Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00940

Orthogroup ID

OG0009466

Physical Location & Seq

Genomic Coordinates Reverse (-)

12028 .. 16551

Gene Structure 4524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G020630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3204 bp

ATGATGCCGCCGGAGCTGCAGCCGCGGTTGTTCCGTCCGTACATCTCAACGGCGGCGAGCGCCTTCTTCTCTCTCCTCCTCTCCTCCTCCAACGCCTTCAGCAATGGCTCCCCGAACCCTAGCCCCCCGACTCCCGCTTCAGCAACGGCGCTGCTGCTTCTAGATCTCTCAAGAACTCGCGATTCACGCCCGCCGCCTTCGCGCACAACGCCAGAATGGCCGTCGCGCTCGTCCCCTGCGCCGCCTTCCTCCTCCTCGATCTCGGCGCGCACTCCGGTCGTCGCAACCCTAACCCTAGGCCTCATGATCTCGTACATCATCGACGCCCTCAACTTCAAGTCCGGTGCCTTCTTCGGCGTCTGGTTCTCCCTCGTCTTCTCTCAGATCGCCTTCTTCTTCAGCTCGTCGCTGTGGACCTCCTTCAATTCGTGGATTCTCGCCGGCCTCGCCGCCTTCCTCTGCGCCGAGACCAATTTCTTGATCGGCGTTTGGGTTCCTCTCCCTCCAGTTCAAGTGGATTCAAATCGAGAATCCTTCAATTGTGCTCGCCCTCGAGCGCCTCCTCTTCGCCTGTCAATGCTTCTTATTACCTCATGGCCTTCAGCTGCGTTTTTCTATTGGCTCTACTCCATTCCTCGCATTTCGTCTTTCAAGACCAAGCAGGATTCCAAGTACCACGGCGGCGAGAGTTGCATCCACACTCTGTATCTGCTGTTCTTCCCGCTACTCTTCCACATTGCCTCTCACTACTCCATCATGTTCTCATCCGCCGCCGCGGTTTCCGATTTGTTCCTGCTCTTCTTCATTCCTTTCCTGTTCCAGCTCCTGGCCTCTACCAGGGGAGCCCTCTGGTGGGTCACTAAGAATCCGAACCAGCTGCGAGGAATTCAAGTCATGAATGGCGCCGTTGCTTTGGTGGTTGTTGTAATCTGCTTGGAGATTAGAGTTGTTTTCCATTCATTTGGGAGGTACATTCAGGTGCCTCCGCCTTTGAATTACCTTTTGGTGACTACTACAATGCTTGGAGGTGCAGCTGGAGCTGGTGCCTTTGCGCTGGGTATGATATCTGATGCCTTCAGCTCCCTGGCTTTCACTGCTCTGGCTGTTGTAGTGAGTGCTGCTGGAGCTATCGTTGTCGGATTTCCTGTTTTGTTCCTTCCACTGCCTTCAGTTGCTGGCTTCTATTTGGCTCGCTTTTTTACAAAGAAGAGTGTTCCATCCTACTTTGCTTTTGTTGTGCTTGGGAGCCTGATGGTTACATGGTTTGTAATGCACAATTTCTGGGATCTAAATATTTGGATGGCAGGCATGTCCCTGAAATCCTTCTGCAAACTTGTTATTTTGAATGTTGTCTTGGCCTTGACTATTCCTGGTCTAGCTCTACTTCCTTCGAAGCTCCACTTTTTGACAGAGATTGGTTTAGTCACTCATGCATTGCTTTTATGTCACATTGAGAACCGATTTTTTAATTTCTCTGGGATATATTATTATGGATTTGAGGATGATGTAATGTATCCAAGCTACATGGTTCTCGTGACAACATTTGTGGGTTTAGCTTTGGTGAGAAGACTGTCTGCGGATCATCGAATTGGTGCGAAGGCAGTTTGGATTTTGACATGTCTTTATTCTGCAAAGCTGGGTATGCTAGTGATTTCATCAAAGTCGGTTGTCTGGATGTCAGCTGTTCTATTGTTGGCTGTAACGCCACCGTTGCTTCTCTACAAGGATAGGTCAAGGACAGCCTCAAAGATGCAAACCTGGCAAGGTTATACACATGCAGGTGTGGTTTCCTTATCAGTTTGGTTTTGTCGTGAAACAATCTTTGAAGCCTTGCAGTGGTGGAATGGAAGAGCTCCCTCTGATGGCCTACTCCTGGGCTTCTGTATTGTCTTGATGGGCTTGGCTTGTGTCCCTATTGTGGCTCTCCACTTCTCTCATGTCTTGATGCTTAGTCTGGTGGTGGCTACTGGCTTGCTCTTTATCCTTTTGCAACCACCTATTCCAGTATCATGGACTTACCGGTCTGACCTAATTAAAGCTGCCCGTCAGTCTGTTGAGGACGTCTCCATATACGGGTTCATCGCACCAAAGCCTATGTGGCCATCATGGCTGCTAATTTGTTTTTATTCCATAGCCATGGGACTTGCTCTAGGTATCTACATATCTACTGAGTTCTTCCTCCAGGCAGCTGTCTTGCATGTCCTCATTGTTGTAACCATGGTGTGTACCTCTGTGTTTGTGGTTTTCACTCATTTCCCATCTGCCTCAAGTACGAAGCTGCTTCCATGGATATTTGCTTTACTAGTAGCTCTCTTTCCTGTGACATATCTTTTGGAGGGCCAAGTGAGAATTAAAAGCAATCTTGGGGATGGTGGATTTGGAGACCTAGGAGAAGAAGAGAGGAAGCTTACAACTCTATTTGCTGTTGAGGGGGCAAGGACATCTCTTCTTGGTCTTTATGCAGCAATTTTCATGCTAGTAGCTCTGGAGGTAAAGTATGAACTCGCCTCATTATTGAGGGAAAAGGCTATTGAAAGGAGTGGAATCAGACACAGTCTTTCTGGTCAAAGCACATCTACTAGCTTTCCTTCAAGAATGAGATTCATGCAACAGCGCCGGGCTTCTAGTATCTCATCCTTCACAATCAAGAAAATGACTGCTGAGGGAGCATGGATGCCAGCAGTTGGTAATGTTGCTACTGTGATGTGCTTTGCCATATGCATCATCTTAAATGTCAATCTCACAGGTGGCTCAAACCGTGCAATATTCTTCCTGGCACCGATTTTGCTGCTACTCAACCAGGACTCGGATTTTGTTGCTGGGTTTGGGGACAAGCAGAGGTATTTCCCTGTTACAATAGTTATATCATCCTACCTAGTCATCACTGCTGTGTACAGCATATGGGAAGAAATCTGGCATGGGAATGTAGGTTGGGGATTGGAAATTGGTGGTCCGGATTGGTTCTTTGCTGTGAAGAATTTGGCACTCACATTCCCGAGCCATATCCTTTTCAACAGGTATGTGTGGAGTTTAACAAAGCAGACAGACTCAACTCCATTGATAACTATGCCCCTTAATTTGCCATCTGTAATAATAACAGATGTGCTGAAGGTTAGGATATTAGGTCTCTTAGGAATTATTTATTCCCTAGCCCAGTATCTAGTATCTAGACAACAGTACATCTCAGGATTGAAGTATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1067

Amino Acids

117.93

Weight (kDa)

9.37

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13390 AT5G13390
fragaria_vesca	FvH4_4g22440
malus_domestica	MD13G1132200.v1.1 MD16G1142500.v1.1
prunus_persica	Prupe.1G213300_v2.0.a1
pyrus_communis	pycom13g11500 pycom16g11290
rosa_chinensis	RchiOBHm_Chr4g0402251 RchiOBHm_Chr4g0428701
rosa_laevigata	RLG00000007134
rosa_multiflora	Rmu_sc0003316.1_g000007
rosa_roxburghii	Rroxscaffold_5G00370370
rosa_rugosa	Rorug04G0227300
rosa_samantha	Rh4AG284500 Rh4BG290500 Rh4CG306700 Rh4DG288100 Rh5DG506600
rosa_wichuraiana	Rw0G020630 Rw4G015480 Rw4G024710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1769
AasI	GACNNNNNNGTC	1 cut(s)	2020
AatII	GACGTC	1 cut(s)	2064
Acc36I	ACCTGC	1 cut(s)	1769
AccB1I	GGYRCC	5 cut(s)	344, 902, 979, 1043, 2776
AccB7I	CCANNNNNTGG	2 cut(s)	826, 2684
AccII	CGCG	6 cut(s)	25, 180, 202, 226, 268, 776
AccIII	TCCGGA	1 cut(s)	2953
AclWI	GGATC	2 cut(s)	1293, 1587
AcoI	YGGCCR	2 cut(s)	218, 2099
AcsI	RAATTY	2 cut(s)	885, 2977
AcuI	CTGAAG	7 cut(s)	82, 123, 382, 585, 1060, 1152, 3128
AcyI	GRCGYC	4 cut(s)	324, 357, 903, 2061
AfaI	GTAC	8 cut(s)	41, 314, 674, 971, 2227, 2272, 2894, 3179
