica	Prupe.1G213300_v2.0.a1
pyrus_communis	pycom13g11500 pycom16g11290
rosa_chinensis	RchiOBHm_Chr4g0402251 RchiOBHm_Chr4g0428701
rosa_laevigata	RLG00000007134
rosa_multiflora	Rmu_sc0003316.1_g000007
rosa_roxburghii	Rroxscaffold_5G00370370
rosa_rugosa	Rorug04G0227300
rosa_samantha	Rh4AG284500 Rh4BG290500 Rh4CG306700 Rh4DG288100 Rh5DG506600
rosa_wichuraiana	Rw0G020630 Rw4G015480 Rw4G024710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1835
AasI	GACNNNNNNGTC	1 cut(s)	2098
Acc36I	ACCTGC	2 cut(s)	1835, 2951
AccB1I	GGYRCC	3 cut(s)	320, 1045, 2809
AccB7I	CCANNNNNTGG	1 cut(s)	1928
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	4 cut(s)	25, 521, 911, 948
AclI	AACGTT	1 cut(s)	2724
AclWI	GGATC	1 cut(s)	1359
AcoI	YGGCCR	2 cut(s)	1492, 2177
AcsI	RAATTY	3 cut(s)	1342, 2408, 3010
AcuI	CTGAAG	4 cut(s)	358, 1126, 1218, 3170
AcyI	GRCGYC	3 cut(s)	300, 333, 462
AfaI	GTAC	9 cut(s)	41, 617, 704, 1037, 1580, 1977, 2305, 3200, 3221
AfiI	CCNNNNNNNGG	9 cut(s)	557, 712, 752, 903, 1902, 1928, 2032, 2380, 2717
AgeI	ACCGGT	1 cut(s)	2097
AjiI	CACGTC	2 cut(s)	1683, 3145
AjnI	CCWGG	9 cut(s)	575, 954, 1435, 2373, 2572, 2702, 2805, 2832, 3189
AjuI	GAANNNNNNNTTGG	6 cut(s)	1052, 1084, 1403, 1435, 1654, 1686
AleI	CACNNNNGTG	2 cut(s)	251, 2891
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	5 cut(s)	289, 437, 551, 2260, 2668
AlwI	GGATC	1 cut(s)	1359
AlwNI	CAGNNNCTG	1 cut(s)	1241
Ama87I	CYCGRG	4 cut(s)	524, 903, 2299, 3037
AoxI	GGCC	9 cut(s)	274, 579, 1492, 2177, 2371, 2570, 2901, 2920, 3192
ApeKI	GCWGC	7 cut(s)	1184, 1228, 2117, 2311, 2495, 2654, 2690
ApoI	RAATTY	3 cut(s)	1342, 2408, 3010
ArsI	GACNNNNNNTTYG	4 cut(s)	595, 627, 2347, 2379
AseI	ATTAAT	1 cut(s)	1487
AsiGI	ACCGGT	1 cut(s)	2097
Asp700I	GAANNNNTTC	1 cut(s)	1388
AspS9I	GGNCC	5 cut(s)	579, 718, 2371, 2984, 3193
AsuC2I	CCSGG	2 cut(s)	904, 905
AvaI	CYCGRG	4 cut(s)	524, 903, 2299, 3037
AvaII	GGWCC	2 cut(s)	718, 2984
AxyI	CCTNAGG	1 cut(s)	271
BalI	TGGCCA	1 cut(s)	2179
BanI	GGYRCC	3 cut(s)	320, 1045, 2809
BanII	GRGCYC	1 cut(s)	3171
BbsI	GAAGAC	1 cut(s)	1921
Bbv12I	GWGCWC	1 cut(s)	62
BbvCI	CCTCAGC	1 cut(s)	2694
BbvI	GCAGC	7 cut(s)	1171, 1215, 2104, 2298, 2507, 2641, 2677
