Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0009466

Physical Location & Seq

Genomic Coordinates Forward (+)

50668711 .. 50673343

Gene Structure 4633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G024710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3132 bp

ATGATGCCGCCGGAGCTGCAGCCGCGGTTGTTCCGTCCGTACATCTCAACGGCGGCGAGCGCTTCTTCTTCTCTCTCCTCCTCCTCCTCCAACGCCTTCAGCAATGGCTCCCCGAACCCTAGCCCCACCGACTCCCGCTTCAGCAACGGCGCTGCTGCTTCTAGATCTCTCAAGAACTCGCGATTCACGCCCGCCGCCTTCGCGCACAACGCCAGAATGGCCGTCGCGCTCGTCCCCTGCGCCGCCTTCCTCCTCGATCTCGGCGGCACTCCGGTCGTCGCAACCCTAACCCTAGGCCTCATGATCTCGTACATCATCGACGCCCTCAACTTCAAGTCCGGTGCCTTCTTCGGCGTCTGGTTCTCCCTCGTCTTCTCTCAGATCGCCTTCTTCTTCAGCTCGTCGCTGTGGACCTCCTTCAATTCGTGGATTCTCGCCGGCCTCGCCGCCTTCCTCTGCGCCGAGACCAATTTCTTGATCGGCGTTTGGGTCTCCCTCCAGTTCAAGTGGATTCAAATCGAGAATCCTTCAATTGTGCTCGCCCTCGAGCGCCTCCTCTTCGCCTGTGTCCCTTCCAATGCTTCTTATTACCTCATGGCCTTCAGCTGCGTTTTCTATTGGCTCTACTCCATTCCTCGCATTTCGTCTTTCAAGACCAAGCAGGATTCCAAGTACCACGGCGGCGAGGTTCCCGATGAGAATTTGATACTCAGCCCCCTCGAGAGTTGCATCCACACTCTGTATCTGCTGTTCTTCCCGCTACTCTTCCACATTGCCTCTCACTACTCCATCATGTTCTCATCCGCCGCCGCGGTTTCCGATTTGTTCCTGCTCTTCTTCATTCCTTTCCTGTTCCAGCTCCTGGCCTCTACCAGGGGAGCCCTCTGGTGGGTCACTAAGAATCCGAACCAGCTGCGAGGAATTCAAGTCATGAATGGCGCCGTTGCTTTGGTGGTTGCCGTTGCTTGTTGTGTTTTCCATTCATTTGGGAGGTACATTCAGGTGCCTCCGCCTTTGAATTCCTTTGGTGACTACTACAATGCTGGAGGTGCAGCTGGAGCTGGTGCCTTTGCGCTGGTAGATATATCTGATGCCTTCAGCTCCCTGGCTTTCACTGCTCTGGCTGTTGTAGTGAGTGCTGCTGGAGCTATCGTTGTCGGATTTCCTGTTTTGTTCCTTCCACTGCCTTCAGTTGCTGGCTTCTATTTGGCTCGCTTTTTTACAAAGAAGAGTGTTCCATCCTACTTTGCTTTTGTTGTGCTTGGGAGCCTGATGGTTACATGGTTTGTAATGCACAATTTCTGGGATCTAAATATTTGGATGGCAGGCATGTCCCTGAAATCCTTCTGCAAACTTGTTATTTTGAATGTTGTCTTGGCCTTGACTATTCCTGGTCTAGCTCTACTTCCTTCGAAGCTCCACTTTTTGACAGAGATTGGTTTAGTCACTCATGCATTGCTTTTATGTCACATTGAGAACCGATTTTTTAATTTCTCTGGGATATATTATTATGGATTTGAGGATGATGTAATGTATCCAAGCTACATGGTTCTCGTGACAACATTTGTGGGAGTTTGGATTTTGACATGTCTTTATTCTGCAAAGCTGGGTATGCTAGTGATTTCATCAAAGTCGGTTGTCTGGATGTCAGCTGTTCTATTGTTGGCTGTAACGCCACCGTTGCTTCTCTACAAGGATAGGTCAAGGACAGCCTCAAAGATGCAAACCTGGCAAGGTTATACACATGCAGGTGTGGTTTCCTTATCAGTTTGGTTTTGTCGTGAAACAATCTTTGAAGCCTTGCAGTGGTGGAATGGAAGAGCTCCCTCTGATGGCCTACTCCTGGGCTTCTGTATTGTCTTGATGGGCTTGGCTTGTGTCCCTATTGTGGCTCTCCACTTCTCTCATGTCTTGCCTGCGAAGAGATGCTTAGTTCTGGTGGTGGCTACTGGCTTGCTCTTTATCCTTTTGCAACCACCTATTCCAGTATCATGGACTTACCGGTCTGACCTAATTAAAGCTGCCCGTCAGTCTGTTGATGACGTCTCCATATACGGGTTCATCGCACCAAAGCCTATGTGGCCATCATGGCTGCTAATTGTGGCTATCCTGCTTACTCTAGCTGCTGTTACATCTGTTATACCAATCAAATACATGGTTGAGTTGAGAGTGTTTTATTCCATAGCCATGGGACTTGCTCTAGGTATCTACATATCTACTGAGTTCTTCCTCCAGGCAGCTGTCTTGCATGTCCTCATTGTTGTAACCATGGTGTGTACCTCTGTGTTTGTGGTTTTCACTCATTTCCCATCTGCCTCAAGTACGAAGCTGCTTCCATGGATATTTGCTTTACTAGTAGCTCTCTTTCCTGTGACATATCTTTTGGAGGGCCAAGTGAGAATTAAAAGCATTCTTGGGGATGGTGGATTTGGAGACCTAGGAGAAGAAGAGAGGAAGCTTACAACTCTATTTGCTGTTGAGGGGGCAAGGACATCTCTTCTTGGTCTTTATGCAGCAATTTTCATGCTAGTAGCTCTGGAGGTAAAGTATGAACTCGCCTCATTATTGAGGGAAAAGGCTATTGAAAGGAGTGGAATCAGACACAGTCTTTCTGGTCAAAGCACATCTACTAGCTTTCCTTCAAGAATGAGATTCATGCAACAGTGGCTCAAACCGTGCAATATTCTTCCTGGCACCGATTTTGCTGCTACTCACCAGACTCGATTGATTTTGTTGCTGGGGTTTGGGGACAAGCAGAGGTATTTCCCTGTTACAATAGTTATATCATCCTACCTAGTCATCACTGCTGTGTACAGCATATGGGAAGAAATCTGGCATGGGAATGTAGGTTGGGGATTGGAAATTGGTGGTCCGGATTGGTTCTTTGCTGTGAAGAATTTGGCACTCCTTATTCTTACATTCCCAAGCCATATCCTTTTCAACAGGTATGTGTGGAGTTTAACAAAGCAGACAGACTCAACTCCATTGATAACTATGCCCCTTAATTTGCCATCTGTAATAATAACAGACGTGCTGAAGGTTAGGATATTAGGTCTCTTAGGAATTATTTATTCCCTAGCCCAGTATCTAGTATCTAGACAACAGTACATCTCAGGATTGAAGTATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1043

Amino Acids

115.31

Weight (kDa)

8.99

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13390 AT5G13390
fragaria_vesca	FvH4_4g22440
malus_domestica	MD13G1132200.v1.1 MD16G1142500.v1.1
prunus_persica	Prupe.1G213300_v2.0.a1
pyrus_communis	pycom13g11500 pycom16g11290
rosa_chinensis	RchiOBHm_Chr4g0402251 RchiOBHm_Chr4g0428701
rosa_laevigata	RLG00000007134
rosa_multiflora	Rmu_sc0003316.1_g000007
rosa_roxburghii	Rroxscaffold_5G00370370
rosa_rugosa	Rorug04G0227300
rosa_samantha	Rh4AG284500 Rh4BG290500 Rh4CG306700 Rh4DG288100 Rh5DG506600
rosa_wichuraiana	Rw0G020630 Rw4G015480 Rw4G024710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1739
AasI	GACNNNNNNGTC	1 cut(s)	2002
AatII	GACGTC	1 cut(s)	2046
Acc36I	ACCTGC	1 cut(s)	1739
AccB1I	GGYRCC	5 cut(s)	341, 938, 1003, 1064, 2693
AccB7I	CCANNNNNTGG	1 cut(s)	862
AccII	CGCG	5 cut(s)	25, 181, 203, 227, 812
AccIII	TCCGGA	1 cut(s)	2872
AclWI	GGATC	1 cut(s)	1314
AcoI	YGGCCR	2 cut(s)	219, 2081
AcsI	RAATTY	4 cut(s)	700, 921, 1018, 2896
AcuI	CTGAAG	7 cut(s)	82, 124, 379, 586, 1081, 1173, 3056
AcyI	GRCGYC	4 cut(s)	321, 354, 939, 2043
AfaI	GTAC	8 cut(s)	41, 311, 674, 995, 2278, 2323, 2813, 3107
AfeI	AGCGCT	1 cut(s)	61
AfiI	CCNNNNNNNGG	9 cut(s)	862, 873, 888, 889, 1806, 1832, 1843, 1888, 2055
AflIII	ACRYGT	1 cut(s)	1586
AgeI	ACCGGT	1 cut(s)	2001
AhlI	ACTAGT	1 cut(s)	2353
AjiI	CACGTC	1 cut(s)	3031
AjnI	CCWGG	8 cut(s)	861, 872, 1104, 1390, 1727, 1842, 2232, 2689
AjuI	GAANNNNNNNTTGG	2 cut(s)	1358, 1390
AleI	CACNNNNGTG	1 cut(s)	2807
Alw21I	GWGCWC	2 cut(s)	540, 1825
