Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009466

Physical Location & Seq

Genomic Coordinates Reverse (-)

20771723 .. 20775502

Gene Structure 3780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37407

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGCCTTATTTCCAGGTCTCCACAAAGATGGCTTTGGAACCCTATTCATTTGGATCGTACGAAATCAACAACAGGGAAGTGTTTTATGACACTAATCTATCGTATGCCTTGGTTAATTTGCGCTCTGTCGTTTCTGGTATCCAAATAATGGCTGGTAGTTCCAATACTGAAGCACATACTGGGTGGACCATGTTGAACATTCTACATGTGTGTACATCTACCCTCTGGTGGGTCACTAAGAATCCGAACCAGCTACGAGGAATTCAAGTCATGAATGGCGTCGTTGCTTTGGTGGTTGTTGTAATATGTTTGGAGGTTAGAGCTGTTTTCCATTCATTTGGGGAATACATTCAGGTGCCTCCGCATTTGAATTACCTTTTGGTGACAACAACAATGCTTGGAGGTGCAGCTGGAGCTGGTGCCTATGCGCTGGGTATGATATCTGATGCCTTCAGCTGCCTGGCTTTCACTGCTTTGGCTATTGTAGTTAGTGCTGCTGGAGCTATCATTGTAGGATTTCCTGTTTTGTTCCTTCCACTGCCTTCAGTTGCTGGCTTCTATTTGGCTCGCTTTTTTACAAAGAAGAGTGTTCCATCCTACTTTGCTTTTGTTGTGCTTGGGAGCCTGATGGTTACATGGTTTGAAATGCACAATTTCTGGGATCTAAATATTTGGATGGCAGGCATGTCCCTGAAATCCTTCTGCAAACTTGTTATTTTGAATGTTGTCTTGGCCTTGACTATTCCTGGTCTAGCTCTACTTCCTTCGAAGCTCCACTTTTTGATAGAGATTGGTTTAGTCACTCAAGCATTGCTCTTATGTCACATTGAGAACCGATTTTTTAATTACTCTGGGATATATTATTATGGATTTGAGGATGATGTAATGTATCCAAGCTACATGGTTCTCGTGACAACATTTGTGGGTTTAGCTTTGGTGAGAAGACTATCTGCGGATCATCGAATTGGTGCGAAGGTAGTTTGGATTTTGACATGTCATTATTCTGCAAAGATGGGTATGCTAGTGATTTCATCAAAGTTGGTTGTCTGGATGTTAGCTGTTCTGTTGTTGGCTGTAACGCCACCATTGCTTCTCTACAAGGATAAGTCAAGGACAGCCTCAAAGATGCAAACCTGGCAAGGTTATACACACACAGGTGTGGTTTCCTTATCAGTTTGGTTTTGTCGTGAAACAATCTTTGAAGCCTTGCAAAGGTGGAATGGAAGAGCTCCCTCTGATGGCCTACTCTTGGGCTTCTGTATTGTCTTGATGGGCTTGGCTTGTGTCCCTATTGTGGCTCTCCACTTCTCTCATGTCTTGCTTTCGATTTTCTCAATGGATACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

448

Amino Acids

49.68

Weight (kDa)