BccI	CCATC	8 cut(s)	593, 1360, 1922, 1930, 1954, 2188, 2299, 3133
BceAI	ACGGC	6 cut(s)	94, 185, 578, 724, 1039, 1860
BciT130I	CCWGG	9 cut(s)	577, 956, 1437, 2375, 2574, 2704, 2807, 2834, 3191
BcnI	CCSGG	2 cut(s)	904, 905
BcoDI	GTCTC	5 cut(s)	289, 437, 551, 2260, 2668
BfaI	CTAG	7 cut(s)	93, 141, 1442, 2027, 2613, 2909, 3210
BfmI	CTRYAG	1 cut(s)	2926
BfoI	RGCGCY	3 cut(s)	532, 972, 2650
BfuAI	ACCTGC	2 cut(s)	1835, 2951
BglI	GCCNNNNNGGC	1 cut(s)	2185
BglII	AGATCT	1 cut(s)	143
BlpI	GCTNAGC	1 cut(s)	1698
Bme18I	GGWCC	2 cut(s)	718, 2984
BmeT110I	CYCGRG	4 cut(s)	524, 903, 2299, 3037
BmgBI	CACGTC	2 cut(s)	1683, 3145
BmgT120I	GGNCC	5 cut(s)	579, 718, 2371, 2984, 3193
BmiI	GGNNCC	7 cut(s)	82, 322, 562, 720, 1047, 2701, 2811
BmrI	ACTGGG	1 cut(s)	3190
BmsI	GCATC	7 cut(s)	746, 768, 960, 1106, 1126, 2012, 2697
BmuI	ACTGGG	1 cut(s)	3190
BpiI	GAAGAC	1 cut(s)	1921
BplI	GAGNNNNNCTC	2 cut(s)	491, 523
BpmI	CTGGAG	4 cut(s)	82, 1122, 1883, 2540
Bpu10I	CCTNAGC	1 cut(s)	2694
Bpu1102I	GCTNAGC	1 cut(s)	1698
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	2 cut(s)	904, 905
Bsa29I	ATCGAT	2 cut(s)	1525, 3128
BsaBI	GATNNNNATC	1 cut(s)	494
BsaHI	GRCGYC	3 cut(s)	300, 333, 462
BsaI	GGTCTC	3 cut(s)	289, 437, 2260
BsaWI	WCCGGW	3 cut(s)	250, 317, 2097
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 1182, 1212, 2513, 2543
Bsc4I	CCNNNNNNNGG	9 cut(s)	557, 712, 752, 903, 1902, 1928, 2032, 2380, 2717
Bse118I	RCCGGY	2 cut(s)	557, 2097
Bse1I	ACTGG	5 cut(s)	1900, 2050, 2081, 2923, 3196
Bse21I	CCTNAGG	1 cut(s)	271
Bse3DI	GCAATG	3 cut(s)	801, 1089, 1775
Bse8I	GATNNNNATC	1 cut(s)	494
BseBI	CCWGG	9 cut(s)	577, 956, 1437, 2375, 2574, 2704, 2807, 2834, 3191
BseCI	ATCGAT	2 cut(s)	1525, 3128
BseGI	GGATG	7 cut(s)	735, 759, 761, 951, 1371, 2391, 2712
BseJI	GATNNNNATC	1 cut(s)	494
BseLI	CCNNNNNNNGG	9 cut(s)	557, 712, 752, 903, 1902, 1928, 2032, 2380, 2717
BseMI	GCAATG	3 cut(s)	801, 1089, 1775
BseMII	CTCAG	2 cut(s)	2685, 3240
BseNI	ACTGG	5 cut(s)	1900, 2050, 2081, 2923, 3196
BsePI	GCGCGC	1 cut(s)	909
BseRI	GAGGAG	9 cut(s)	163, 221, 370, 377, 524, 553, 767, 782, 851
BseXI	GCAGC	7 cut(s)	1171, 1215, 2104, 2298, 2507, 2641, 2677
BseYI	CCCAGC	1 cut(s)	835
