Rw4G015480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0009466
Physical Location & Seq
Reverse (-)
35592629 .. 35594852
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G015480.1

Sequence Viewer

Length: 828 bp
ATGCGCTGGTTCCTTCCACTGCCTTTAGTTACTGGCTTCTATTTGGCTCGCTTTTTTACAAAGAAGAGTGTTCCATCCTACTTTGCTTTTGTTGTGCTTGGGAGCCTGATGGTTACATGGTTTGTAATGCATAATTTCTGGGATCTAAATATTTGGATGACAGGCATGTCCCTGAAATCCTTCTGCAAACTTGTTATTTTGAATGTTGTCTTGGCCTTGACTATTCCTGGTCTAGCTCTACTTCCTTCGAAGCTCCACTTTTTGATAGAGATTGGTTTAGTCACTCAAGCATTGCTCTTATGTCACATTGAGAACTTATTTTTTAATTACTCTGGGATATATTATTATGGATTTGAGGATGATGTAATGTATCCAAGCTACATGGTTCTCGTGACAACATTTGTGGGTTTAGCTTTGGTGAGAAGACTATCTGCGGATCATAGAATTGGTGCAAAGGCAGTTTGGATTTTGACATGTCTTTATTCTGCAAAGATGGGTATGCTAGTGATTTCATCAAAGTTGGTTGTCTGGATGTCAGCTGTTCTGTTGTTGGCTGTAACGCCACCATTGCTTCTCTACAAGGATAAGTCAAGGACAACCTCAAAGATGCAAACCTGGCAAGGTTATACACACGCAGGTGTGGTTTCCTTATCAGTTTGGTTTTGTCGTGAAACAATCTTTGAAGCCTTGCAAAGGTGGAATGGAAGAGCCCCCTCTGATGGCCTACTCTTGGGCTTCTGTATTGTCTTGATGGGCTTGGCTTGTGTCCCTATTGTGGCTCTCCACTTCTCTCATGTCTTGCTTTCGATTTTCTCAATGGATACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

31.14

Weight (kDa)

