Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009466

Physical Location & Seq

Genomic Coordinates Forward (+)

50952485 .. 50958910

Gene Structure 6426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG288100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3381 bp

ATGATGCCGCCGGAGCTGCAGCCGCGGTTGTTCCGTCCGTACATCTCAACGGCGGCGAGCGCTTCTTCTTCTCTCTCCTCCTCCTCCTCCAACGCCTTCAGCAATGGCTCCCCGAACCCTAGCCCCACCGACTCCCGCTTCAGCAACGGCGCTGCTGCTTCTAGATCTCTCAAGAACTCGCGATTCACGCCCGCCGCCTTCGCGCACAACGCCAGAATGGCCGTCGCGCTCGTCCCCTGCGCCGCCTTCCTCCTCGATCTCGGCGGCACTCCGGTCGTCGCAACCCTAACCCTAGGCCTCATGATCTCGTACATCATCGACGCCCTCAACTTCAAGTCCGGTGCCTTCTTCGGCGTCTGGTTCTCCCTCGTCTTCTCTCAGATCGCCTTCTTCTTCAGCTCGTCGCTGTGGACCTCCTTCAATTCGTGGATTCTCGCCGGCCTCGCCGCCTTCCTCTGCGCCGAGACCAATTTCTTGATCGGCGTTTGGGTCTCCCTCCAGTTCAAGTGGATTCAAATCGAGAATCCTTCAATTGTGCTCGCCCTCGAGCGCCTCCTCTTCGCCTGTGTTCCCTTCGCCGCCTCCTCACTCTTTACTTGGGCCACCATCTCCGCCGTTGGTATGAGCAATGCTTCTTATTACCTCATGGCCTTCAGCTGCGTTTTCTATTGGCTCTACTCCATTCCTCGCATTTCGTCTTTCAAGACCAAGCAGGATTCCAAGTACCACGGCGGCGAGGTTCCCGATGAGAATTTGATACTCAGCCCCCTCGAGAGTTGCATCCACACTCTGTATCTGCTGTTCTTCCCGCTACTCTTCCACATTGCCTCTCACTACTCCATCATGTTCTCATCCGCCGCCGCGGTTTCCGATTTGTTCCTGCTCTTCTTCATTCCTTTCCTGTTCCAGCTCCTGGCCTCTACCAGGGGAGCCCTCTGGTGGGTCACTAAGAATCCGAACCAGCTGCGAGGAATTCAAGTCATGAATGGCGCCGTTGCTTTGGTGGTTGTTGTAATCTGCTTGGAGATTAGAGTTGTTTTCCATTCATTTGGGAGGTACATTCAGGTGCCTCCGCCTTTGAATTACCTTTTGGTGACTACTACAATGCTTGGAGGTGCAGCTGGAGCTGGTGCCTTTGCGCTGGGTATGATATCTGATGCCTTCAGCTCCCTGGCTTTCACTGCTCTGGCTGTTGTAGTGAGTGCTGCTGGAGCTATCGTTGTCGGATTTCCTGTTTTGTTCCTTCCACTGCCTTCAGTTGCTGGCTTCTATTTGGCTCGCTTTTTTACAAAGAAGAGTGTTCCATCCTACTTTGCTTTTGTTGTGCTTGGGAGCCTGATGGTTACATGGTTTGTAATGCACAATTTCTGGGATCTAAATATTTGGATGGCAGGCATGTCCCTGAAATCCTTCTGCAAACTTGTTATTTTGAATGTTGTCTTGGCCTTGACTATTCCTGGTCTAGCTCTACTTCCTTCGAAGCTCCACTTTTTGACAGAGATTGGTTTAGTCACTCATGCATTGCTTTTATGTCACATTGAGAACCGATTTTTTAATTTCTCTGGGATATATTATTATGGATTTGAGGATGATGTAATGTATCCAAGCTACATGGTTCTCGTGACAACATTTGTGGGTTTAGCTTTGGTGAGAAGACTGTCTGCGGATCATCGAATTGGTGCGAAGGCAGTTTGGATTTTGACATGTCTTTATTCTGCAAAGCTGGGTATGCTAGTGATTTCATCAAAGTCGGTTGTCTGGATGTCAGCTGTTCTATTGTTGGCTGTAACGCCACCGTTGCTTCTCTACAAGGATAGGTCAAGGACAGCCTCAAAGATGCAAACCTGGCAAGGTTATACACATGCAGGTGTGGTTTCCTTATCAGTTTGGTTTTGTCGTGAAACAATCTTTGAAGCCTTGCAGTGGTGGAATGGAAGAGCTCCCTCTGATGGCCTACTCCTGGGCTTCTGTATTGTCTTGATGGGCTTGGCTTGTGTCCCTATTGTGGCTCTCCACTTCTCTCATGTCTTGCCTGCGAAGAGATGCTTAGTTCTGGTGGTGGCTACTGGCTTGCTCTTTATCCTTTTGCAACCACCTATTCCAGTATCATGGACTTACCGGTCTGACCTAATTAAAGCTGCCCGTCAGTCTGTTGATGACGTCTCCATATACGGGTTCATCGCACCAAAGCCTATGTGGCCATCATGGCTGCTAATTGTGGCTATCCTGCTTACTCTAGCTGCTGTTACATCTGTTATACCAATCAAATACATGGTTGAGTTGAGAGTGTTTTATTCCATAGCCATGGGACTTGCTCTAGGTATCTACATATCTACTGAGTTCTTCCTCCAGGCAGCTGTCTTGCATGTCCTCATTGTTGTAACCATGGTGTGTACCTCTGTGTTTGTGGTTTTCACTCATTTCCCATCTGCCTCAAGTACGAAGCTGCTTCCATGGATATTTGCTTTACTAGTAGCTCTCTTTCCTGTGACATATCTTTTGGAGGGCCAAGTGAGAATTAAAAGCATTCTTGGGGATGGTGGATTTGGAGACCTAGGAGAAGAAGAGAGGAAGCTTACAACTCTATTTGCTGTTGAGGGGGCAAGGACATCTCTTCTTGGTCTTTATGCAGCAATTTTCATGCTAGTAGCTCTGGAGGTAAAGTATGAACTCGCCTCATTATTGAGGGAAAAGGCTATTGAAAGGAGTGGAATCAGACACAGTCTTTCTGGTCAAAGCACATCTACTAGCTTTCCTTCAAGAATGAGATTCATGCAACAGCGCCGGGCTTCTAGTATCTCATCCTTCACAATCAAGAAAATGACTGCTGAGGGAGCATGGATGCCAGCAGTTGGTAATGTTGCTACTGTGATGTGCTTTGCCATATGCATCATCTTAAATGTCAATCTCACAGGTGGCTCAAACCGTGCAATATTCTTCCTGGCACCGATTTTGCTGCTACTCAACCAGGACTCGGATTTTGTTGCTGGGTTTGGGGACAAGCAGAGGTATTTCCCTGTTACAATAGTTATATCATCCTACCTAGTCATCACTGCTGTGTACAGCATATGGGAAGAAATCTGGCATGGGAATGTAGGTTGGGGATTGGAAATTGGTGGTCCGGATTGGTTCTTTGCTGTGAAGAATTTGGCACTCCTTATTCTTACATTCCCAAGCCATATCCTTTTCAACAGGTATGTGTGGAGTTTAACAAAGCAGACAGACTCAACTCCATTGATAACTATGCCCCTTAATTTGCCATCTGTAATAATAACAGACGTGCTGAAGGTTAGGATATTAGGTCTCTTAGGAATTATTTATTCCCTAGCCCAGTATCTAGTATCTAGACAACAGTACATCTCAGGATTGAAGTATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1126

Amino Acids

124.1

Weight (kDa)

9.22

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13390 AT5G13390
fragaria_vesca	FvH4_4g22440
malus_domestica	MD13G1132200.v1.1 MD16G1142500.v1.1
prunus_persica	Prupe.1G213300_v2.0.a1
pyrus_communis	pycom13g11500 pycom16g11290
rosa_chinensis	RchiOBHm_Chr4g0402251 RchiOBHm_Chr4g0428701
rosa_laevigata	RLG00000007134
rosa_multiflora	Rmu_sc0003316.1_g000007
rosa_roxburghii	Rroxscaffold_5G00370370
rosa_rugosa	Rorug04G0227300
rosa_samantha	Rh4AG284500 Rh4BG290500 Rh4CG306700 Rh4DG288100 Rh5DG506600
rosa_wichuraiana	Rw0G020630 Rw4G015480 Rw4G024710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1856
AasI	GACNNNNNNGTC	1 cut(s)	2119
AatII	GACGTC	1 cut(s)	2163
Acc36I	ACCTGC	1 cut(s)	1856
AccB1I	GGYRCC	5 cut(s)	341, 989, 1066, 1130, 2944
AccB7I	CCANNNNNTGG	2 cut(s)	913, 2852
AccII	CGCG	5 cut(s)	25, 181, 203, 227, 863
AccIII	TCCGGA	1 cut(s)	3121
AclWI	GGATC	2 cut(s)	1380, 1674
AcoI	YGGCCR	2 cut(s)	219, 2198
AcsI	RAATTY	3 cut(s)	751, 972, 3145