AflIII	ACRYGT	1 cut(s)	1616
AgeI	ACCGGT	1 cut(s)	2019
AhlI	ACTAGT	1 cut(s)	2302
AjnI	CCWGG	9 cut(s)	825, 836, 1083, 1369, 1757, 1872, 2181, 2772, 2799
AjuI	GAANNNNNNNTTGG	4 cut(s)	986, 1018, 1337, 1369
AleI	CACNNNNGTG	1 cut(s)	2888
Alw21I	GWGCWC	2 cut(s)	547, 1855
Alw26I	GTCTC	4 cut(s)	461, 2068, 2376, 3131
AlwI	GGATC	2 cut(s)	1293, 1587
AlwNI	CAGNNNCTG	2 cut(s)	826, 1175
Ama87I	CYCGRG	2 cut(s)	552, 2995
Aor13HI	TCCGGA	1 cut(s)	2953
AoxI	GGCC	9 cut(s)	218, 298, 442, 596, 828, 1356, 1864, 2099, 2338
ApoI	RAATTY	2 cut(s)	885, 2977
ArsI	GACNNNNNNTTYG	4 cut(s)	2314, 2346, 2795, 2827
AsiGI	ACCGGT	1 cut(s)	2019
Asp700I	GAANNNNTTC	1 cut(s)	1322
AspA2I	CCTAGG	2 cut(s)	295, 2386
AspS9I	GGNCC	3 cut(s)	414, 2338, 2951
AsuC2I	CCSGG	1 cut(s)	2618
AsuHPI	GGTGA	2 cut(s)	1018, 1573
AsuII	TTCGAA	1 cut(s)	1391
AvaI	CYCGRG	2 cut(s)	552, 2995
AvaII	GGWCC	2 cut(s)	414, 2951
AvrII	CCTAGG	2 cut(s)	295, 2386
BalI	TGGCCA	1 cut(s)	2101
BanI	GGYRCC	5 cut(s)	344, 902, 979, 1043, 2776
BanII	GRGCYC	2 cut(s)	847, 1855
BauI	CACGAG	1 cut(s)	1532
BbsI	GAAGAC	2 cut(s)	367, 1573
Bbv12I	GWGCWC	2 cut(s)	547, 1855
BbvCI	CCTCAGC	1 cut(s)	2661
BceAI	ACGGC	5 cut(s)	66, 162, 205, 694, 890
BcgI	CGANNNNNNTGC	6 cut(s)	259, 293, 859, 893, 2770, 2804
BciT130I	CCWGG	9 cut(s)	827, 838, 1085, 1371, 1759, 1874, 2183, 2774, 2801
BciVI	GTATCC	1 cut(s)	1524
BcnI	CCSGG	1 cut(s)	2618
BcoDI	GTCTC	4 cut(s)	461, 2068, 2376, 3131
BcuI	ACTAGT	1 cut(s)	2302
BfmI	CTRYAG	1 cut(s)	17
BfoI	RGCGCY	5 cut(s)	63, 152, 560, 906, 2617
BfuAI	ACCTGC	1 cut(s)	1769
BfuI	GTATCC	1 cut(s)	1524
BglI	GCCNNNNNGGC	3 cut(s)	217, 2098, 2107
BglII	AGATCT	1 cut(s)	163
BlnI	CCTAGG	2 cut(s)	295, 2386
Bme18I	GGWCC	2 cut(s)	414, 2951
BmeT110I	CYCGRG	2 cut(s)	552, 2995
BmgT120I	GGNCC	3 cut(s)	414, 2338, 2951
BmiI	GGNNCC	9 cut(s)	109, 346, 495, 844, 904, 981, 1045, 1247, 2778
BmrI	ACTGGG	1 cut(s)	3148
BmsI	GCATC	6 cut(s)	702, 1060, 1740, 1935, 2664, 2730
BmuI	ACTGGG	1 cut(s)	3148
BpiI	GAAGAC	2 cut(s)	367, 1573
BplI	GAGNNNNNCTC	2 cut(s)	2048, 2080
BpmI	CTGGAG	5 cut(s)	489, 1056, 1143, 2165, 2507
Bpu10I	CCTNAGC	1 cut(s)	2661
Bpu14I	TTCGAA	1 cut(s)	1391
BpuEI	CTTGAG	2 cut(s)	154, 2251
BpuMI	CCSGG	1 cut(s)	2618
BsaBI	GATNNNNATC	1 cut(s)	522
BsaHI	GRCGYC	4 cut(s)	324, 357, 903, 2061
BsaI	GGTCTC	3 cut(s)	461, 2376, 3131
BsaWI	WCCGGW	4 cut(s)	274, 341, 2019, 2953