8.64

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13390 AT5G13390
fragaria_vesca	FvH4_4g22440
malus_domestica	MD13G1132200.v1.1 MD16G1142500.v1.1
prunus_persica	Prupe.1G213300_v2.0.a1
pyrus_communis	pycom13g11500 pycom16g11290
rosa_chinensis	RchiOBHm_Chr4g0402251 RchiOBHm_Chr4g0428701
rosa_laevigata	RLG00000007134
rosa_multiflora	Rmu_sc0003316.1_g000007
rosa_roxburghii	Rroxscaffold_5G00370370
rosa_rugosa	Rorug04G0227300
rosa_samantha	Rh4AG284500 Rh4BG290500 Rh4CG306700 Rh4DG288100 Rh5DG506600
rosa_wichuraiana	Rw0G020630 Rw4G015480 Rw4G024710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	355, 419
AccB7I	CCANNNNNTGG	1 cut(s)	148
AciI	CCGC	2 cut(s)	362, 953
AclWI	GGATC	3 cut(s)	61, 669, 963
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	3 cut(s)	189, 436, 528
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	2 cut(s)	59, 214
AfiI	CCNNNNNNNGG	7 cut(s)	148, 228, 229, 1212, 1238, 1249, 1294
AflIII	ACRYGT	2 cut(s)	205, 992
AgsI	TTSAA	6 cut(s)	196, 266, 370, 644, 721, 1202
AjnI	CCWGG	4 cut(s)	12, 459, 745, 1133
AjuI	GAANNNNNNNTTGG	4 cut(s)	362, 394, 713, 745
AleI	CACNNNNGTG	2 cut(s)	1155, 1157
Alw21I	GWGCWC	1 cut(s)	1231
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	3 cut(s)	61, 669, 963
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	2 cut(s)	732, 1240
ApeKI	GCWGC	3 cut(s)	407, 456, 494
ApoI	RAATTY	1 cut(s)	261
Asp700I	GAANNNNTTC	2 cut(s)	348, 698
AspLEI	GCGC	2 cut(s)	123, 430
AspS9I	GGNCC	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	394, 949
AsuII	TTCGAA	1 cut(s)	767
AvaII	GGWCC	1 cut(s)	186
BanI	GGYRCC	2 cut(s)	355, 419
BanII	GRGCYC	1 cut(s)	1231
BauI	CACGAG	1 cut(s)	908
BbsI	GAAGAC	1 cut(s)	949
Bbv12I	GWGCWC	1 cut(s)	1231
BbvI	GCAGC	3 cut(s)	419, 443, 481
BccI	CCATC	7 cut(s)	22, 601, 622, 670, 1006, 1232, 1264
BciT130I	CCWGG	4 cut(s)	14, 461, 747, 1135
BciVI	GTATCC	3 cut(s)	149, 900, 1333
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	2 cut(s)	752, 1022
BfuI	GTATCC	3 cut(s)	149, 900, 1333
BisI	GCNGC	3 cut(s)	408, 457, 495
BlsI	GCNGC	3 cut(s)	409, 458, 496
Bme1390I	CCNGG	4 cut(s)	14, 461, 747, 1135
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	4 cut(s)	39, 357, 421, 623
BmrFI	CCNGG	4 cut(s)	14, 461, 747, 1135
BmrI	ACTGGG	1 cut(s)	189
BmsI	GCATC	2 cut(s)	436, 1116
BmuI	ACTGGG	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	949
BpmI	CTGGAG	2 cut(s)	432, 519
Bpu14I	TTCGAA	1 cut(s)	767
BpuEI	CTTGAG	1 cut(s)	789
BsaAI	YACGTR	1 cut(s)	1344
BsaHI	GRCGYC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	7 cut(s)	148, 228, 229, 1212, 1238, 1249, 1294
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	2 cut(s)	809, 1085
BseBI	CCWGG	4 cut(s)	14, 461, 747, 1135