9.23

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 626
AasI GACNNNNNNGTC 1 cut(s) 166
Acc36I ACCTGC 1 cut(s) 626
AciI CCGC 1 cut(s) 434
AclWI GGATC 2 cut(s) 150, 444
AfiI CCNNNNNNNGG 4 cut(s) 693, 719, 730, 775
AflIII ACRYGT 1 cut(s) 473
AgsI TTSAA 2 cut(s) 202, 683
AjnI CCWGG 2 cut(s) 226, 614
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AleI CACNNNNGTG 1 cut(s) 636
AluBI AGCT 5 cut(s) 236, 253, 378, 413, 539
AluI AGCT 5 cut(s) 236, 253, 378, 413, 539
AlwI GGATC 2 cut(s) 150, 444
AoxI GGCC 2 cut(s) 213, 721
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 430
AsuII TTCGAA 1 cut(s) 248
BanII GRGCYC 1 cut(s) 712
BauI CACGAG 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 430
BccI CCATC 5 cut(s) 82, 103, 487, 713, 745
BciT130I CCWGG 2 cut(s) 228, 616
BciVI GTATCC 2 cut(s) 381, 814
BfaI CTAG 2 cut(s) 233, 503
BfuAI ACCTGC 1 cut(s) 626
BfuI GTATCC 2 cut(s) 381, 814
Bme1390I CCNGG 2 cut(s) 228, 616
BmiI GGNNCC 2 cut(s) 11, 104
BmrFI CCNGG 2 cut(s) 228, 616
BmsI GCATC 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 430
Bpu14I TTCGAA 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 825
Bsc4I CCNNNNNNNGG 4 cut(s) 693, 719, 730, 775
Bse1I ACTGG 1 cut(s) 37
Bse3DI GCAATG 2 cut(s) 290, 566
BseBI CCWGG 2 cut(s) 228, 616
BseGI GGATG 4 cut(s) 74, 162, 364, 537
BseLI CCNNNNNNNGG 4 cut(s) 693, 719, 730, 775
BseMI GCAATG 2 cut(s) 290, 566
BseNI ACTGG 1 cut(s) 37
BshFI GGCC 2 cut(s) 215, 723
BslFI GGGAC 2 cut(s) 154, 752
BslI CCNNNNNNNGG 4 cut(s) 693, 719, 730, 775
BsmFI GGGAC 2 cut(s) 154, 752
BsnI GGCC 2 cut(s) 215, 723
Bsp119I TTCGAA 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 712
Bsp143I GATC 2 cut(s) 142, 436
BspACI CCGC 1 cut(s) 434
BspANI GGCC 2 cut(s) 215, 723
BspLI GGNNCC 2 cut(s) 11, 104
BspMI ACCTGC 1 cut(s) 626
BspPI GGATC 2 cut(s) 150, 444
BspQI GCTCTTC 1 cut(s) 700
BspT104I TTCGAA 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 290, 566
BsrI ACTGG 1 cut(s) 37
BssMI GATC 2 cut(s) 142, 436
BssSI CACGAG 1 cut(s) 389
Bst2BI CACGAG 1 cut(s) 389
Bst2UI CCWGG 2 cut(s) 228, 616
Bst6I CTCTTC 2 cut(s) 59, 700
BstBAI YACGTR 1 cut(s) 825
BstBI TTCGAA 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 49
BstENI CCTNNNNNAGG 1 cut(s) 691
BstF5I GGATG 4 cut(s) 74, 162, 364, 537
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 145, 439
BstMBI GATC 2 cut(s) 142, 436
BstMWI GCNNNNNNNGC 2 cut(s) 568, 616
BstNI CCWGG 2 cut(s) 228, 616
BstNSI RCATGY 2 cut(s) 169, 477
BstSCI CCNGG 2 cut(s) 226, 614
BstV2I GAAGAC 1 cut(s) 430
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuI GTATCC 2 cut(s) 381, 814
BsuRI GGCC 2 cut(s) 215, 723
BtsCI GGATG 4 cut(s) 74, 162, 364, 537
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 17
BveI ACCTGC 1 cut(s) 626
Cac8I GCNNGC 1 cut(s) 49
CfoI GCGC 1 cut(s) 6
CspCI CAANNNNNGTGG 2 cut(s) 384, 419
CviAII CATG 5 cut(s) 117, 166, 382, 474, 794
DpnI GATC 2 cut(s) 144, 438
DpnII GATC 2 cut(s) 142, 436
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
Eam1104I CTCTTC 2 cut(s) 59, 700
EarI CTCTTC 2 cut(s) 59, 700
Eco24I GRGCYC 1 cut(s) 712
EcoNI CCTNNNNNAGG 1 cut(s) 691
EcoRII CCWGG 2 cut(s) 226, 614
EcoT22I ATGCAT 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 712
FaeI CATG 5 cut(s) 120, 169, 385, 477, 797
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 2 cut(s) 154, 752
FatI CATG 5 cut(s) 116, 165, 381, 473, 793
FokI GGATG 4 cut(s) 61, 169, 371, 544
FriOI GRGCYC 1 cut(s) 712
FspBI CTAG 2 cut(s) 233, 503
GlaI GCGC 1 cut(s) 5
HaeIII GGCC 2 cut(s) 215, 723
HhaI GCGC 1 cut(s) 6
Hin1II CATG 5 cut(s) 120, 169, 385, 477, 797
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HphI GGTGA 1 cut(s) 430
Hpy188I TCNGA 1 cut(s) 718
Hpy188III TCNNGA 4 cut(s) 391, 529, 668, 748
HpyAV CCTTC 3 cut(s) 23, 190, 255
HpyCH4IV ACGT 1 cut(s) 824
HpyCH4V TGCA 6 cut(s) 130, 186, 452, 488, 610, 691
HpyF10VI GCNNNNNNNGC 2 cut(s) 568, 616
HpySE526I ACGT 1 cut(s) 824
Hsp92II CATG 5 cut(s) 120, 169, 385, 477, 797
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 142, 436
LguI GCTCTTC 1 cut(s) 700
LmnI GCTCC 2 cut(s) 102, 258
LweI GCATC 1 cut(s) 597
MaeI CTAG 2 cut(s) 233, 503
MaeII ACGT 1 cut(s) 824
MaeIII GTNAC 6 cut(s) 28, 112, 280, 302, 391, 556
MalI GATC 2 cut(s) 144, 438
MboI GATC 2 cut(s) 142, 436
MboII GAAGA 3 cut(s) 76, 435, 717
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 712
MluCI AATT 3 cut(s) 133, 325, 444
MnlI CCTC 3 cut(s) 349, 610, 724
Mph1103I ATGCAT 1 cut(s) 132
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 636
MspA1I CMGCKG 1 cut(s) 539
MspR9I CCNGG 2 cut(s) 228, 616
MvaI CCWGG 2 cut(s) 228, 616
MwoI GCNNNNNNNGC 2 cut(s) 568, 616
NdeII GATC 2 cut(s) 142, 436
NlaIII CATG 5 cut(s) 120, 169, 385, 477, 797
NlaIV GGNNCC 2 cut(s) 11, 104
NmuCI GTSAC 3 cut(s) 280, 302, 391
NsiI ATGCAT 1 cut(s) 132
NspI RCATGY 2 cut(s) 169, 477
NspV TTCGAA 1 cut(s) 248
OliI CACNNNNGTG 1 cut(s) 636
PaqCI CACCTGC 1 cut(s) 626
PciI ACATGT 1 cut(s) 473
PciSI GCTCTTC 1 cut(s) 700
PdmI GAANNNNTTC 1 cut(s) 179
Ppu21I YACGTR 1 cut(s) 825
PscI ACATGT 1 cut(s) 473
Psp6I CCWGG 2 cut(s) 226, 614
PspGI CCWGG 2 cut(s) 226, 614
PspN4I GGNNCC 2 cut(s) 11, 104
PsuI RGATCY 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 539
RseI CAYNNNNRTG 1 cut(s) 636
SapI GCTCTTC 1 cut(s) 700
SaqAI TTAA 1 cut(s) 324
Sau3AI GATC 2 cut(s) 142, 436
ScrFI CCNGG 2 cut(s) 228, 616
SduI GDGCHC 1 cut(s) 712
SfaNI GCATC 1 cut(s) 597
SfuI TTCGAA 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 636
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 3 cut(s) 133, 325, 444
SsiI CCGC 1 cut(s) 434
SspI AATATT 1 cut(s) 151
SspMI CTAG 2 cut(s) 233, 503
StyD4I CCNGG 2 cut(s) 226, 614
TaiI ACGT 1 cut(s) 827
TaqI TCGA 2 cut(s) 248, 806
TasI AATT 3 cut(s) 133, 325, 444
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 3 cut(s) 280, 302, 391
Tsp45I GTSAC 3 cut(s) 280, 302, 391
TspDTI ATGAA 1 cut(s) 501
TspRI CASTG 1 cut(s) 24
XagI CCTNNNNNAGG 1 cut(s) 691
XceI RCATGY 2 cut(s) 169, 477
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 2 cut(s) 233, 503
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.