Bsh1236I	CGCG	4 cut(s)	25, 521, 911, 948
BshFI	GGCC	9 cut(s)	276, 581, 1494, 2179, 2373, 2572, 2903, 2922, 3194
BshNI	GGYRCC	3 cut(s)	320, 1045, 2809
BshTI	ACCGGT	1 cut(s)	2097
BshVI	ATCGAT	2 cut(s)	1525, 3128
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	4 cut(s)	524, 903, 2299, 3037
BsiSI	CCGG	7 cut(s)	11, 251, 318, 558, 904, 2098, 2853
BslFI	GGGAC	3 cut(s)	197, 704, 1363
BslI	CCNNNNNNNGG	9 cut(s)	557, 712, 752, 903, 1902, 1928, 2032, 2380, 2717
BsmAI	GTCTC	5 cut(s)	289, 437, 551, 2260, 2668
BsmFI	GGGAC	3 cut(s)	197, 704, 1363
BsmI	GAATGC	3 cut(s)	224, 660, 2962
BsnI	GGCC	9 cut(s)	276, 581, 1494, 2179, 2373, 2572, 2903, 2922, 3194
Bso31I	GGTCTC	3 cut(s)	289, 437, 2260
BsoBI	CYCGRG	4 cut(s)	524, 903, 2299, 3037
Bsp1286I	GDGCHC	2 cut(s)	62, 3171
Bsp143I	GATC	7 cut(s)	143, 255, 360, 850, 1351, 1645, 3129
Bsp1720I	GCTNAGC	1 cut(s)	1698
Bsp19I	CCATGG	1 cut(s)	2250
BspANI	GGCC	9 cut(s)	276, 581, 1494, 2179, 2373, 2572, 2903, 2922, 3194
BspCNI	CTCAG	2 cut(s)	2686, 3239
BspDI	ATCGAT	2 cut(s)	1525, 3128
BspFNI	CGCG	4 cut(s)	25, 521, 911, 948
BspLI	GGNNCC	7 cut(s)	82, 322, 562, 720, 1047, 2701, 2811
BspMI	ACCTGC	2 cut(s)	1835, 2951
BspPI	GGATC	1 cut(s)	1359
BspT107I	GGYRCC	3 cut(s)	320, 1045, 2809
BspTNI	GGTCTC	3 cut(s)	289, 437, 2260
BsrDI	GCAATG	3 cut(s)	801, 1089, 1775
BsrFI	RCCGGY	2 cut(s)	557, 2097
BsrI	ACTGG	5 cut(s)	1900, 2050, 2081, 2923, 3196
BssAI	RCCGGY	2 cut(s)	557, 2097
BssHII	GCGCGC	1 cut(s)	909
BssMI	GATC	7 cut(s)	143, 255, 360, 850, 1351, 1645, 3129
BssNI	GRCGYC	3 cut(s)	300, 333, 462
BssT1I	CCWWGG	3 cut(s)	2250, 2318, 2395
Bst2UI	CCWGG	9 cut(s)	577, 956, 1437, 2375, 2574, 2704, 2807, 2834, 3191
Bst4CI	ACNGT	4 cut(s)	1638, 2734, 2890, 3219
BstACI	GRCGYC	3 cut(s)	300, 333, 462
BstC8I	GCNNGC	5 cut(s)	58, 559, 911, 1704, 2712
BstDEI	CTNAG	5 cut(s)	271, 1698, 2694, 3172, 3226
BstDSI	CCRYGG	4 cut(s)	23, 706, 1149, 2250
BstEII	GGTNACC	1 cut(s)	1072
BstF5I	GGATG	7 cut(s)	735, 759, 761, 951, 1371, 2391, 2712
BstFNI	CGCG	4 cut(s)	25, 521, 911, 948
BstH2I	RGCGCY	3 cut(s)	532, 972, 2650
BstKTI	GATC	7 cut(s)	146, 258, 363, 853, 1354, 1648, 3132
BstMAI	GTCTC	5 cut(s)	289, 437, 551, 2260, 2668