AcuI	CTGAAG	7 cut(s)	82, 124, 379, 637, 1147, 1239, 3305
AcyI	GRCGYC	4 cut(s)	321, 354, 990, 2160
AfaI	GTAC	8 cut(s)	41, 311, 725, 1058, 2395, 2440, 3062, 3356
AfeI	AGCGCT	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	1703
AgeI	ACCGGT	1 cut(s)	2118
AhlI	ACTAGT	1 cut(s)	2470
AjiI	CACGTC	1 cut(s)	3280
AjnI	CCWGG	9 cut(s)	912, 923, 1170, 1456, 1844, 1959, 2349, 2940, 2967
AjuI	GAANNNNNNNTTGG	4 cut(s)	1073, 1105, 1424, 1456
AleI	CACNNNNGTG	1 cut(s)	3056
Alw21I	GWGCWC	2 cut(s)	540, 1942
Alw26I	GTCTC	5 cut(s)	458, 496, 2167, 2544, 3308
AlwI	GGATC	2 cut(s)	1380, 1674
AlwNI	CAGNNNCTG	2 cut(s)	913, 1262
Ama87I	CYCGRG	2 cut(s)	545, 770
Aor13HI	TCCGGA	1 cut(s)	3121
Aor51HI	AGCGCT	1 cut(s)	61
ApoI	RAATTY	3 cut(s)	751, 972, 3145
ArsI	GACNNNNNNTTYG	4 cut(s)	2482, 2514, 2963, 2995
AsiGI	ACCGGT	1 cut(s)	2118
Asp700I	GAANNNNTTC	1 cut(s)	1409
AspA2I	CCTAGG	2 cut(s)	292, 2554
AspS9I	GGNCC	4 cut(s)	411, 600, 2506, 3119
AsuC2I	CCSGG	1 cut(s)	2786
AsuHPI	GGTGA	2 cut(s)	1105, 1660
AsuII	TTCGAA	1 cut(s)	1478
AvaI	CYCGRG	2 cut(s)	545, 770
AvaII	GGWCC	2 cut(s)	411, 3119
AvrII	CCTAGG	2 cut(s)	292, 2554
BalI	TGGCCA	1 cut(s)	2200
BanI	GGYRCC	5 cut(s)	341, 989, 1066, 1130, 2944
BanII	GRGCYC	2 cut(s)	934, 1942
BauI	CACGAG	1 cut(s)	1619
BbsI	GAAGAC	2 cut(s)	364, 1660
Bbv12I	GWGCWC	2 cut(s)	540, 1942
BbvCI	CCTCAGC	1 cut(s)	2829
BceAI	ACGGC	6 cut(s)	66, 163, 206, 599, 745, 977
BcgI	CGANNNNNNTGC	6 cut(s)	256, 290, 946, 980, 2938, 2972
BciT130I	CCWGG	9 cut(s)	914, 925, 1172, 1458, 1846, 1961, 2351, 2942, 2969
BciVI	GTATCC	1 cut(s)	1611
BcnI	CCSGG	1 cut(s)	2786
BcoDI	GTCTC	5 cut(s)	458, 496, 2167, 2544, 3308
BcuI	ACTAGT	1 cut(s)	2470
BfmI	CTRYAG	1 cut(s)	17
BfoI	RGCGCY	5 cut(s)	63, 153, 553, 993, 2785
BfuAI	ACCTGC	1 cut(s)	1856
BfuI	GTATCC	1 cut(s)	1611
BglI	GCCNNNNNGGC	3 cut(s)	218, 2197, 2206
BglII	AGATCT	1 cut(s)	164
BlnI	CCTAGG	2 cut(s)	292, 2554
Bme18I	GGWCC	2 cut(s)	411, 3119
BmeT110I	CYCGRG	2 cut(s)	545, 770
BmgBI	CACGTC	1 cut(s)	3280
BmgT120I	GGNCC	4 cut(s)	411, 600, 2506, 3119
BmiI	GGNNCC	9 cut(s)	109, 343, 741, 931, 991, 1068, 1132, 1334, 2946
BmrI	ACTGGG	1 cut(s)	3325
BmsI	GCATC	6 cut(s)	789, 1147, 1827, 2033, 2832, 2898
BmuI	ACTGGG	1 cut(s)	3325
BpiI	GAAGAC	2 cut(s)	364, 1660
BpmI	CTGGAG	5 cut(s)	482, 1143, 1230, 2333, 2675
Bpu10I	CCTNAGC	1 cut(s)	2829
Bpu14I	TTCGAA	1 cut(s)	1478
BpuEI	CTTGAG	2 cut(s)	155, 2419