BsaXI	ACNNNNNCTCC	4 cut(s)	1116, 1146, 2480, 2510
Bse118I	RCCGGY	2 cut(s)	440, 2019
Bse1I	ACTGG	4 cut(s)	506, 1972, 2003, 3154
Bse3DI	GCAATG	3 cut(s)	109, 735, 1433
Bse8I	GATNNNNATC	1 cut(s)	522
BseAI	TCCGGA	1 cut(s)	2953
BseBI	CCWGG	9 cut(s)	827, 838, 1085, 1371, 1759, 1874, 2183, 2774, 2801
BseJI	GATNNNNATC	1 cut(s)	522
BseMI	GCAATG	3 cut(s)	109, 735, 1433
BseMII	CTCAG	4 cut(s)	395, 2160, 2652, 3198
BseNI	ACTGG	4 cut(s)	506, 1972, 2003, 3154
BsePI	GCGCGC	1 cut(s)	266
BseRI	GAGGAG	7 cut(s)	65, 68, 73, 76, 241, 244, 552
BseYI	CCCAGC	3 cut(s)	1054, 1636, 2819
BsgI	GTGCAG	1 cut(s)	1050
Bsh1236I	CGCG	6 cut(s)	25, 180, 202, 226, 268, 776
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	9 cut(s)	220, 300, 444, 598, 830, 1358, 1866, 2101, 2340
BshNI	GGYRCC	5 cut(s)	344, 902, 979, 1043, 2776
BshTI	ACCGGT	1 cut(s)	2019
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	2 cut(s)	547, 1855
BsiHKCI	CYCGRG	2 cut(s)	552, 2995
BsiSI	CCGG	7 cut(s)	11, 275, 342, 441, 2020, 2617, 2954
BslFI	GGGAC	5 cut(s)	217, 1297, 1895, 2154, 2843
BsmAI	GTCTC	4 cut(s)	461, 2068, 2376, 3131
BsmBI	CGTCTC	1 cut(s)	2068
BsmFI	GGGAC	5 cut(s)	217, 1297, 1895, 2154, 2843
BsnI	GGCC	9 cut(s)	220, 300, 444, 598, 830, 1358, 1866, 2101, 2340
Bso31I	GGTCTC	3 cut(s)	461, 2376, 3131
BsoBI	CYCGRG	2 cut(s)	552, 2995
Bsp119I	TTCGAA	1 cut(s)	1391
Bsp1286I	GDGCHC	3 cut(s)	547, 847, 1855
Bsp13I	TCCGGA	1 cut(s)	2953
Bsp1407I	TGTACA	1 cut(s)	2892
Bsp143I	GATC	7 cut(s)	163, 258, 306, 384, 480, 1285, 1579
Bsp19I	CCATGG	3 cut(s)	2136, 2217, 2285
Bsp68I	TCGCGA	1 cut(s)	180
BspANI	GGCC	9 cut(s)	220, 300, 444, 598, 830, 1358, 1866, 2101, 2340
BspCNI	CTCAG	4 cut(s)	394, 2161, 2653, 3197
BspEI	TCCGGA	1 cut(s)	2953
BspFNI	CGCG	6 cut(s)	25, 180, 202, 226, 268, 776
BspHI	TCATGA	2 cut(s)	303, 894
BspLI	GGNNCC	9 cut(s)	109, 346, 495, 844, 904, 981, 1045, 1247, 2778
BspMAI	CTGCAG	1 cut(s)	21
BspMI	ACCTGC	1 cut(s)	1769
BspPI	GGATC	2 cut(s)	1293, 1587
BspQI	GCTCTTC	2 cut(s)	803, 1843
BspT104I	TTCGAA	1 cut(s)	1391
BspT107I	GGYRCC	5 cut(s)	344, 902, 979, 1043, 2776
BspTNI	GGTCTC	3 cut(s)	461, 2376, 3131
BsrDI	GCAATG	3 cut(s)	109, 735, 1433
BsrFI	RCCGGY	2 cut(s)	440, 2019
BsrGI	TGTACA	1 cut(s)	2892
BsrI	ACTGG	4 cut(s)	506, 1972, 2003, 3154
BssAI	RCCGGY	2 cut(s)	440, 2019
BssHII	GCGCGC	1 cut(s)	266
BssMI	GATC	7 cut(s)	163, 258, 306, 384, 480, 1285, 1579