BstMBI	GATC	7 cut(s)	143, 255, 360, 850, 1351, 1645, 3129
BstNI	CCWGG	9 cut(s)	577, 956, 1437, 2375, 2574, 2704, 2807, 2834, 3191
BstNSI	RCATGY	1 cut(s)	1844
BstPI	GGTNACC	1 cut(s)	1072
BstSFI	CTRYAG	1 cut(s)	2926
BstUI	CGCG	4 cut(s)	25, 521, 911, 948
BstV1I	GCAGC	7 cut(s)	1171, 1215, 2104, 2298, 2507, 2641, 2677
BstV2I	GAAGAC	1 cut(s)	1921
BstX2I	RGATCY	2 cut(s)	143, 1351
BstXI	CCANNNNNNTGG	2 cut(s)	1028, 2088
BstYI	RGATCY	2 cut(s)	143, 1351
Bsu15I	ATCGAT	2 cut(s)	1525, 3128
Bsu36I	CCTNAGG	1 cut(s)	271
BsuRI	GGCC	9 cut(s)	276, 581, 1494, 2179, 2373, 2572, 2903, 2922, 3194
BsuTUI	ATCGAT	2 cut(s)	1525, 3128
BtgI	CCRYGG	4 cut(s)	23, 706, 1149, 2250
BtrI	CACGTC	2 cut(s)	1683, 3145
BtsCI	GGATG	7 cut(s)	735, 759, 761, 951, 1371, 2391, 2712
BtsI	GCAGTG	2 cut(s)	1077, 1158
BtsIMutI	CAGTG	4 cut(s)	1077, 1158, 1907, 2730
BveI	ACCTGC	2 cut(s)	1835, 2951
Cac8I	GCNNGC	5 cut(s)	58, 559, 911, 1704, 2712
CaiI	CAGNNNCTG	1 cut(s)	1241
Cfr10I	RCCGGY	2 cut(s)	557, 2097
Cfr13I	GGNCC	5 cut(s)	579, 718, 2371, 2984, 3193
Cfr42I	CCGCGG	1 cut(s)	26
Cfr9I	CCCGGG	1 cut(s)	903
ClaI	ATCGAT	2 cut(s)	1525, 3128
CseI	GACGC	4 cut(s)	308, 322, 451, 2529
Csp6I	GTAC	9 cut(s)	40, 616, 703, 1036, 1579, 1976, 2304, 3199, 3220
CspAI	ACCGGT	1 cut(s)	2097
CspCI	CAANNNNNGTGG	6 cut(s)	109, 144, 467, 502, 1593, 1628
CviQI	GTAC	9 cut(s)	40, 616, 703, 1036, 1579, 1976, 2304, 3199, 3220
DdeI	CTNAG	5 cut(s)	271, 1698, 2694, 3172, 3226
DpnI	GATC	7 cut(s)	145, 257, 362, 852, 1353, 1647, 3131
DpnII	GATC	7 cut(s)	143, 255, 360, 850, 1351, 1645, 3129
DrdI	GACNNNNNNGTC	1 cut(s)	2098
DseDI	GACNNNNNNGTC	1 cut(s)	2098
EaeI	YGGCCR	2 cut(s)	1492, 2177
EciI	GGCGGA	3 cut(s)	580, 1041, 3101
Eco130I	CCWWGG	3 cut(s)	2250, 2318, 2395
Eco147I	AGGCCT	2 cut(s)	276, 2572
Eco24I	GRGCYC	1 cut(s)	3171
Eco31I	GGTCTC	3 cut(s)	289, 437, 2260
Eco32I	GATATC	2 cut(s)	1131, 2898
Eco47I	GGWCC	2 cut(s)	718, 2984
Eco57I	CTGAAG	4 cut(s)	358, 1126, 1218, 3170
Eco81I	CCTNAGG	1 cut(s)	271
Eco88I	CYCGRG	4 cut(s)	524, 903, 2299, 3037
Eco91I	GGTNACC	1 cut(s)	1072
EcoO109I	RGGNCCY	1 cut(s)	718
EcoO65I	GGTNACC	1 cut(s)	1072
EcoRII	CCWGG	9 cut(s)	575, 954, 1435, 2373, 2572, 2702, 2805, 2832, 3189
EcoRV	GATATC	2 cut(s)	1131, 2898