BpuMI	CCSGG	1 cut(s)	2786
BsaBI	GATNNNNATC	1 cut(s)	515
BsaHI	GRCGYC	4 cut(s)	321, 354, 990, 2160
BsaI	GGTCTC	4 cut(s)	458, 496, 2544, 3308
BsaWI	WCCGGW	4 cut(s)	271, 338, 2118, 3121
BsaXI	ACNNNNNCTCC	4 cut(s)	1203, 1233, 2648, 2678
Bse118I	RCCGGY	2 cut(s)	437, 2118
Bse1I	ACTGG	4 cut(s)	499, 2071, 2102, 3331
Bse3DI	GCAATG	4 cut(s)	109, 634, 822, 1520
Bse8I	GATNNNNATC	1 cut(s)	515
BseAI	TCCGGA	1 cut(s)	3121
BseBI	CCWGG	9 cut(s)	914, 925, 1172, 1458, 1846, 1961, 2351, 2942, 2969
BseJI	GATNNNNATC	1 cut(s)	515
BseMI	GCAATG	4 cut(s)	109, 634, 822, 1520
BseMII	CTCAG	5 cut(s)	392, 775, 2328, 2820, 3375
BseNI	ACTGG	4 cut(s)	499, 2071, 2102, 3331
BseRI	GAGGAG	7 cut(s)	67, 70, 73, 76, 242, 545, 574
BseYI	CCCAGC	3 cut(s)	1141, 1723, 2987
BsgI	GTGCAG	1 cut(s)	1137
Bsh1236I	CGCG	5 cut(s)	25, 181, 203, 227, 863
Bsh1285I	CGRYCG	1 cut(s)	276
BshNI	GGYRCC	5 cut(s)	341, 989, 1066, 1130, 2944
BshTI	ACCGGT	1 cut(s)	2118
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	2 cut(s)	540, 1942
BsiHKCI	CYCGRG	2 cut(s)	545, 770
BsiSI	CCGG	7 cut(s)	11, 272, 339, 438, 2119, 2785, 3122
BslFI	GGGAC	5 cut(s)	218, 1384, 1982, 2322, 3011
BsmAI	GTCTC	5 cut(s)	458, 496, 2167, 2544, 3308
BsmBI	CGTCTC	1 cut(s)	2167
BsmFI	GGGAC	5 cut(s)	218, 1384, 1982, 2322, 3011
BsmI	GAATGC	1 cut(s)	2526
Bso31I	GGTCTC	4 cut(s)	458, 496, 2544, 3308
BsoBI	CYCGRG	2 cut(s)	545, 770
Bsp119I	TTCGAA	1 cut(s)	1478
Bsp1286I	GDGCHC	3 cut(s)	540, 934, 1942
Bsp13I	TCCGGA	1 cut(s)	3121
Bsp1407I	TGTACA	1 cut(s)	3060
Bsp143I	GATC	7 cut(s)	164, 256, 303, 381, 477, 1372, 1666
Bsp19I	CCATGG	3 cut(s)	2304, 2385, 2453
Bsp68I	TCGCGA	1 cut(s)	181
BspCNI	CTCAG	5 cut(s)	391, 774, 2329, 2821, 3374
BspEI	TCCGGA	1 cut(s)	3121
BspFNI	CGCG	5 cut(s)	25, 181, 203, 227, 863
BspHI	TCATGA	2 cut(s)	300, 981
BspLI	GGNNCC	9 cut(s)	109, 343, 741, 931, 991, 1068, 1132, 1334, 2946
BspMAI	CTGCAG	1 cut(s)	21
BspMI	ACCTGC	1 cut(s)	1856
BspPI	GGATC	2 cut(s)	1380, 1674
BspQI	GCTCTTC	2 cut(s)	890, 1930
BspT104I	TTCGAA	1 cut(s)	1478
BspT107I	GGYRCC	5 cut(s)	341, 989, 1066, 1130, 2944
BspTNI	GGTCTC	4 cut(s)	458, 496, 2544, 3308
BsrDI	GCAATG	4 cut(s)	109, 634, 822, 1520
BsrFI	RCCGGY	2 cut(s)	437, 2118
BsrGI	TGTACA	1 cut(s)	3060
BsrI	ACTGG	4 cut(s)	499, 2071, 2102, 3331
BssAI	RCCGGY	2 cut(s)	437, 2118
BssMI	GATC	7 cut(s)	164, 256, 303, 381, 477, 1372, 1666
BssNI	GRCGYC	4 cut(s)	321, 354, 990, 2160
