Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009466

Physical Location & Seq

Genomic Coordinates Reverse (-)

79164380 .. 79168743

Gene Structure 4364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG506600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCCTTCAGCTCCCCTCGCTTTCACTGCTCTGGCTCTTGTAGTTAGTGCTGCTGGAGCTATCGTTGTCGGATTTCCTGTTTTGTTCCTTCCACTGCCTTCAGTTGCCGGCTTCTATTTGGCTCGCTTTTTTACAAAGAAGAGTGTTCCATCCTACTTTGCTTTTGTTGTGCTTGGGAGCCTGATGGTTACATGGTTTGTAATGCACAATTTCTGGGATCTAAATATTTGGATGGCAGGCATGTCCCTGAAATCCTTCTGCAAACTTGTTATTTTGAATGTTGTCTTGGCCTTGACTATTCCTGGTCTAGCTCTACTTCCTTCGAAGCTCCACTTTTTGACAGAGATTGGTTTAGTCACTCATGCATTGCTCTTATGTGACATTGAGAACCGATTTTTTAATTACTCTGGAATATATTATTATGGATTTGAGGATGATGTAATGTATCCAAGCTACATGGTTCTCGTGACAACATTTGTGGGTTTAGCTTTGGTAAGAAGACTATCTGCAGATCATCGAATTGGCAGTTTGGATTTTGACATGTCTTTATTCTGCAAAGCTGGGGATGAGCTACCGGAGCAGTGGCAGAGGTTCAAGCTGGCTTGGCTTTGTAAGGAGCTGCCGTTGCATAATTCCGGCTTTGATTCAGATTCTCAATGCCCAGAAGAAGTGGATGAGGCAAGAGGATGCCAAGAACTCTGGGATACTGGTGGATTGCAACAAGTGACTTTCAAACTTCAGTTTGCAGAGTCCACTCTTTTTGTTGAGGTACATGATGAACATATAGATGTGGCCTACAGTCCAAGATCTGGCATGAGGCCTTCAAAAGATACTGAAATGCAGAAACAGATTGACAAGAAACTCCACATGCATAGTAGATCTCTTGATGAAACATATGGCACTGAGCTGCATAGTCTCCCTAACCAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

34.99

Weight (kDa)