Alw26I	GTCTC	5 cut(s)	458, 496, 2050, 2427, 3059
AlwI	GGATC	1 cut(s)	1314
AlwNI	CAGNNNCTG	2 cut(s)	862, 1196
Ama87I	CYCGRG	2 cut(s)	545, 719
Aor13HI	TCCGGA	1 cut(s)	2872
Aor51HI	AGCGCT	1 cut(s)	61
AoxI	GGCC	9 cut(s)	219, 295, 439, 597, 864, 1377, 1834, 2081, 2389
ApoI	RAATTY	4 cut(s)	700, 921, 1018, 2896
ArsI	GACNNNNNNTTYG	2 cut(s)	2365, 2397
AsiGI	ACCGGT	1 cut(s)	2001
Asp700I	GAANNNNTTC	1 cut(s)	1343
AspA2I	CCTAGG	2 cut(s)	292, 2437
AspLEI	GCGC	9 cut(s)	62, 152, 205, 229, 242, 461, 552, 941, 1075
AspS9I	GGNCC	3 cut(s)	411, 2389, 2870
AsuHPI	GGTGA	2 cut(s)	1040, 2705
AsuII	TTCGAA	1 cut(s)	1412
AvaI	CYCGRG	2 cut(s)	545, 719
AvaII	GGWCC	2 cut(s)	411, 2870
AvrII	CCTAGG	2 cut(s)	292, 2437
BalI	TGGCCA	1 cut(s)	2083
BanI	GGYRCC	5 cut(s)	341, 938, 1003, 1064, 2693
BanII	GRGCYC	2 cut(s)	883, 1825
BauI	CACGAG	1 cut(s)	1553
BbsI	GAAGAC	1 cut(s)	364
Bbv12I	GWGCWC	2 cut(s)	540, 1825
BceAI	ACGGC	6 cut(s)	66, 163, 206, 694, 926, 944
BcgI	CGANNNNNNTGC	6 cut(s)	256, 290, 895, 929, 2687, 2721
BciT130I	CCWGG	8 cut(s)	863, 874, 1106, 1392, 1729, 1844, 2234, 2691
BciVI	GTATCC	1 cut(s)	1545
BcoDI	GTCTC	5 cut(s)	458, 496, 2050, 2427, 3059
BcuI	ACTAGT	1 cut(s)	2353
BfmI	CTRYAG	1 cut(s)	17
BfoI	RGCGCY	4 cut(s)	63, 153, 553, 942
BfuAI	ACCTGC	1 cut(s)	1739
BfuI	GTATCC	1 cut(s)	1545
BglI	GCCNNNNNGGC	3 cut(s)	218, 2080, 2089
BglII	AGATCT	1 cut(s)	164
BlnI	CCTAGG	2 cut(s)	292, 2437
Bme1390I	CCNGG	8 cut(s)	863, 874, 1106, 1392, 1729, 1844, 2234, 2691
Bme18I	GGWCC	2 cut(s)	411, 2870
BmeT110I	CYCGRG	2 cut(s)	545, 719
BmgBI	CACGTC	1 cut(s)	3031
BmgT120I	GGNCC	3 cut(s)	411, 2389, 2870
BmiI	GGNNCC	9 cut(s)	109, 343, 690, 880, 940, 1005, 1066, 1268, 2695
BmrFI	CCNGG	8 cut(s)	863, 874, 1106, 1392, 1729, 1844, 2234, 2691
BmrI	ACTGGG	1 cut(s)	3076
BmsI	GCATC	4 cut(s)	738, 1081, 1710, 1916
BmuI	ACTGGG	1 cut(s)	3076
BpiI	GAAGAC	1 cut(s)	364
BpmI	CTGGAG	6 cut(s)	482, 1065, 1077, 1164, 2216, 2558
Bpu14I	TTCGAA	1 cut(s)	1412
BpuEI	CTTGAG	2 cut(s)	155, 2302
BsaBI	GATNNNNATC	1 cut(s)	515
BsaHI	GRCGYC	4 cut(s)	321, 354, 939, 2043
BsaI	GGTCTC	4 cut(s)	458, 496, 2427, 3059
BsaWI	WCCGGW	4 cut(s)	271, 338, 2001, 2872
BsaXI	ACNNNNNCTCC	4 cut(s)	1137, 1167, 2531, 2561
Bsc4I	CCNNNNNNNGG	9 cut(s)	862, 873, 888, 889, 1806, 1832, 1843, 1888, 2055
Bse118I	RCCGGY	2 cut(s)	437, 2001
Bse1I	ACTGG	4 cut(s)	499, 1954, 1985, 3082
Bse3DI	GCAATG	3 cut(s)	109, 771, 1454
Bse8I	GATNNNNATC	1 cut(s)	515
BseAI	TCCGGA	1 cut(s)	2872
BseBI	CCWGG	8 cut(s)	863, 874, 1106, 1392, 1729, 1844, 2234, 2691