BssSI	CACGAG	1 cut(s)	1619
BssT1I	CCWWGG	5 cut(s)	292, 2304, 2385, 2453, 2554
Bst2BI	CACGAG	1 cut(s)	1619
Bst2UI	CCWGG	9 cut(s)	914, 925, 1172, 1458, 1846, 1961, 2351, 2942, 2969
Bst4CI	ACNGT	6 cut(s)	1659, 1797, 2723, 2869, 2927, 3354
Bst6I	CTCTTC	8 cut(s)	563, 821, 890, 1289, 1930, 2033, 2559, 2619
BstACI	GRCGYC	4 cut(s)	321, 354, 990, 2160
BstAUI	TGTACA	1 cut(s)	3060
BstBI	TTCGAA	1 cut(s)	1478
BstDEI	CTNAG	8 cut(s)	378, 761, 948, 2047, 2337, 2829, 3307, 3361
BstDSI	CCRYGG	6 cut(s)	23, 727, 861, 2304, 2385, 2453
BstENI	CCTNNNNNAGG	1 cut(s)	922
BstFNI	CGCG	5 cut(s)	25, 181, 203, 227, 863
BstH2I	RGCGCY	5 cut(s)	63, 153, 553, 993, 2785
BstKTI	GATC	7 cut(s)	167, 259, 306, 384, 480, 1375, 1669
BstMAI	GTCTC	5 cut(s)	458, 496, 2167, 2544, 3308
BstMBI	GATC	7 cut(s)	164, 256, 303, 381, 477, 1372, 1666
BstMCI	CGRYCG	1 cut(s)	276
BstNI	CCWGG	9 cut(s)	914, 925, 1172, 1458, 1846, 1961, 2351, 2942, 2969
BstNSI	RCATGY	4 cut(s)	1399, 1707, 1865, 2369
BstSFI	CTRYAG	1 cut(s)	17
BstUI	CGCG	5 cut(s)	25, 181, 203, 227, 863
BstV2I	GAAGAC	2 cut(s)	364, 1660
BstX2I	RGATCY	2 cut(s)	164, 1372
BstXI	CCANNNNNNTGG	3 cut(s)	1049, 2109, 2305
BstYI	RGATCY	2 cut(s)	164, 1372
BsuI	GTATCC	1 cut(s)	1611
BtgI	CCRYGG	6 cut(s)	23, 727, 861, 2304, 2385, 2453
BtgZI	GCGATG	1 cut(s)	2164
BtrI	CACGTC	1 cut(s)	3280
BtsI	GCAGTG	4 cut(s)	1179, 1247, 1928, 3051
BtsIMutI	CAGTG	4 cut(s)	1179, 1247, 1928, 3051
BtuMI	TCGCGA	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	1856
CaiI	CAGNNNCTG	2 cut(s)	913, 1262
CciI	TCATGA	2 cut(s)	300, 981
Cfr10I	RCCGGY	2 cut(s)	437, 2118
Cfr13I	GGNCC	4 cut(s)	411, 600, 2506, 3119
Cfr42I	CCGCGG	2 cut(s)	26, 864
CseI	GACGC	2 cut(s)	329, 343
Csp6I	GTAC	8 cut(s)	40, 310, 724, 1057, 2394, 2439, 3061, 3355
CspAI	ACCGGT	1 cut(s)	2118
CspCI	CAANNNNNGTGG	2 cut(s)	1614, 1649
CviQI	GTAC	8 cut(s)	40, 310, 724, 1057, 2394, 2439, 3061, 3355
DdeI	CTNAG	8 cut(s)	378, 761, 948, 2047, 2337, 2829, 3307, 3361
DinI	GGCGCC	1 cut(s)	991
DpnI	GATC	7 cut(s)	166, 258, 305, 383, 479, 1374, 1668
DpnII	GATC	7 cut(s)	164, 256, 303, 381, 477, 1372, 1666
DrdI	GACNNNNNNGTC	1 cut(s)	2119
DseDI	GACNNNNNNGTC	1 cut(s)	2119
EaeI	YGGCCR	2 cut(s)	219, 2198
Eam1104I	CTCTTC	8 cut(s)	563, 821, 890, 1289, 1930, 2033, 2559, 2619
EarI	CTCTTC	8 cut(s)	563, 821, 890, 1289, 1930, 2033, 2559, 2619
EciI	GGCGGA	3 cut(s)	601, 844, 1062
Ecl136II	GAGCTC	1 cut(s)	1940