BssNI	GRCGYC	4 cut(s)	324, 357, 903, 2061
BssSI	CACGAG	1 cut(s)	1532
BssT1I	CCWWGG	5 cut(s)	295, 2136, 2217, 2285, 2386
Bst2BI	CACGAG	1 cut(s)	1532
Bst2UI	CCWGG	9 cut(s)	827, 838, 1085, 1371, 1759, 1874, 2183, 2774, 2801
Bst4CI	ACNGT	6 cut(s)	1572, 1710, 2555, 2701, 2759, 3177
Bst6I	CTCTTC	7 cut(s)	570, 734, 803, 1202, 1843, 2391, 2451
BstACI	GRCGYC	4 cut(s)	324, 357, 903, 2061
BstAUI	TGTACA	1 cut(s)	2892
BstBI	TTCGAA	1 cut(s)	1391
BstDEI	CTNAG	7 cut(s)	381, 861, 1949, 2169, 2661, 3130, 3184
BstDSI	CCRYGG	6 cut(s)	23, 676, 774, 2136, 2217, 2285
BstENI	CCTNNNNNAGG	1 cut(s)	835
BstFNI	CGCG	6 cut(s)	25, 180, 202, 226, 268, 776
BstH2I	RGCGCY	5 cut(s)	63, 152, 560, 906, 2617
BstKTI	GATC	7 cut(s)	166, 261, 309, 387, 483, 1288, 1582
BstMAI	GTCTC	4 cut(s)	461, 2068, 2376, 3131
BstMBI	GATC	7 cut(s)	163, 258, 306, 384, 480, 1285, 1579
BstMCI	CGRYCG	1 cut(s)	279
BstNI	CCWGG	9 cut(s)	827, 838, 1085, 1371, 1759, 1874, 2183, 2774, 2801
BstNSI	RCATGY	4 cut(s)	1312, 1620, 1778, 2201
BstSFI	CTRYAG	1 cut(s)	17
BstUI	CGCG	6 cut(s)	25, 180, 202, 226, 268, 776
BstV2I	GAAGAC	2 cut(s)	367, 1573
BstX2I	RGATCY	2 cut(s)	163, 1285
BstXI	CCANNNNNNTGG	3 cut(s)	962, 2010, 2137
BstYI	RGATCY	2 cut(s)	163, 1285
BsuI	GTATCC	1 cut(s)	1524
BsuRI	GGCC	9 cut(s)	220, 300, 444, 598, 830, 1358, 1866, 2101, 2340
BtgI	CCRYGG	6 cut(s)	23, 676, 774, 2136, 2217, 2285
BtgZI	GCGATG	1 cut(s)	2065
BtsI	GCAGTG	4 cut(s)	1092, 1160, 1841, 2883
BtsIMutI	CAGTG	4 cut(s)	1092, 1160, 1841, 2883
BtuMI	TCGCGA	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	1769
CaiI	CAGNNNCTG	2 cut(s)	826, 1175
CciI	TCATGA	2 cut(s)	303, 894
Cfr10I	RCCGGY	2 cut(s)	440, 2019
Cfr13I	GGNCC	3 cut(s)	414, 2338, 2951
Cfr42I	CCGCGG	2 cut(s)	26, 777
CseI	GACGC	2 cut(s)	332, 346
Csp6I	GTAC	8 cut(s)	40, 313, 673, 970, 2226, 2271, 2893, 3178
CspAI	ACCGGT	1 cut(s)	2019
CspCI	CAANNNNNGTGG	2 cut(s)	1527, 1562
CviQI	GTAC	8 cut(s)	40, 313, 673, 970, 2226, 2271, 2893, 3178
DdeI	CTNAG	7 cut(s)	381, 861, 1949, 2169, 2661, 3130, 3184
DinI	GGCGCC	1 cut(s)	904
DpnI	GATC	7 cut(s)	165, 260, 308, 386, 482, 1287, 1581
DpnII	GATC	7 cut(s)	163, 258, 306, 384, 480, 1285, 1579
DrdI	GACNNNNNNGTC	1 cut(s)	2020
DseDI	GACNNNNNNGTC	1 cut(s)	2020
EaeI	YGGCCR	2 cut(s)	218, 2099
Eam1104I	CTCTTC	7 cut(s)	570, 734, 803, 1202, 1843, 2391, 2451
EarI	CTCTTC	7 cut(s)	570, 734, 803, 1202, 1843, 2391, 2451
EciI	GGCGGA	2 cut(s)	757, 975