BseGI	GGATG	8 cut(s)	729, 800, 1238, 1326, 1528, 1650, 2425, 2786
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	9 cut(s)	862, 873, 888, 889, 1806, 1832, 1843, 1888, 2055
BseMI	GCAATG	3 cut(s)	109, 771, 1454
BseMII	CTCAG	4 cut(s)	392, 724, 2211, 3126
BseNI	ACTGG	4 cut(s)	499, 1954, 1985, 3082
BseRI	GAGGAG	6 cut(s)	67, 70, 73, 76, 242, 545
BseYI	CCCAGC	2 cut(s)	1606, 2737
BsgI	GTGCAG	1 cut(s)	1071
Bsh1236I	CGCG	5 cut(s)	25, 181, 203, 227, 812
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	9 cut(s)	221, 297, 441, 599, 866, 1379, 1836, 2083, 2391
BshNI	GGYRCC	5 cut(s)	341, 938, 1003, 1064, 2693
BshTI	ACCGGT	1 cut(s)	2001
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	2 cut(s)	540, 1825
BsiHKCI	CYCGRG	2 cut(s)	545, 719
BsiSI	CCGG	6 cut(s)	11, 272, 339, 438, 2002, 2873
BslFI	GGGAC	6 cut(s)	218, 554, 1318, 1865, 2205, 2762
BslI	CCNNNNNNNGG	9 cut(s)	862, 873, 888, 889, 1806, 1832, 1843, 1888, 2055
BsmAI	GTCTC	5 cut(s)	458, 496, 2050, 2427, 3059
BsmBI	CGTCTC	1 cut(s)	2050
BsmFI	GGGAC	6 cut(s)	218, 554, 1318, 1865, 2205, 2762
BsmI	GAATGC	1 cut(s)	2409
BsnI	GGCC	9 cut(s)	221, 297, 441, 599, 866, 1379, 1836, 2083, 2391
Bso31I	GGTCTC	4 cut(s)	458, 496, 2427, 3059
BsoBI	CYCGRG	2 cut(s)	545, 719
Bsp119I	TTCGAA	1 cut(s)	1412
Bsp1286I	GDGCHC	3 cut(s)	540, 883, 1825
Bsp13I	TCCGGA	1 cut(s)	2872
Bsp1407I	TGTACA	1 cut(s)	2811
Bsp143I	GATC	6 cut(s)	164, 256, 303, 381, 477, 1306
Bsp19I	CCATGG	3 cut(s)	2187, 2268, 2336
Bsp68I	TCGCGA	1 cut(s)	181
BspANI	GGCC	9 cut(s)	221, 297, 441, 599, 866, 1379, 1836, 2083, 2391
BspCNI	CTCAG	4 cut(s)	391, 723, 2212, 3125
BspEI	TCCGGA	1 cut(s)	2872
BspFNI	CGCG	5 cut(s)	25, 181, 203, 227, 812
BspHI	TCATGA	2 cut(s)	300, 930
BspLI	GGNNCC	9 cut(s)	109, 343, 690, 880, 940, 1005, 1066, 1268, 2695
BspMAI	CTGCAG	1 cut(s)	21
BspMI	ACCTGC	1 cut(s)	1739
BspPI	GGATC	1 cut(s)	1314
BspQI	GCTCTTC	2 cut(s)	839, 1813
BspT104I	TTCGAA	1 cut(s)	1412
BspT107I	GGYRCC	5 cut(s)	341, 938, 1003, 1064, 2693
BspTNI	GGTCTC	4 cut(s)	458, 496, 2427, 3059
BsrDI	GCAATG	3 cut(s)	109, 771, 1454
BsrFI	RCCGGY	2 cut(s)	437, 2001
BsrGI	TGTACA	1 cut(s)	2811
BsrI	ACTGG	4 cut(s)	499, 1954, 1985, 3082
BssAI	RCCGGY	2 cut(s)	437, 2001
BssMI	GATC	6 cut(s)	164, 256, 303, 381, 477, 1306
BssNI	GRCGYC	4 cut(s)	321, 354, 939, 2043
BssSI	CACGAG	1 cut(s)	1553
BssT1I	CCWWGG	5 cut(s)	292, 2187, 2268, 2336, 2437
Bst2BI	CACGAG	1 cut(s)	1553
Bst2UI	CCWGG	8 cut(s)	863, 874, 1106, 1392, 1729, 1844, 2234, 2691
Bst4CI	ACNGT	5 cut(s)	1680, 2606, 2664, 2676, 3105
Bst6I	CTCTTC	8 cut(s)	563, 770, 839, 1223, 1813, 1916, 2442, 2502