EcoT14I	CCWWGG	3 cut(s)	2250, 2318, 2395
EcoT22I	ATGCAT	1 cut(s)	761
EcoT38I	GRGCYC	1 cut(s)	3171
ErhI	CCWWGG	3 cut(s)	2250, 2318, 2395
FalI	AAGNNNNNCTT	2 cut(s)	1451, 1483
FaqI	GGGAC	3 cut(s)	197, 704, 1363
FauI	CCCGC	2 cut(s)	704, 1180
FauNDI	CATATG	1 cut(s)	2933
FblI	GTMKAC	1 cut(s)	297
FokI	GGATG	7 cut(s)	722, 746, 768, 938, 1378, 2378, 2719
FriOI	GRGCYC	1 cut(s)	3171
FspBI	CTAG	7 cut(s)	93, 141, 1442, 2027, 2613, 2909, 3210
GsaI	CCCAGC	1 cut(s)	839
GsuI	CTGGAG	4 cut(s)	82, 1122, 1883, 2540
HaeII	RGCGCY	3 cut(s)	532, 972, 2650
HaeIII	GGCC	9 cut(s)	276, 581, 1494, 2179, 2373, 2572, 2903, 2922, 3194
HapII	CCGG	7 cut(s)	11, 251, 318, 558, 904, 2098, 2853
HgaI	GACGC	4 cut(s)	308, 322, 451, 2529
Hin1I	GRCGYC	3 cut(s)	300, 333, 462
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	3 cut(s)	1312, 1460, 1821
HpaII	CCGG	7 cut(s)	11, 251, 318, 558, 904, 2098, 2853
Hpy166II	GTNNAC	2 cut(s)	298, 1976
Hpy188I	TCNGA	6 cut(s)	850, 1091, 1135, 1927, 2104, 2842
Hpy8I	GTNNAC	2 cut(s)	298, 1976
Hpy99I	CGWCG	5 cut(s)	206, 299, 302, 332, 1653
HpyCH4III	ACNGT	4 cut(s)	1638, 2734, 2890, 3219
HpyCH4IV	ACGT	4 cut(s)	819, 1682, 2724, 3144
HpyF3I	CTNAG	5 cut(s)	271, 1698, 2694, 3172, 3226
HpySE526I	ACGT	4 cut(s)	819, 1682, 2724, 3144
Hsp92I	GRCGYC	3 cut(s)	300, 333, 462
KroI	GCCGGC	1 cut(s)	557
KroNI	GCCGGC	1 cut(s)	559
KspI	CCGCGG	1 cut(s)	26
Kzo9I	GATC	7 cut(s)	143, 255, 360, 850, 1351, 1645, 3129
LmnI	GCTCC	9 cut(s)	13, 86, 101, 383, 566, 1103, 1151, 1190, 2699
Lsp1109I	GCAGC	7 cut(s)	1171, 1215, 2104, 2298, 2507, 2641, 2677
LweI	GCATC	7 cut(s)	746, 768, 960, 1106, 1126, 2012, 2697
MaeI	CTAG	7 cut(s)	93, 141, 1442, 2027, 2613, 2909, 3210
MaeII	ACGT	4 cut(s)	819, 1682, 2724, 3144
MaeIII	GTNAC	9 cut(s)	922, 1072, 1600, 1765, 2245, 2353, 2720, 2861, 2884
MalI	GATC	7 cut(s)	145, 257, 362, 852, 1353, 1647, 3131
MboI	GATC	7 cut(s)	143, 255, 360, 850, 1351, 1645, 3129
MfeI	CAATTG	1 cut(s)	941
MflI	RGATCY	2 cut(s)	143, 1351
MhlI	GDGCHC	2 cut(s)	62, 3171
MlsI	TGGCCA	1 cut(s)	2179
MluNI	TGGCCA	1 cut(s)	2179
MlyI	GAGTC	6 cut(s)	104, 689, 1020, 2206, 2831, 3083
Mox20I	TGGCCA	1 cut(s)	2179
Mph1103I	ATGCAT	1 cut(s)	761
MroNI	GCCGGC	1 cut(s)	557