Eco130I	CCWWGG	5 cut(s)	292, 2304, 2385, 2453, 2554
Eco147I	AGGCCT	1 cut(s)	297
Eco24I	GRGCYC	2 cut(s)	934, 1942
Eco31I	GGTCTC	4 cut(s)	458, 496, 2544, 3308
Eco32I	GATATC	1 cut(s)	1152
Eco47I	GGWCC	2 cut(s)	411, 3119
Eco47III	AGCGCT	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	1940
Eco57I	CTGAAG	7 cut(s)	82, 124, 379, 637, 1147, 1239, 3305
Eco88I	CYCGRG	2 cut(s)	545, 770
EcoICRI	GAGCTC	1 cut(s)	1940
EcoNI	CCTNNNNNAGG	1 cut(s)	922
EcoRI	GAATTC	1 cut(s)	972
EcoRII	CCWGG	9 cut(s)	912, 923, 1170, 1456, 1844, 1959, 2349, 2940, 2967
EcoRV	GATATC	1 cut(s)	1152
EcoT14I	CCWWGG	5 cut(s)	292, 2304, 2385, 2453, 2554
EcoT22I	ATGCAT	2 cut(s)	1522, 2891
EcoT38I	GRGCYC	2 cut(s)	934, 1942
EgeI	GGCGCC	1 cut(s)	991
EheI	GGCGCC	1 cut(s)	991
ErhI	CCWWGG	5 cut(s)	292, 2304, 2385, 2453, 2554
Esp3I	CGTCTC	1 cut(s)	2167
FalI	AAGNNNNNCTT	4 cut(s)	1472, 1504, 2030, 2062
FaqI	GGGAC	5 cut(s)	218, 1384, 1982, 2322, 3011
FauI	CCCGC	3 cut(s)	143, 199, 816
FauNDI	CATATG	2 cut(s)	2885, 3068
FriOI	GRGCYC	2 cut(s)	934, 1942
GsaI	CCCAGC	3 cut(s)	1145, 1727, 2991
GsuI	CTGGAG	5 cut(s)	482, 1143, 1230, 2333, 2675
HaeII	RGCGCY	5 cut(s)	63, 153, 553, 993, 2785
HapII	CCGG	7 cut(s)	11, 272, 339, 438, 2119, 2785, 3122
HgaI	GACGC	2 cut(s)	329, 343
Hin1I	GRCGYC	4 cut(s)	321, 354, 990, 2160
HindIII	AAGCTT	1 cut(s)	2573
HpaII	CCGG	7 cut(s)	11, 272, 339, 438, 2119, 2785, 3122
HphI	GGTGA	2 cut(s)	1105, 1660
Hpy166II	GTNNAC	3 cut(s)	411, 2394, 3061
Hpy188I	TCNGA	9 cut(s)	381, 871, 957, 1156, 1226, 1948, 2125, 2717, 2977
Hpy8I	GTNNAC	3 cut(s)	411, 2394, 3061
Hpy99I	CGWCG	4 cut(s)	227, 281, 323, 406
HpyCH4III	ACNGT	6 cut(s)	1659, 1797, 2723, 2869, 2927, 3354
HpyCH4IV	ACGT	2 cut(s)	2160, 3279
HpyF3I	CTNAG	8 cut(s)	378, 761, 948, 2047, 2337, 2829, 3307, 3361
HpySE526I	ACGT	2 cut(s)	2160, 3279
Hsp92I	GRCGYC	4 cut(s)	321, 354, 990, 2160
KasI	GGCGCC	1 cut(s)	989
Kpn2I	TCCGGA	1 cut(s)	3121
KroI	GCCGGC	1 cut(s)	437
KroNI	GCCGGC	1 cut(s)	439
KspI	CCGCGG	2 cut(s)	26, 864
Kzo9I	GATC	7 cut(s)	164, 256, 303, 381, 477, 1372, 1666
LguI	GCTCTTC	2 cut(s)	890, 1930
LweI	GCATC	6 cut(s)	789, 1147, 1827, 2033, 2832, 2898
MaeII	ACGT	2 cut(s)	2160, 3279
MalI	GATC	7 cut(s)	166, 258, 305, 383, 479, 1374, 1668
MboI	GATC	7 cut(s)	164, 256, 303, 381, 477, 1372, 1666
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	2 cut(s)	164, 1372
MhlI	GDGCHC	3 cut(s)	540, 934, 1942