BstACI	GRCGYC	4 cut(s)	321, 354, 939, 2043
BstAUI	TGTACA	1 cut(s)	2811
BstBI	TTCGAA	1 cut(s)	1412
BstC8I	GCNNGC	9 cut(s)	58, 192, 439, 540, 1198, 1213, 1327, 1917, 1955
BstDEI	CTNAG	7 cut(s)	378, 710, 897, 1930, 2220, 3058, 3112
BstDSI	CCRYGG	6 cut(s)	23, 676, 810, 2187, 2268, 2336
BstENI	CCTNNNNNAGG	1 cut(s)	871
BstF5I	GGATG	8 cut(s)	729, 800, 1238, 1326, 1528, 1650, 2425, 2786
BstFNI	CGCG	5 cut(s)	25, 181, 203, 227, 812
BstH2I	RGCGCY	4 cut(s)	63, 153, 553, 942
BstHHI	GCGC	9 cut(s)	62, 152, 205, 229, 242, 461, 552, 941, 1075
BstKTI	GATC	6 cut(s)	167, 259, 306, 384, 480, 1309
BstMAI	GTCTC	5 cut(s)	458, 496, 2050, 2427, 3059
BstMBI	GATC	6 cut(s)	164, 256, 303, 381, 477, 1306
BstMCI	CGRYCG	1 cut(s)	276
BstNI	CCWGG	8 cut(s)	863, 874, 1106, 1392, 1729, 1844, 2234, 2691
BstNSI	RCATGY	4 cut(s)	1333, 1590, 1748, 2252
BstSCI	CCNGG	8 cut(s)	861, 872, 1104, 1390, 1727, 1842, 2232, 2689
BstSFI	CTRYAG	1 cut(s)	17
BstUI	CGCG	5 cut(s)	25, 181, 203, 227, 812
BstV2I	GAAGAC	1 cut(s)	364
BstX2I	RGATCY	2 cut(s)	164, 1306
BstXI	CCANNNNNNTGG	3 cut(s)	986, 1992, 2188
BstYI	RGATCY	2 cut(s)	164, 1306
BsuI	GTATCC	1 cut(s)	1545
BsuRI	GGCC	9 cut(s)	221, 297, 441, 599, 866, 1379, 1836, 2083, 2391
BtgI	CCRYGG	6 cut(s)	23, 676, 810, 2187, 2268, 2336
BtgZI	GCGATG	1 cut(s)	2047
BtrI	CACGTC	1 cut(s)	3031
BtsCI	GGATG	8 cut(s)	729, 800, 1238, 1326, 1528, 1650, 2425, 2786
BtsI	GCAGTG	4 cut(s)	1113, 1181, 1811, 2802
BtsIMutI	CAGTG	5 cut(s)	1113, 1181, 1811, 2669, 2802
BtuMI	TCGCGA	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	1739
Cac8I	GCNNGC	9 cut(s)	58, 192, 439, 540, 1198, 1213, 1327, 1917, 1955
CaiI	CAGNNNCTG	2 cut(s)	862, 1196
CciI	TCATGA	2 cut(s)	300, 930
CfoI	GCGC	9 cut(s)	62, 152, 205, 229, 242, 461, 552, 941, 1075
Cfr10I	RCCGGY	2 cut(s)	437, 2001
Cfr13I	GGNCC	3 cut(s)	411, 2389, 2870
Cfr42I	CCGCGG	2 cut(s)	26, 813
CseI	GACGC	2 cut(s)	329, 343
Csp6I	GTAC	8 cut(s)	40, 310, 673, 994, 2277, 2322, 2812, 3106
CspAI	ACCGGT	1 cut(s)	2001
CspCI	CAANNNNNGTGG	2 cut(s)	1548, 1583
CviQI	GTAC	8 cut(s)	40, 310, 673, 994, 2277, 2322, 2812, 3106
DdeI	CTNAG	7 cut(s)	378, 710, 897, 1930, 2220, 3058, 3112
DinI	GGCGCC	1 cut(s)	940
DpnI	GATC	6 cut(s)	166, 258, 305, 383, 479, 1308
DpnII	GATC	6 cut(s)	164, 256, 303, 381, 477, 1306
DrdI	GACNNNNNNGTC	1 cut(s)	2002
DseDI	GACNNNNNNGTC	1 cut(s)	2002
EaeI	YGGCCR	2 cut(s)	219, 2081
Eam1104I	CTCTTC	8 cut(s)	563, 770, 839, 1223, 1813, 1916, 2442, 2502
EarI	CTCTTC	8 cut(s)	563, 770, 839, 1223, 1813, 1916, 2442, 2502
EciI	GGCGGA	2 cut(s)	793, 999