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	4 cut(s)	593, 681, 883, 1056
BseLI	CCNNNNNNNGG	7 cut(s)	148, 228, 229, 1212, 1238, 1249, 1294
BseMI	GCAATG	2 cut(s)	809, 1085
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	3 cut(s)	419, 443, 481
BseYI	CCCAGC	1 cut(s)	430
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	2 cut(s)	734, 1242
BshNI	GGYRCC	2 cut(s)	355, 419
BsiHKAI	GWGCWC	1 cut(s)	1231
BsiWI	CGTACG	1 cut(s)	57
BslFI	GGGAC	2 cut(s)	673, 1271
BslI	CCNNNNNNNGG	7 cut(s)	148, 228, 229, 1212, 1238, 1249, 1294
BsmAI	GTCTC	1 cut(s)	22
BsmFI	GGGAC	2 cut(s)	673, 1271
BsnI	GGCC	2 cut(s)	734, 1242
Bso31I	GGTCTC	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	767
Bsp1286I	GDGCHC	1 cut(s)	1231
Bsp1407I	TGTACA	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	53, 661, 955
BspACI	CCGC	2 cut(s)	362, 953
BspANI	GGCC	2 cut(s)	734, 1242
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	4 cut(s)	39, 357, 421, 623
BspPI	GGATC	3 cut(s)	61, 669, 963
BspQI	GCTCTTC	1 cut(s)	1219
BspT104I	TTCGAA	1 cut(s)	767
BspT107I	GGYRCC	2 cut(s)	355, 419
BspTNI	GGTCTC	1 cut(s)	22
BsrDI	GCAATG	2 cut(s)	809, 1085
BsrGI	TGTACA	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	3 cut(s)	53, 661, 955
BssNI	GRCGYC	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	908
BssT1I	CCWWGG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	908
Bst2UI	CCWGG	4 cut(s)	14, 461, 747, 1135
Bst6I	CTCTTC	2 cut(s)	578, 1219
BstACI	GRCGYC	1 cut(s)	279
BstAUI	TGTACA	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	1344
BstBI	TTCGAA	1 cut(s)	767
BstC8I	GCNNGC	3 cut(s)	553, 568, 682
BstDEI	CTNAG	1 cut(s)	237
BstENI	CCTNNNNNAGG	1 cut(s)	1210
BstF5I	GGATG	4 cut(s)	593, 681, 883, 1056
BstHHI	GCGC	2 cut(s)	123, 430
BstKTI	GATC	3 cut(s)	56, 664, 958
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	3 cut(s)	53, 661, 955
BstMWI	GCNNNNNNNGC	5 cut(s)	413, 470, 500, 1087, 1135
BstNI	CCWGG	4 cut(s)	14, 461, 747, 1135
BstNSI	RCATGY	3 cut(s)	209, 688, 996
BstSCI	CCNGG	4 cut(s)	12, 459, 745, 1133
BstV1I	GCAGC	3 cut(s)	419, 443, 481
BstV2I	GAAGAC	1 cut(s)	949
BstX2I	RGATCY	1 cut(s)	661
BstXI	CCANNNNNNTGG	2 cut(s)	28, 338
BstYI	RGATCY	1 cut(s)	661
BsuI	GTATCC	3 cut(s)	149, 900, 1333
BsuRI	GGCC	2 cut(s)	734, 1242
BtsCI	GGATG	4 cut(s)	593, 681, 883, 1056
BtsI	GCAGTG	2 cut(s)	468, 536
BtsIMutI	CAGTG	2 cut(s)	468, 536
Cac8I	GCNNGC	3 cut(s)	553, 568, 682
CaiI	CAGNNNCTG	1 cut(s)	551
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	2 cut(s)	123, 430
Cfr13I	GGNCC	1 cut(s)	186
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	58, 213
CspCI	CAANNNNNGTGG	2 cut(s)	903, 938
CviAII	CATG	8 cut(s)	190, 206, 271, 636, 685, 901, 993, 1313
CviQI	GTAC	2 cut(s)	58, 213
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	3 cut(s)	55, 663, 957
DpnII	GATC	3 cut(s)	53, 661, 955
Eam1104I	CTCTTC	2 cut(s)	578, 1219
EarI	CTCTTC	2 cut(s)	578, 1219
Ecl136II	GAGCTC	1 cut(s)	1229
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	1231
Eco31I	GGTCTC	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	1229
Eco57I	CTGAAG	3 cut(s)	189, 436, 528
EcoICRI	GAGCTC	1 cut(s)	1229
EcoNI	CCTNNNNNAGG	1 cut(s)	1210
EcoRI	GAATTC	1 cut(s)	261
EcoRII	CCWGG	4 cut(s)	12, 459, 745, 1133
EcoRV	GATATC	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	1231
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	8 cut(s)	193, 209, 274, 639, 688, 904, 996, 1316
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FaqI	GGGAC	2 cut(s)	673, 1271
FatI	CATG	8 cut(s)	189, 205, 270, 635, 684, 900, 992, 1312
Fnu4HI	GCNGC	3 cut(s)	408, 457, 495
FokI	GGATG	4 cut(s)	580, 688, 890, 1063
FriOI	GRGCYC	1 cut(s)	1231
Fsp4HI	GCNGC	3 cut(s)	408, 457, 495
FspBI	CTAG	2 cut(s)	752, 1022
GlaI	GCGC	2 cut(s)	122, 429
GluI	GCNGC	3 cut(s)	408, 457, 495
GsaI	CCCAGC	1 cut(s)	434
GsuI	CTGGAG	2 cut(s)	432, 519
HaeIII	GGCC	2 cut(s)	734, 1242
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	2 cut(s)	123, 430
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	8 cut(s)	193, 209, 274, 639, 688, 904, 996, 1316
Hin6I	GCGC	2 cut(s)	121, 428
HinP1I	GCGC	2 cut(s)	121, 428
HinfI	GANTC	1 cut(s)	241
HphI	GGTGA	2 cut(s)	394, 949
Hpy166II	GTNNAC	2 cut(s)	186, 213
Hpy188I	TCNGA	3 cut(s)	246, 445, 1237
Hpy188III	TCNNGA	5 cut(s)	271, 910, 1048, 1187, 1267
Hpy8I	GTNNAC	2 cut(s)	186, 213
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	6 cut(s)	460, 542, 552, 709, 774, 967
HpyCH4IV	ACGT	1 cut(s)	1343
HpyCH4V	TGCA	6 cut(s)	407, 649, 705, 1007, 1129, 1210
HpyF10VI	GCNNNNNNNGC	5 cut(s)	413, 470, 500, 1087, 1135
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	1343
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	8 cut(s)	193, 209, 274, 639, 688, 904, 996, 1316
HspAI	GCGC	2 cut(s)	121, 428
Kzo9I	GATC	3 cut(s)	53, 661, 955
LguI	GCTCTTC	1 cut(s)	1219
LmnI	GCTCC	5 cut(s)	413, 500, 621, 777, 1234
Lsp1109I	GCAGC	3 cut(s)	419, 443, 481
LweI	GCATC	2 cut(s)	436, 1116
MaeI	CTAG	2 cut(s)	752, 1022
MaeII	ACGT	1 cut(s)	1343
MaeIII	GTNAC	7 cut(s)	232, 382, 631, 799, 821, 910, 1075
MalI	GATC	3 cut(s)	55, 663, 957
MboI	GATC	3 cut(s)	53, 661, 955
MboII	GAAGA	3 cut(s)	595, 954, 1236
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	1 cut(s)	1231
MluCI	AATT	6 cut(s)	115, 261, 370, 652, 844, 963
MnlI	CCTC	8 cut(s)	233, 251, 307, 369, 395, 868, 1129, 1243
MroXI	GAANNNNTTC	2 cut(s)	348, 698
MseI	TTAA	2 cut(s)	114, 843