MlsI	TGGCCA	1 cut(s)	2200
MluNI	TGGCCA	1 cut(s)	2200
Mly113I	GGCGCC	1 cut(s)	990
MlyI	GAGTC	3 cut(s)	125, 2966, 3218
MmeI	TCCRAC	2 cut(s)	114, 1204
Mox20I	TGGCCA	1 cut(s)	2200
Mph1103I	ATGCAT	2 cut(s)	1522, 2891
MroI	TCCGGA	1 cut(s)	3121
MroNI	GCCGGC	1 cut(s)	437
MroXI	GAANNNNTTC	1 cut(s)	1409
MscI	TGGCCA	1 cut(s)	2200
MseI	TTAA	6 cut(s)	1554, 2133, 2520, 2897, 3209, 3252
MslI	CAYNNNNRTG	5 cut(s)	1064, 1866, 2303, 3056, 3090
Msp20I	TGGCCA	1 cut(s)	2200
MspA1I	CMGCKG	7 cut(s)	25, 657, 863, 964, 1121, 1769, 2357
MspI	CCGG	7 cut(s)	11, 272, 339, 438, 2119, 2785, 3122
MunI	CAATTG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	2526
MvaI	CCWGG	9 cut(s)	914, 925, 1172, 1458, 1846, 1961, 2351, 2942, 2969
MvnI	CGCG	5 cut(s)	25, 181, 203, 227, 863
NaeI	GCCGGC	1 cut(s)	439
NarI	GGCGCC	1 cut(s)	990
NciI	CCSGG	1 cut(s)	2786
NcoI	CCATGG	3 cut(s)	2304, 2385, 2453
NdeI	CATATG	2 cut(s)	2885, 3068
NdeII	GATC	7 cut(s)	164, 256, 303, 381, 477, 1372, 1666
NgoMIV	GCCGGC	1 cut(s)	437
NlaIV	GGNNCC	9 cut(s)	109, 343, 741, 931, 991, 1068, 1132, 1334, 2946
NmeAIII	GCCGAG	2 cut(s)	240, 487
NmuCI	GTSAC	6 cut(s)	943, 1093, 1510, 1532, 1621, 2488
NruI	TCGCGA	1 cut(s)	181
NsiI	ATGCAT	2 cut(s)	1522, 2891
NspI	RCATGY	4 cut(s)	1399, 1707, 1865, 2369
NspV	TTCGAA	1 cut(s)	1478
OliI	CACNNNNGTG	1 cut(s)	3056
PaeR7I	CTCGAG	2 cut(s)	545, 770
PagI	TCATGA	2 cut(s)	300, 981
PaqCI	CACCTGC	1 cut(s)	1856
PceI	AGGCCT	1 cut(s)	297
PciI	ACATGT	1 cut(s)	1703
PciSI	GCTCTTC	2 cut(s)	890, 1930
PctI	GAATGC	1 cut(s)	2526
PdiI	GCCGGC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	1409
PfeI	GAWTC	8 cut(s)	183, 430, 511, 523, 716, 952, 2712, 2769
PflFI	GACNNNGTC	1 cut(s)	2721
PflMI	CCANNNNNTGG	2 cut(s)	913, 2852
PinAI	ACCGGT	1 cut(s)	2118
PleI	GAGTC	3 cut(s)	125, 2966, 3218
PluTI	GGCGCC	1 cut(s)	993
PpsI	GAGTC	3 cut(s)	125, 2966, 3218
PscI	ACATGT	1 cut(s)	1703
Psp124BI	GAGCTC	1 cut(s)	1942
Psp6I	CCWGG	9 cut(s)	912, 923, 1170, 1456, 1844, 1959, 2349, 2940, 2967
PspFI	CCCAGC	3 cut(s)	1141, 1723, 2987
PspGI	CCWGG	9 cut(s)	912, 923, 1170, 1456, 1844, 1959, 2349, 2940, 2967
PspN4I	GGNNCC	9 cut(s)	109, 343, 741, 931, 991, 1068, 1132, 1334, 2946
PspPI	GGNCC	4 cut(s)	411, 600, 2506, 3119
PspXI	VCTCGAGB	1 cut(s)	545
PsrI	GAACNNNNNNTAC	2 cut(s)	785, 817
PstI	CTGCAG	1 cut(s)	21
PstNI	CAGNNNCTG	2 cut(s)	913, 1262
PsuI	RGATCY	2 cut(s)	164, 1372
PsyI	GACNNNGTC	1 cut(s)	2721