Ecl136II	GAGCTC	1 cut(s)	1823
Eco130I	CCWWGG	5 cut(s)	292, 2187, 2268, 2336, 2437
Eco147I	AGGCCT	1 cut(s)	297
Eco24I	GRGCYC	2 cut(s)	883, 1825
Eco31I	GGTCTC	4 cut(s)	458, 496, 2427, 3059
Eco47I	GGWCC	2 cut(s)	411, 2870
Eco47III	AGCGCT	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	1823
Eco57I	CTGAAG	7 cut(s)	82, 124, 379, 586, 1081, 1173, 3056
Eco88I	CYCGRG	2 cut(s)	545, 719
EcoICRI	GAGCTC	1 cut(s)	1823
EcoNI	CCTNNNNNAGG	1 cut(s)	871
EcoRI	GAATTC	2 cut(s)	921, 1018
EcoRII	CCWGG	8 cut(s)	861, 872, 1104, 1390, 1727, 1842, 2232, 2689
EcoT14I	CCWWGG	5 cut(s)	292, 2187, 2268, 2336, 2437
EcoT22I	ATGCAT	1 cut(s)	1456
EcoT38I	GRGCYC	2 cut(s)	883, 1825
EgeI	GGCGCC	1 cut(s)	940
EheI	GGCGCC	1 cut(s)	940
ErhI	CCWWGG	5 cut(s)	292, 2187, 2268, 2336, 2437
Esp3I	CGTCTC	1 cut(s)	2050
FalI	AAGNNNNNCTT	4 cut(s)	1406, 1438, 1913, 1945
FaqI	GGGAC	6 cut(s)	218, 554, 1318, 1865, 2205, 2762
FauI	CCCGC	3 cut(s)	143, 199, 765
FauNDI	CATATG	1 cut(s)	2819
FokI	GGATG	8 cut(s)	716, 787, 1225, 1333, 1535, 1657, 2432, 2773
FriOI	GRGCYC	2 cut(s)	883, 1825
GlaI	GCGC	9 cut(s)	61, 151, 204, 228, 241, 460, 551, 940, 1074
GsaI	CCCAGC	2 cut(s)	1610, 2741
GsuI	CTGGAG	6 cut(s)	482, 1065, 1077, 1164, 2216, 2558
HaeII	RGCGCY	4 cut(s)	63, 153, 553, 942
HaeIII	GGCC	9 cut(s)	221, 297, 441, 599, 866, 1379, 1836, 2083, 2391
HapII	CCGG	6 cut(s)	11, 272, 339, 438, 2002, 2873
HgaI	GACGC	2 cut(s)	329, 343
HhaI	GCGC	9 cut(s)	62, 152, 205, 229, 242, 461, 552, 941, 1075
Hin1I	GRCGYC	4 cut(s)	321, 354, 939, 2043
Hin6I	GCGC	9 cut(s)	60, 150, 203, 227, 240, 459, 550, 939, 1073
HinP1I	GCGC	9 cut(s)	60, 150, 203, 227, 240, 459, 550, 939, 1073
HindIII	AAGCTT	1 cut(s)	2456
HpaII	CCGG	6 cut(s)	11, 272, 339, 438, 2002, 2873
HphI	GGTGA	2 cut(s)	1040, 2705
Hpy166II	GTNNAC	3 cut(s)	411, 2277, 2812
Hpy188I	TCNGA	8 cut(s)	381, 820, 906, 1090, 1160, 1831, 2008, 2600
Hpy8I	GTNNAC	3 cut(s)	411, 2277, 2812
Hpy99I	CGWCG	4 cut(s)	227, 281, 323, 406
HpyCH4III	ACNGT	5 cut(s)	1680, 2606, 2664, 2676, 3105
HpyCH4IV	ACGT	2 cut(s)	2043, 3030
HpyF3I	CTNAG	7 cut(s)	378, 710, 897, 1930, 2220, 3058, 3112
HpySE526I	ACGT	2 cut(s)	2043, 3030
Hsp92I	GRCGYC	4 cut(s)	321, 354, 939, 2043
HspAI	GCGC	9 cut(s)	60, 150, 203, 227, 240, 459, 550, 939, 1073
KasI	GGCGCC	1 cut(s)	938
Kpn2I	TCCGGA	1 cut(s)	2872
KroI	GCCGGC	1 cut(s)	437
KroNI	GCCGGC	1 cut(s)	439
KspI	CCGCGG	2 cut(s)	26, 813
Kzo9I	GATC	6 cut(s)	164, 256, 303, 381, 477, 1306
LguI	GCTCTTC	2 cut(s)	839, 1813
LweI	GCATC	4 cut(s)	738, 1081, 1710, 1916
MaeII	ACGT	2 cut(s)	2043, 3030