MroXI	GAANNNNTTC	1 cut(s)	1388
MscI	TGGCCA	1 cut(s)	2179
MseI	TTAA	5 cut(s)	1487, 1533, 2112, 2385, 3117
MslI	CAYNNNNRTG	8 cut(s)	251, 956, 1043, 1082, 1845, 2735, 2891, 2955
Msp20I	TGGCCA	1 cut(s)	2179
MspA1I	CMGCKG	2 cut(s)	25, 1228
MspI	CCGG	7 cut(s)	11, 251, 318, 558, 904, 2098, 2853
MunI	CAATTG	1 cut(s)	941
Mva1269I	GAATGC	3 cut(s)	224, 660, 2962
MvaI	CCWGG	9 cut(s)	577, 956, 1437, 2375, 2574, 2704, 2807, 2834, 3191
MvnI	CGCG	4 cut(s)	25, 521, 911, 948
NaeI	GCCGGC	1 cut(s)	559
NciI	CCSGG	2 cut(s)	904, 905
NcoI	CCATGG	1 cut(s)	2250
NdeI	CATATG	1 cut(s)	2933
NdeII	GATC	7 cut(s)	143, 255, 360, 850, 1351, 1645, 3129
NgoMIV	GCCGGC	1 cut(s)	557
NlaIV	GGNNCC	7 cut(s)	82, 322, 562, 720, 1047, 2701, 2811
NmeAIII	GCCGAG	4 cut(s)	219, 466, 2101, 2675
NmuCI	GTSAC	6 cut(s)	922, 1072, 1600, 2353, 2861, 2884
NsiI	ATGCAT	1 cut(s)	761
NspI	RCATGY	1 cut(s)	1844
OliI	CACNNNNGTG	2 cut(s)	251, 2891
PaeR7I	CTCGAG	2 cut(s)	524, 2299
PaqCI	CACCTGC	1 cut(s)	1835
PauI	GCGCGC	1 cut(s)	909
PceI	AGGCCT	2 cut(s)	276, 2572
PctI	GAATGC	3 cut(s)	224, 660, 2962
PdiI	GCCGGC	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	1388
PfeI	GAWTC	7 cut(s)	162, 195, 490, 931, 1522, 2577, 3177
PflMI	CCANNNNNTGG	1 cut(s)	1928
PinAI	ACCGGT	1 cut(s)	2097
PleI	GAGTC	6 cut(s)	104, 689, 1019, 2206, 2831, 3083
PpsI	GAGTC	6 cut(s)	104, 689, 1019, 2206, 2831, 3083
PpuMI	RGGWCCY	1 cut(s)	718
PshBI	ATTAAT	1 cut(s)	1487
Psp1406I	AACGTT	1 cut(s)	2724
Psp5II	RGGWCCY	1 cut(s)	718
Psp6I	CCWGG	9 cut(s)	575, 954, 1435, 2373, 2572, 2702, 2805, 2832, 3189
PspEI	GGTNACC	1 cut(s)	1072
PspFI	CCCAGC	1 cut(s)	835
PspGI	CCWGG	9 cut(s)	575, 954, 1435, 2373, 2572, 2702, 2805, 2832, 3189
PspN4I	GGNNCC	7 cut(s)	82, 322, 562, 720, 1047, 2701, 2811
PspPI	GGNCC	5 cut(s)	579, 718, 2371, 2984, 3193
PspPPI	RGGWCCY	1 cut(s)	718
PspXI	VCTCGAGB	2 cut(s)	524, 2299
PstNI	CAGNNNCTG	1 cut(s)	1241
PsuI	RGATCY	2 cut(s)	143, 1351
PteI	GCGCGC	1 cut(s)	909
RsaI	GTAC	9 cut(s)	41, 617, 704, 1037, 1580, 1977, 2305, 3200, 3221
RsaNI	GTAC	9 cut(s)	40, 616, 703, 1036, 1579, 1976, 2304, 3199, 3220
RseI	CAYNNNNRTG	8 cut(s)	251, 956, 1043, 1082, 1845, 2735, 2891, 2955
SacII	CCGCGG	1 cut(s)	26