Ecl136II	GAGCTC	1 cut(s)	1853
Eco130I	CCWWGG	5 cut(s)	295, 2136, 2217, 2285, 2386
Eco147I	AGGCCT	1 cut(s)	300
Eco24I	GRGCYC	2 cut(s)	847, 1855
Eco31I	GGTCTC	3 cut(s)	461, 2376, 3131
Eco32I	GATATC	1 cut(s)	1065
Eco47I	GGWCC	2 cut(s)	414, 2951
Eco53kI	GAGCTC	1 cut(s)	1853
Eco57I	CTGAAG	7 cut(s)	82, 123, 382, 585, 1060, 1152, 3128
Eco88I	CYCGRG	2 cut(s)	552, 2995
EcoICRI	GAGCTC	1 cut(s)	1853
EcoNI	CCTNNNNNAGG	1 cut(s)	835
EcoRI	GAATTC	1 cut(s)	885
EcoRII	CCWGG	9 cut(s)	825, 836, 1083, 1369, 1757, 1872, 2181, 2772, 2799
EcoRV	GATATC	1 cut(s)	1065
EcoT14I	CCWWGG	5 cut(s)	295, 2136, 2217, 2285, 2386
EcoT22I	ATGCAT	2 cut(s)	1435, 2723
EcoT38I	GRGCYC	2 cut(s)	847, 1855
EgeI	GGCGCC	1 cut(s)	904
EheI	GGCGCC	1 cut(s)	904
ErhI	CCWWGG	5 cut(s)	295, 2136, 2217, 2285, 2386
Esp3I	CGTCTC	1 cut(s)	2068
FalI	AAGNNNNNCTT	2 cut(s)	1385, 1417
FaqI	GGGAC	5 cut(s)	217, 1297, 1895, 2154, 2843
FauI	CCCGC	3 cut(s)	142, 198, 729
FauNDI	CATATG	2 cut(s)	2717, 2900
FriOI	GRGCYC	2 cut(s)	847, 1855
GsaI	CCCAGC	3 cut(s)	1058, 1640, 2823
GsuI	CTGGAG	5 cut(s)	489, 1056, 1143, 2165, 2507
HaeII	RGCGCY	5 cut(s)	63, 152, 560, 906, 2617
HaeIII	GGCC	9 cut(s)	220, 300, 444, 598, 830, 1358, 1866, 2101, 2340
HapII	CCGG	7 cut(s)	11, 275, 342, 441, 2020, 2617, 2954
HgaI	GACGC	2 cut(s)	332, 346
Hin1I	GRCGYC	4 cut(s)	324, 357, 903, 2061
HindIII	AAGCTT	1 cut(s)	2405
HpaII	CCGG	7 cut(s)	11, 275, 342, 441, 2020, 2617, 2954
HphI	GGTGA	2 cut(s)	1018, 1573
Hpy166II	GTNNAC	3 cut(s)	414, 2226, 2893
Hpy188I	TCNGA	9 cut(s)	384, 784, 870, 1069, 1139, 1861, 2026, 2549, 2809
Hpy8I	GTNNAC	3 cut(s)	414, 2226, 2893
Hpy99I	CGWCG	4 cut(s)	226, 284, 326, 409
HpyCH4III	ACNGT	6 cut(s)	1572, 1710, 2555, 2701, 2759, 3177
HpyCH4IV	ACGT	1 cut(s)	2061
HpyF3I	CTNAG	7 cut(s)	381, 861, 1949, 2169, 2661, 3130, 3184
HpySE526I	ACGT	1 cut(s)	2061
Hsp92I	GRCGYC	4 cut(s)	324, 357, 903, 2061
KasI	GGCGCC	1 cut(s)	902
Kpn2I	TCCGGA	1 cut(s)	2953
KroI	GCCGGC	1 cut(s)	440
KroNI	GCCGGC	1 cut(s)	442
KspI	CCGCGG	2 cut(s)	26, 777
Kzo9I	GATC	7 cut(s)	163, 258, 306, 384, 480, 1285, 1579
LguI	GCTCTTC	2 cut(s)	803, 1843
LweI	GCATC	6 cut(s)	702, 1060, 1740, 1935, 2664, 2730
MaeII	ACGT	1 cut(s)	2061
MalI	GATC	7 cut(s)	165, 260, 308, 386, 482, 1287, 1581
MboI	GATC	7 cut(s)	163, 258, 306, 384, 480, 1285, 1579
MfeI	CAATTG	1 cut(s)	538
MflI	RGATCY	2 cut(s)	163, 1285
MhlI	GDGCHC	3 cut(s)	547, 847, 1855