MalI	GATC	6 cut(s)	166, 258, 305, 383, 479, 1308
MboI	GATC	6 cut(s)	164, 256, 303, 381, 477, 1306
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	2 cut(s)	164, 1306
MhlI	GDGCHC	3 cut(s)	540, 883, 1825
MlsI	TGGCCA	1 cut(s)	2083
MluNI	TGGCCA	1 cut(s)	2083
Mly113I	GGCGCC	1 cut(s)	939
MlyI	GAGTC	3 cut(s)	125, 2713, 2969
MmeI	TCCRAC	2 cut(s)	114, 1138
Mox20I	TGGCCA	1 cut(s)	2083
Mph1103I	ATGCAT	1 cut(s)	1456
MroI	TCCGGA	1 cut(s)	2872
MroNI	GCCGGC	1 cut(s)	437
MroXI	GAANNNNTTC	1 cut(s)	1343
MscI	TGGCCA	1 cut(s)	2083
MseI	TTAA	5 cut(s)	1488, 2016, 2403, 2960, 3003
MslI	CAYNNNNRTG	5 cut(s)	1001, 1749, 2186, 2807, 2841
Msp20I	TGGCCA	1 cut(s)	2083
MspA1I	CMGCKG	7 cut(s)	25, 606, 812, 913, 1055, 1652, 2240
MspI	CCGG	6 cut(s)	11, 272, 339, 438, 2002, 2873
MspR9I	CCNGG	8 cut(s)	863, 874, 1106, 1392, 1729, 1844, 2234, 2691
MunI	CAATTG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	2409
MvaI	CCWGG	8 cut(s)	863, 874, 1106, 1392, 1729, 1844, 2234, 2691
MvnI	CGCG	5 cut(s)	25, 181, 203, 227, 812
NaeI	GCCGGC	1 cut(s)	439
NarI	GGCGCC	1 cut(s)	939
NcoI	CCATGG	3 cut(s)	2187, 2268, 2336
NdeI	CATATG	1 cut(s)	2819
NdeII	GATC	6 cut(s)	164, 256, 303, 381, 477, 1306
NgoMIV	GCCGGC	1 cut(s)	437
NlaIV	GGNNCC	9 cut(s)	109, 343, 690, 880, 940, 1005, 1066, 1268, 2695
NmeAIII	GCCGAG	2 cut(s)	240, 487
NmuCI	GTSAC	6 cut(s)	892, 1028, 1444, 1466, 1555, 2371
NruI	TCGCGA	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	1456
NspI	RCATGY	4 cut(s)	1333, 1590, 1748, 2252
NspV	TTCGAA	1 cut(s)	1412
OliI	CACNNNNGTG	1 cut(s)	2807
PaeR7I	CTCGAG	2 cut(s)	545, 719
PagI	TCATGA	2 cut(s)	300, 930
PaqCI	CACCTGC	1 cut(s)	1739
PceI	AGGCCT	1 cut(s)	297
PciI	ACATGT	1 cut(s)	1586
PciSI	GCTCTTC	2 cut(s)	839, 1813
PctI	GAATGC	1 cut(s)	2409
PdiI	GCCGGC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	1343
PfeI	GAWTC	8 cut(s)	183, 430, 511, 523, 665, 901, 2595, 2652
PflFI	GACNNNGTC	1 cut(s)	2604
PflMI	CCANNNNNTGG	1 cut(s)	862
PinAI	ACCGGT	1 cut(s)	2001
PleI	GAGTC	3 cut(s)	125, 2713, 2969
PluTI	GGCGCC	1 cut(s)	942
PpsI	GAGTC	3 cut(s)	125, 2713, 2969
PscI	ACATGT	1 cut(s)	1586
Psp124BI	GAGCTC	1 cut(s)	1825
Psp6I	CCWGG	8 cut(s)	861, 872, 1104, 1390, 1727, 1842, 2232, 2689
PspFI	CCCAGC	2 cut(s)	1606, 2737
PspGI	CCWGG	8 cut(s)	861, 872, 1104, 1390, 1727, 1842, 2232, 2689
PspN4I	GGNNCC	9 cut(s)	109, 343, 690, 880, 940, 1005, 1066, 1268, 2695
PspPI	GGNCC	3 cut(s)	411, 2389, 2870
PspXI	VCTCGAGB	1 cut(s)	545
PsrI	GAACNNNNNNTAC	2 cut(s)	734, 766
PstI	CTGCAG	1 cut(s)	21
PstNI	CAGNNNCTG	2 cut(s)	862, 1196