5.43

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13390 AT5G13390
fragaria_vesca	FvH4_4g22440
malus_domestica	MD13G1132200.v1.1 MD16G1142500.v1.1
prunus_persica	Prupe.1G213300_v2.0.a1
pyrus_communis	pycom13g11500 pycom16g11290
rosa_chinensis	RchiOBHm_Chr4g0402251 RchiOBHm_Chr4g0428701
rosa_laevigata	RLG00000007134
rosa_multiflora	Rmu_sc0003316.1_g000007
rosa_roxburghii	Rroxscaffold_5G00370370
rosa_rugosa	Rorug04G0227300
rosa_samantha	Rh4AG284500 Rh4BG290500 Rh4CG306700 Rh4DG288100 Rh5DG506600
rosa_wichuraiana	Rw0G020630 Rw4G015480 Rw4G024710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	809
AclWI	GGATC	1 cut(s)	225
AcuI	CTGAAG	2 cut(s)	84, 722
AfaI	GTAC	1 cut(s)	771
AfiI	CCNNNNNNNGG	1 cut(s)	809
AflIII	ACRYGT	1 cut(s)	540
AgsI	TTSAA	4 cut(s)	277, 595, 733, 825
AjnI	CCWGG	1 cut(s)	301
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
Alw26I	GTCTC	1 cut(s)	920
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	3 cut(s)	288, 792, 818
ApeKI	GCWGC	3 cut(s)	50, 619, 907
Asp700I	GAANNNNTTC	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	323
BauI	CACGAG	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	505
BbvI	GCAGC	3 cut(s)	37, 606, 894
BccI	CCATC	3 cut(s)	157, 178, 226
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	1 cut(s)	303
BciVI	GTATCC	2 cut(s)	456, 697
BcoDI	GTCTC	1 cut(s)	920
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	2 cut(s)	507, 796
BfuI	GTATCC	2 cut(s)	456, 697
BglII	AGATCT	2 cut(s)	806, 878
BisI	GCNGC	3 cut(s)	51, 620, 908
BlsI	GCNGC	3 cut(s)	52, 621, 909
Bme1390I	CCNGG	1 cut(s)	303
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	677
BpiI	GAAGAC	1 cut(s)	505
BpmI	CTGGAG	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	574
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 608, 638
Bsc4I	CCNNNNNNNGG	1 cut(s)	809
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	712, 925
Bse3DI	GCAATG	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	303
BseGI	GGATG	6 cut(s)	149, 237, 439, 571, 679, 692
BseLI	CCNNNNNNNGG	1 cut(s)	809
BseMI	GCAATG	1 cut(s)	365
BseMII	CTCAG	1 cut(s)	894
BseNI	ACTGG	2 cut(s)	712, 925
BseXI	GCAGC	3 cut(s)	37, 606, 894
BseYI	CCCAGC	1 cut(s)	560
BshFI	GGCC	3 cut(s)	290, 794, 820
BsiSI	CCGG	3 cut(s)	108, 575, 636
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	809
BsmAI	GTCTC	1 cut(s)	920
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	3 cut(s)	290, 794, 820
Bsp119I	TTCGAA	1 cut(s)	323
Bsp143I	GATC	4 cut(s)	217, 511, 806, 878
BspANI	GGCC	3 cut(s)	290, 794, 820
BspCNI	CTCAG	1 cut(s)	895
BspLI	GGNNCC	1 cut(s)	179
BspMAI	CTGCAG	1 cut(s)	511
BspPI	GGATC	1 cut(s)	225
BspT104I	TTCGAA	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	2 cut(s)	712, 925
BssAI	RCCGGY	1 cut(s)	107
BssMI	GATC	4 cut(s)	217, 511, 806, 878
BssSI	CACGAG	1 cut(s)	464
Bst2BI	CACGAG	1 cut(s)	464
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	800
Bst6I	CTCTTC	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	323
BstC8I	GCNNGC	4 cut(s)	109, 124, 238, 600
BstDEI	CTNAG	1 cut(s)	903
BstF5I	GGATG	6 cut(s)	149, 237, 439, 571, 679, 692
BstKTI	GATC	4 cut(s)	220, 514, 809, 881
BstMAI	GTCTC	1 cut(s)	920
BstMBI	GATC	4 cut(s)	217, 511, 806, 878
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 26, 56, 577, 604, 625
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	3 cut(s)	244, 544, 871
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	2 cut(s)	507, 796
BstV1I	GCAGC	3 cut(s)	37, 606, 894
BstV2I	GAAGAC	1 cut(s)	505
BstX2I	RGATCY	3 cut(s)	217, 806, 878
BstYI	RGATCY	3 cut(s)	217, 806, 878
BsuI	GTATCC	2 cut(s)	456, 697
BsuRI	GGCC	3 cut(s)	290, 794, 820
BtsCI	GGATG	6 cut(s)	149, 237, 439, 571, 679, 692
BtsI	GCAGTG	3 cut(s)	24, 92, 587
BtsIMutI	CAGTG	4 cut(s)	24, 92, 587, 900
Cac8I	GCNNGC	4 cut(s)	109, 124, 238, 600
Cfr10I	RCCGGY	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	770
CspCI	CAANNNNNGTGG	4 cut(s)	459, 494, 742, 777
CviAII	CATG	8 cut(s)	192, 241, 362, 457, 541, 773, 814, 868
CviQI	GTAC	1 cut(s)	770