MlsI	TGGCCA	1 cut(s)	2101
MluNI	TGGCCA	1 cut(s)	2101
Mly113I	GGCGCC	1 cut(s)	903
MlyI	GAGTC	3 cut(s)	124, 2798, 3041
MmeI	TCCRAC	2 cut(s)	114, 1117
Mox20I	TGGCCA	1 cut(s)	2101
Mph1103I	ATGCAT	2 cut(s)	1435, 2723
MroI	TCCGGA	1 cut(s)	2953
MroNI	GCCGGC	1 cut(s)	440
MroXI	GAANNNNTTC	1 cut(s)	1322
MscI	TGGCCA	1 cut(s)	2101
MseI	TTAA	6 cut(s)	1467, 2034, 2352, 2729, 3032, 3075
MslI	CAYNNNNRTG	5 cut(s)	977, 1779, 2135, 2888, 2922
Msp20I	TGGCCA	1 cut(s)	2101
MspA1I	CMGCKG	7 cut(s)	25, 605, 776, 877, 1034, 1682, 2189
MspI	CCGG	7 cut(s)	11, 275, 342, 441, 2020, 2617, 2954
MunI	CAATTG	1 cut(s)	538
MvaI	CCWGG	9 cut(s)	827, 838, 1085, 1371, 1759, 1874, 2183, 2774, 2801
MvnI	CGCG	6 cut(s)	25, 180, 202, 226, 268, 776
NaeI	GCCGGC	1 cut(s)	442
NarI	GGCGCC	1 cut(s)	903
NciI	CCSGG	1 cut(s)	2618
NcoI	CCATGG	3 cut(s)	2136, 2217, 2285
NdeI	CATATG	2 cut(s)	2717, 2900
NdeII	GATC	7 cut(s)	163, 258, 306, 384, 480, 1285, 1579
NgoMIV	GCCGGC	1 cut(s)	440
NlaIV	GGNNCC	9 cut(s)	109, 346, 495, 844, 904, 981, 1045, 1247, 2778
NmeAIII	GCCGAG	2 cut(s)	242, 490
NmuCI	GTSAC	6 cut(s)	856, 1006, 1423, 1445, 1534, 2320
NruI	TCGCGA	1 cut(s)	180
NsiI	ATGCAT	2 cut(s)	1435, 2723
NspI	RCATGY	4 cut(s)	1312, 1620, 1778, 2201
NspV	TTCGAA	1 cut(s)	1391
OliI	CACNNNNGTG	1 cut(s)	2888
PaeR7I	CTCGAG	1 cut(s)	552
PagI	TCATGA	2 cut(s)	303, 894
PaqCI	CACCTGC	1 cut(s)	1769
PauI	GCGCGC	1 cut(s)	266
PceI	AGGCCT	1 cut(s)	300
PciI	ACATGT	1 cut(s)	1616
PciSI	GCTCTTC	2 cut(s)	803, 1843
PdiI	GCCGGC	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	1322
PfeI	GAWTC	8 cut(s)	182, 433, 518, 530, 665, 865, 2544, 2601
PflFI	GACNNNGTC	1 cut(s)	2553
PflMI	CCANNNNNTGG	2 cut(s)	826, 2684
PinAI	ACCGGT	1 cut(s)	2019
PleI	GAGTC	3 cut(s)	124, 2798, 3041
PluTI	GGCGCC	1 cut(s)	906
PpsI	GAGTC	3 cut(s)	124, 2798, 3041
PscI	ACATGT	1 cut(s)	1616
Psp124BI	GAGCTC	1 cut(s)	1855
Psp6I	CCWGG	9 cut(s)	825, 836, 1083, 1369, 1757, 1872, 2181, 2772, 2799
PspFI	CCCAGC	3 cut(s)	1054, 1636, 2819
PspGI	CCWGG	9 cut(s)	825, 836, 1083, 1369, 1757, 1872, 2181, 2772, 2799
PspN4I	GGNNCC	9 cut(s)	109, 346, 495, 844, 904, 981, 1045, 1247, 2778
PspPI	GGNCC	3 cut(s)	414, 2338, 2951
PspXI	VCTCGAGB	1 cut(s)	552
PsrI	GAACNNNNNNTAC	2 cut(s)	698, 730
PstI	CTGCAG	1 cut(s)	21
PstNI	CAGNNNCTG	2 cut(s)	826, 1175
PsuI	RGATCY	2 cut(s)	163, 1285
PsyI	GACNNNGTC	1 cut(s)	2553
PteI	GCGCGC	1 cut(s)	266