PsuI	RGATCY	2 cut(s)	164, 1306
PsyI	GACNNNGTC	1 cut(s)	2604
PvuII	CAGCTG	5 cut(s)	606, 913, 1055, 1652, 2240
RruI	TCGCGA	1 cut(s)	181
RsaI	GTAC	8 cut(s)	41, 311, 674, 995, 2278, 2323, 2813, 3107
RsaNI	GTAC	8 cut(s)	40, 310, 673, 994, 2277, 2322, 2812, 3106
RseI	CAYNNNNRTG	5 cut(s)	1001, 1749, 2186, 2807, 2841
SacI	GAGCTC	1 cut(s)	1825
SacII	CCGCGG	2 cut(s)	26, 813
SapI	GCTCTTC	2 cut(s)	839, 1813
SaqAI	TTAA	5 cut(s)	1488, 2016, 2403, 2960, 3003
Sau3AI	GATC	6 cut(s)	164, 256, 303, 381, 477, 1306
Sau96I	GGNCC	3 cut(s)	411, 2389, 2870
SchI	GAGTC	3 cut(s)	125, 2713, 2969
ScrFI	CCNGG	8 cut(s)	863, 874, 1106, 1392, 1729, 1844, 2234, 2691
SduI	GDGCHC	3 cut(s)	540, 883, 1825
SfaNI	GCATC	4 cut(s)	738, 1081, 1710, 1916
SfcI	CTRYAG	1 cut(s)	17
SfoI	GGCGCC	1 cut(s)	940
Sfr274I	CTCGAG	2 cut(s)	545, 719
Sfr303I	CCGCGG	2 cut(s)	26, 813
SfuI	TTCGAA	1 cut(s)	1412
SgrBI	CCGCGG	2 cut(s)	26, 813
SinI	GGWCC	2 cut(s)	411, 2870
SlaI	CTCGAG	2 cut(s)	545, 719
SmiMI	CAYNNNNRTG	5 cut(s)	1001, 1749, 2186, 2807, 2841
SmlI	CTYRAG	4 cut(s)	170, 545, 719, 2317
SmoI	CTYRAG	4 cut(s)	170, 545, 719, 2317
SpeI	ACTAGT	1 cut(s)	2353
SseBI	AGGCCT	1 cut(s)	297
SspDI	GGCGCC	1 cut(s)	938
SspI	AATATT	2 cut(s)	1315, 2683
SstI	GAGCTC	1 cut(s)	1825
StuI	AGGCCT	1 cut(s)	297
StyD4I	CCNGG	8 cut(s)	861, 872, 1104, 1390, 1727, 1842, 2232, 2689
StyI	CCWWGG	5 cut(s)	292, 2187, 2268, 2336, 2437
TaaI	ACNGT	5 cut(s)	1680, 2606, 2664, 2676, 3105
TaiI	ACGT	2 cut(s)	2046, 3033
TaqI	TCGA	7 cut(s)	255, 318, 519, 546, 720, 1412, 2722
TatI	WGTACW	2 cut(s)	2811, 3105
TfiI	GAWTC	8 cut(s)	183, 430, 511, 523, 665, 901, 2595, 2652
Tru1I	TTAA	5 cut(s)	1488, 2016, 2403, 2960, 3003
Tru9I	TTAA	5 cut(s)	1488, 2016, 2403, 2960, 3003
TscAI	CASTG	5 cut(s)	1120, 1188, 1811, 2669, 2809
TseFI	GTSAC	6 cut(s)	892, 1028, 1444, 1466, 1555, 2371
Tsp45I	GTSAC	6 cut(s)	892, 1028, 1444, 1466, 1555, 2371
TspDTI	ATGAA	8 cut(s)	829, 947, 972, 1614, 2050, 2512, 2565, 2644
TspGWI	ACGGA	2 cut(s)	23, 27
TspRI	CASTG	5 cut(s)	1120, 1188, 1811, 2669, 2809
Tth111I	GACNNNGTC	1 cut(s)	2604
Van91I	CCANNNNNTGG	1 cut(s)	862
VpaK11BI	GGWCC	2 cut(s)	411, 2870
XagI	CCTNNNNNAGG	1 cut(s)	871
XapI	RAATTY	4 cut(s)	700, 921, 1018, 2896
XbaI	TCTAGA	2 cut(s)	161, 3095
XceI	RCATGY	4 cut(s)	1333, 1590, 1748, 2252
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2076
XhoI	CTCGAG	2 cut(s)	545, 719
XmaJI	CCTAGG	2 cut(s)	292, 2437
XmnI	GAANNNNTTC	1 cut(s)	1343
ZraI	GACGTC	1 cut(s)	2044
Zsp2I	ATGCAT	1 cut(s)	1456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.