MslI	CAYNNNNRTG	4 cut(s)	26, 353, 1155, 1157
MspA1I	CMGCKG	2 cut(s)	410, 456
MspR9I	CCNGG	4 cut(s)	14, 461, 747, 1135
MvaI	CCWGG	4 cut(s)	14, 461, 747, 1135
MwoI	GCNNNNNNNGC	5 cut(s)	413, 470, 500, 1087, 1135
NdeII	GATC	3 cut(s)	53, 661, 955
NlaIII	CATG	8 cut(s)	193, 209, 274, 639, 688, 904, 996, 1316
NlaIV	GGNNCC	4 cut(s)	39, 357, 421, 623
NmuCI	GTSAC	5 cut(s)	232, 382, 799, 821, 910
NspI	RCATGY	3 cut(s)	209, 688, 996
NspV	TTCGAA	1 cut(s)	767
OliI	CACNNNNGTG	2 cut(s)	1155, 1157
PagI	TCATGA	1 cut(s)	270
PciI	ACATGT	2 cut(s)	205, 992
PciSI	GCTCTTC	1 cut(s)	1219
PdmI	GAANNNNTTC	2 cut(s)	348, 698
PfeI	GAWTC	1 cut(s)	241
Pfl23II	CGTACG	1 cut(s)	57
PflMI	CCANNNNNTGG	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	409, 458, 496
Ppu21I	YACGTR	1 cut(s)	1344
PscI	ACATGT	2 cut(s)	205, 992
Psp124BI	GAGCTC	1 cut(s)	1231
Psp6I	CCWGG	4 cut(s)	12, 459, 745, 1133
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	4 cut(s)	12, 459, 745, 1133
PspLI	CGTACG	1 cut(s)	57
PspN4I	GGNNCC	4 cut(s)	39, 357, 421, 623
PspPI	GGNCC	1 cut(s)	186
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	661
PvuII	CAGCTG	2 cut(s)	410, 456
RsaI	GTAC	2 cut(s)	59, 214
RsaNI	GTAC	2 cut(s)	58, 213
RseI	CAYNNNNRTG	4 cut(s)	26, 353, 1155, 1157
SacI	GAGCTC	1 cut(s)	1231
SapI	GCTCTTC	1 cut(s)	1219
SaqAI	TTAA	2 cut(s)	114, 843
SatI	GCNGC	3 cut(s)	408, 457, 495
Sau3AI	GATC	3 cut(s)	53, 661, 955
Sau96I	GGNCC	1 cut(s)	186
ScrFI	CCNGG	4 cut(s)	14, 461, 747, 1135
SduI	GDGCHC	1 cut(s)	1231
SfaNI	GCATC	2 cut(s)	436, 1116
SfuI	TTCGAA	1 cut(s)	767
SinI	GGWCC	1 cut(s)	186
SmiMI	CAYNNNNRTG	4 cut(s)	26, 353, 1155, 1157
SmlI	CTYRAG	1 cut(s)	804
SmoI	CTYRAG	1 cut(s)	804
Sse9I	AATT	6 cut(s)	115, 261, 370, 652, 844, 963
SsiI	CCGC	2 cut(s)	362, 953
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	2 cut(s)	752, 1022
SstI	GAGCTC	1 cut(s)	1231
StyD4I	CCNGG	4 cut(s)	12, 459, 745, 1133
StyI	CCWWGG	1 cut(s)	108
TaiI	ACGT	1 cut(s)	1346
TaqI	TCGA	3 cut(s)	767, 961, 1325
TasI	AATT	6 cut(s)	115, 261, 370, 652, 844, 963
TatI	WGTACW	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	114, 843
Tru9I	TTAA	2 cut(s)	114, 843
TscAI	CASTG	2 cut(s)	475, 543
TseFI	GTSAC	5 cut(s)	232, 382, 799, 821, 910
TseI	GCWGC	3 cut(s)	407, 456, 494
Tsp45I	GTSAC	5 cut(s)	232, 382, 799, 821, 910
TspDTI	ATGAA	4 cut(s)	36, 287, 324, 1020
TspRI	CASTG	2 cut(s)	475, 543
Van91I	CCANNNNNTGG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	186
XagI	CCTNNNNNAGG	1 cut(s)	1210
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	3 cut(s)	209, 688, 996
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XmnI	GAANNNNTTC	2 cut(s)	348, 698
XspI	CTAG	2 cut(s)	752, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.