DdeI	CTNAG	1 cut(s)	903
DpnI	GATC	4 cut(s)	219, 513, 808, 880
DpnII	GATC	4 cut(s)	217, 511, 806, 878
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco147I	AGGCCT	1 cut(s)	820
Eco57I	CTGAAG	2 cut(s)	84, 722
EcoRII	CCWGG	1 cut(s)	301
EcoT22I	ATGCAT	2 cut(s)	367, 873
FaeI	CATG	8 cut(s)	195, 244, 365, 460, 544, 776, 817, 871
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	8 cut(s)	191, 240, 361, 456, 540, 772, 813, 867
FauNDI	CATATG	1 cut(s)	895
Fnu4HI	GCNGC	3 cut(s)	51, 620, 908
FokI	GGATG	6 cut(s)	136, 244, 446, 578, 686, 699
Fsp4HI	GCNGC	3 cut(s)	51, 620, 908
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	3 cut(s)	51, 620, 908
GsaI	CCCAGC	1 cut(s)	564
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	290, 794, 820
HapII	CCGG	3 cut(s)	108, 575, 636
Hin1II	CATG	8 cut(s)	195, 244, 365, 460, 544, 776, 817, 871
HinfI	GANTC	3 cut(s)	644, 650, 749
HpaII	CCGG	3 cut(s)	108, 575, 636
Hpy166II	GTNNAC	1 cut(s)	753
Hpy188I	TCNGA	2 cut(s)	71, 649
Hpy188III	TCNNGA	3 cut(s)	408, 466, 884
Hpy8I	GTNNAC	1 cut(s)	753
HpyAV	CCTTC	6 cut(s)	15, 98, 108, 265, 330, 831
HpyCH4III	ACNGT	1 cut(s)	800
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 26, 56, 577, 604, 625
HpyF3I	CTNAG	1 cut(s)	903
Hsp92II	CATG	8 cut(s)	195, 244, 365, 460, 544, 776, 817, 871
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	217, 511, 806, 878
LmnI	GCTCC	6 cut(s)	16, 56, 177, 333, 577, 616
Lsp1109I	GCAGC	3 cut(s)	37, 606, 894
LweI	GCATC	1 cut(s)	677
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	5 cut(s)	187, 355, 377, 466, 724
MalI	GATC	4 cut(s)	219, 513, 808, 880
MboI	GATC	4 cut(s)	217, 511, 806, 878
MboII	GAAGA	3 cut(s)	151, 510, 677
MflI	RGATCY	3 cut(s)	217, 806, 878
MluCI	AATT	4 cut(s)	208, 400, 519, 631
MlyI	GAGTC	1 cut(s)	758
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	7 cut(s)	26, 424, 582, 670, 677, 760, 810
Mph1103I	ATGCAT	2 cut(s)	367, 873
MroNI	GCCGGC	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	1 cut(s)	786
MspI	CCGG	3 cut(s)	108, 575, 636
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	6 cut(s)	17, 26, 56, 577, 604, 625
NaeI	GCCGGC	1 cut(s)	109
NdeI	CATATG	1 cut(s)	895
NdeII	GATC	4 cut(s)	217, 511, 806, 878
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	8 cut(s)	195, 244, 365, 460, 544, 776, 817, 871
NlaIV	GGNNCC	1 cut(s)	179
NmuCI	GTSAC	4 cut(s)	355, 377, 466, 724
NsiI	ATGCAT	2 cut(s)	367, 873
NspI	RCATGY	3 cut(s)	244, 544, 871
NspV	TTCGAA	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	820
PciI	ACATGT	1 cut(s)	540
PdiI	GCCGGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	644, 650
PflMI	CCANNNNNTGG	1 cut(s)	809
PkrI	GCNGC	3 cut(s)	52, 621, 909
PleI	GAGTC	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	757
PscI	ACATGT	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	511
PsuI	RGATCY	3 cut(s)	217, 806, 878
RsaI	GTAC	1 cut(s)	771
RsaNI	GTAC	1 cut(s)	770
RseI	CAYNNNNRTG	1 cut(s)	786
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	3 cut(s)	51, 620, 908
Sau3AI	GATC	4 cut(s)	217, 511, 806, 878
SchI	GAGTC	1 cut(s)	758
ScrFI	CCNGG	1 cut(s)	303
SfaNI	GCATC	1 cut(s)	677
SfcI	CTRYAG	2 cut(s)	507, 796
SfuI	TTCGAA	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	786
Sse9I	AATT	4 cut(s)	208, 400, 519, 631
SseBI	AGGCCT	1 cut(s)	820
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	308
StuI	AGGCCT	1 cut(s)	820
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	800
TaqI	TCGA	2 cut(s)	323, 517
TasI	AATT	4 cut(s)	208, 400, 519, 631
TfiI	GAWTC	2 cut(s)	644, 650
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	4 cut(s)	31, 99, 587, 907
TseFI	GTSAC	4 cut(s)	355, 377, 466, 724
TseI	GCWGC	3 cut(s)	50, 619, 907
Tsp45I	GTSAC	4 cut(s)	355, 377, 466, 724
TspDTI	ATGAA	2 cut(s)	792, 903
TspRI	CASTG	4 cut(s)	31, 99, 587, 907
Van91I	CCANNNNNTGG	1 cut(s)	809
XceI	RCATGY	3 cut(s)	244, 544, 871
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	1 cut(s)	308
Zsp2I	ATGCAT	2 cut(s)	367, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.