SalI	GTCGAC	1 cut(s)	296
SaqAI	TTAA	5 cut(s)	1487, 1533, 2112, 2385, 3117
Sau3AI	GATC	7 cut(s)	143, 255, 360, 850, 1351, 1645, 3129
Sau96I	GGNCC	5 cut(s)	579, 718, 2371, 2984, 3193
SchI	GAGTC	6 cut(s)	104, 689, 1020, 2206, 2831, 3083
SduI	GDGCHC	2 cut(s)	62, 3171
SfaNI	GCATC	7 cut(s)	746, 768, 960, 1106, 1126, 2012, 2697
SfcI	CTRYAG	1 cut(s)	2926
Sfr274I	CTCGAG	2 cut(s)	524, 2299
Sfr303I	CCGCGG	1 cut(s)	26
SgrBI	CCGCGG	1 cut(s)	26
SgrDI	CGTCGACG	1 cut(s)	296
SinI	GGWCC	2 cut(s)	718, 2984
SlaI	CTCGAG	2 cut(s)	524, 2299
SmaI	CCCGGG	1 cut(s)	905
SmiMI	CAYNNNNRTG	8 cut(s)	251, 956, 1043, 1082, 1845, 2735, 2891, 2955
SmlI	CTYRAG	3 cut(s)	149, 524, 2299
SmoI	CTYRAG	3 cut(s)	149, 524, 2299
SseBI	AGGCCT	2 cut(s)	276, 2572
SspI	AATATT	2 cut(s)	1360, 2502
SspMI	CTAG	7 cut(s)	93, 141, 1442, 2027, 2613, 2909, 3210
StuI	AGGCCT	2 cut(s)	276, 2572
StyI	CCWWGG	3 cut(s)	2250, 2318, 2395
TaaI	ACNGT	4 cut(s)	1638, 2734, 2890, 3219
TaiI	ACGT	4 cut(s)	822, 1685, 2727, 3147
TaqI	TCGA	9 cut(s)	234, 297, 498, 525, 1258, 1525, 2300, 2624, 3128
TaqII	GACCGA	1 cut(s)	2474
TatI	WGTACW	1 cut(s)	3219
TauI	GCSGC	8 cut(s)	10, 224, 246, 419, 428, 842, 951, 2784
TfiI	GAWTC	7 cut(s)	162, 195, 490, 931, 1522, 2577, 3177
Tru1I	TTAA	5 cut(s)	1487, 1533, 2112, 2385, 3117
Tru9I	TTAA	5 cut(s)	1487, 1533, 2112, 2385, 3117
TscAI	CASTG	4 cut(s)	1084, 1165, 1907, 2737
TseFI	GTSAC	6 cut(s)	922, 1072, 1600, 2353, 2861, 2884
TseI	GCWGC	7 cut(s)	1184, 1228, 2117, 2311, 2495, 2654, 2690
Tsp45I	GTSAC	6 cut(s)	922, 1072, 1600, 2353, 2861, 2884
TspDTI	ATGAA	5 cut(s)	859, 977, 1210, 1272, 1832
TspGWI	ACGGA	3 cut(s)	23, 27, 1138
TspMI	CCCGGG	1 cut(s)	903
TspRI	CASTG	4 cut(s)	1084, 1165, 1907, 2737
Van91I	CCANNNNNTGG	1 cut(s)	1928
VpaK11BI	GGWCC	2 cut(s)	718, 2984
VspI	ATTAAT	1 cut(s)	1487
XapI	RAATTY	3 cut(s)	1342, 2408, 3010
XbaI	TCTAGA	2 cut(s)	140, 3209
XceI	RCATGY	1 cut(s)	1844
XcmI	CCANNNNNNNNNTGG	2 cut(s)	962, 1907
XhoI	CTCGAG	2 cut(s)	524, 2299
XmaI	CCCGGG	1 cut(s)	903
XmiI	GTMKAC	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	1388
XspI	CTAG	7 cut(s)	93, 141, 1442, 2027, 2613, 2909, 3210
Zsp2I	ATGCAT	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.