PvuII	CAGCTG	5 cut(s)	657, 964, 1121, 1769, 2357
RruI	TCGCGA	1 cut(s)	181
RsaI	GTAC	8 cut(s)	41, 311, 725, 1058, 2395, 2440, 3062, 3356
RsaNI	GTAC	8 cut(s)	40, 310, 724, 1057, 2394, 2439, 3061, 3355
RseI	CAYNNNNRTG	5 cut(s)	1064, 1866, 2303, 3056, 3090
SacI	GAGCTC	1 cut(s)	1942
SacII	CCGCGG	2 cut(s)	26, 864
SapI	GCTCTTC	2 cut(s)	890, 1930
SaqAI	TTAA	6 cut(s)	1554, 2133, 2520, 2897, 3209, 3252
Sau3AI	GATC	7 cut(s)	164, 256, 303, 381, 477, 1372, 1666
Sau96I	GGNCC	4 cut(s)	411, 600, 2506, 3119
SchI	GAGTC	3 cut(s)	125, 2966, 3218
SduI	GDGCHC	3 cut(s)	540, 934, 1942
SfaNI	GCATC	6 cut(s)	789, 1147, 1827, 2033, 2832, 2898
SfcI	CTRYAG	1 cut(s)	17
SfoI	GGCGCC	1 cut(s)	991
Sfr274I	CTCGAG	2 cut(s)	545, 770
Sfr303I	CCGCGG	2 cut(s)	26, 864
SfuI	TTCGAA	1 cut(s)	1478
SgrBI	CCGCGG	2 cut(s)	26, 864
SinI	GGWCC	2 cut(s)	411, 3119
SlaI	CTCGAG	2 cut(s)	545, 770
SmiMI	CAYNNNNRTG	5 cut(s)	1064, 1866, 2303, 3056, 3090
SmlI	CTYRAG	4 cut(s)	170, 545, 770, 2434
SmoI	CTYRAG	4 cut(s)	170, 545, 770, 2434
SpeI	ACTAGT	1 cut(s)	2470
SseBI	AGGCCT	1 cut(s)	297
SspDI	GGCGCC	1 cut(s)	989
SspI	AATATT	2 cut(s)	1381, 2934
SstI	GAGCTC	1 cut(s)	1942
StuI	AGGCCT	1 cut(s)	297
StyI	CCWWGG	5 cut(s)	292, 2304, 2385, 2453, 2554
TaaI	ACNGT	6 cut(s)	1659, 1797, 2723, 2869, 2927, 3354
TaiI	ACGT	2 cut(s)	2163, 3282
TaqI	TCGA	7 cut(s)	255, 318, 519, 546, 771, 1478, 1672
TatI	WGTACW	2 cut(s)	3060, 3354
TfiI	GAWTC	8 cut(s)	183, 430, 511, 523, 716, 952, 2712, 2769
Tru1I	TTAA	6 cut(s)	1554, 2133, 2520, 2897, 3209, 3252
Tru9I	TTAA	6 cut(s)	1554, 2133, 2520, 2897, 3209, 3252
TscAI	CASTG	4 cut(s)	1186, 1254, 1928, 3058
TseFI	GTSAC	6 cut(s)	943, 1093, 1510, 1532, 1621, 2488
Tsp45I	GTSAC	6 cut(s)	943, 1093, 1510, 1532, 1621, 2488
TspDTI	ATGAA	8 cut(s)	880, 998, 1035, 1731, 2167, 2629, 2682, 2761
TspGWI	ACGGA	2 cut(s)	23, 27
TspRI	CASTG	4 cut(s)	1186, 1254, 1928, 3058
Tth111I	GACNNNGTC	1 cut(s)	2721
Van91I	CCANNNNNTGG	2 cut(s)	913, 2852
VpaK11BI	GGWCC	2 cut(s)	411, 3119
XagI	CCTNNNNNAGG	1 cut(s)	922
XapI	RAATTY	3 cut(s)	751, 972, 3145
XbaI	TCTAGA	2 cut(s)	161, 3344
XceI	RCATGY	4 cut(s)	1399, 1707, 1865, 2369
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2193
XhoI	CTCGAG	2 cut(s)	545, 770
XmaJI	CCTAGG	2 cut(s)	292, 2554
XmnI	GAANNNNTTC	1 cut(s)	1409
ZraI	GACGTC	1 cut(s)	2161
Zsp2I	ATGCAT	2 cut(s)	1522, 2891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.