PvuII	CAGCTG	5 cut(s)	605, 877, 1034, 1682, 2189
RruI	TCGCGA	1 cut(s)	180
RsaI	GTAC	8 cut(s)	41, 314, 674, 971, 2227, 2272, 2894, 3179
RsaNI	GTAC	8 cut(s)	40, 313, 673, 970, 2226, 2271, 2893, 3178
RseI	CAYNNNNRTG	5 cut(s)	977, 1779, 2135, 2888, 2922
SacI	GAGCTC	1 cut(s)	1855
SacII	CCGCGG	2 cut(s)	26, 777
SapI	GCTCTTC	2 cut(s)	803, 1843
SaqAI	TTAA	6 cut(s)	1467, 2034, 2352, 2729, 3032, 3075
Sau3AI	GATC	7 cut(s)	163, 258, 306, 384, 480, 1285, 1579
Sau96I	GGNCC	3 cut(s)	414, 2338, 2951
SchI	GAGTC	3 cut(s)	124, 2798, 3041
SduI	GDGCHC	3 cut(s)	547, 847, 1855
SfaNI	GCATC	6 cut(s)	702, 1060, 1740, 1935, 2664, 2730
SfcI	CTRYAG	1 cut(s)	17
SfoI	GGCGCC	1 cut(s)	904
Sfr274I	CTCGAG	1 cut(s)	552
Sfr303I	CCGCGG	2 cut(s)	26, 777
SfuI	TTCGAA	1 cut(s)	1391
SgrBI	CCGCGG	2 cut(s)	26, 777
SinI	GGWCC	2 cut(s)	414, 2951
SlaI	CTCGAG	1 cut(s)	552
SmiMI	CAYNNNNRTG	5 cut(s)	977, 1779, 2135, 2888, 2922
SmlI	CTYRAG	3 cut(s)	169, 552, 2266
SmoI	CTYRAG	3 cut(s)	169, 552, 2266
SpeI	ACTAGT	1 cut(s)	2302
SseBI	AGGCCT	1 cut(s)	300
SspDI	GGCGCC	1 cut(s)	902
SspI	AATATT	2 cut(s)	1294, 2766
SstI	GAGCTC	1 cut(s)	1855
StuI	AGGCCT	1 cut(s)	300
StyI	CCWWGG	5 cut(s)	295, 2136, 2217, 2285, 2386
TaaI	ACNGT	6 cut(s)	1572, 1710, 2555, 2701, 2759, 3177
TaiI	ACGT	1 cut(s)	2064
TaqI	TCGA	6 cut(s)	257, 321, 526, 553, 1391, 1585
TatI	WGTACW	2 cut(s)	2892, 3177
TauI	GCSGC	9 cut(s)	10, 25, 56, 196, 244, 452, 684, 773, 776
TfiI	GAWTC	8 cut(s)	182, 433, 518, 530, 665, 865, 2544, 2601
Tru1I	TTAA	6 cut(s)	1467, 2034, 2352, 2729, 3032, 3075
Tru9I	TTAA	6 cut(s)	1467, 2034, 2352, 2729, 3032, 3075
TscAI	CASTG	4 cut(s)	1099, 1167, 1841, 2890
TseFI	GTSAC	6 cut(s)	856, 1006, 1423, 1445, 1534, 2320
Tsp45I	GTSAC	6 cut(s)	856, 1006, 1423, 1445, 1534, 2320
TspDTI	ATGAA	8 cut(s)	793, 911, 948, 1644, 2068, 2461, 2514, 2593
TspGWI	ACGGA	2 cut(s)	23, 27
TspRI	CASTG	4 cut(s)	1099, 1167, 1841, 2890
Tth111I	GACNNNGTC	1 cut(s)	2553
Van91I	CCANNNNNTGG	2 cut(s)	826, 2684
VpaK11BI	GGWCC	2 cut(s)	414, 2951
XagI	CCTNNNNNAGG	1 cut(s)	835
XapI	RAATTY	2 cut(s)	885, 2977
XbaI	TCTAGA	2 cut(s)	160, 3167
XceI	RCATGY	4 cut(s)	1312, 1620, 1778, 2201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2094
XhoI	CTCGAG	1 cut(s)	552
XmaJI	CCTAGG	2 cut(s)	295, 2386
XmnI	GAANNNNTTC	1 cut(s)	1322
ZraI	GACGTC	1 cut(s)	2062
Zsp2I	ATGCAT	2 cut(s)	1435, 2723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.