Rorug04G0227300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009466
Physical Location & Seq
Forward (+)
39086159 .. 39087601
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0227300.1

Sequence Viewer

Length: 999 bp
ATGGCTACGATTGTATGTCAAGGTTTACAGTCGTGCCTACAGGAGCCACAGCTTGTAGAGCCAAGAACACTAAGGCTAAAACTCTCTTCGTCGATACCCCATCATCTTTTTTCAGCAACACCTTTAGAACTAGGCTTCAAATCTTTTCTTTCATCCGAGTCTAACCACATAAAAGAGCTTAGTCATGAAGAGAAATGCCACTATGACAAACCCGCCACCAAGAACTCTGACTTGGGTGGCTGGAGTTTCCTCCAATCTATCTCCAACAACAGTTCCCAACAACAAAACCCTCCAACCCCGGTTTATAATAAGCGGTCATCATCGGTTACTAGGCTGAATGAGAAGAGCTTGGAGCTGTGCACTGAAAACTTGGGCAATGAGACTGGCACCATCTTCATCGAAAACAGTATTTTCGAGTCGAATGATAAGAGCTTGGTGAAGAGGGATCAGCAGAAGCAGAGTAAAAGCTTGGGAAGCAAGAAATCCGCTAATGTTCATAATTTTCCTCCTCCACTAACCACGATAAGCGGCTTGGAGTCTCTACAAGTCAGACCACACAGGGAAGACGGTCGGCTAATACTCAAGGCTGTCAAGGCCCCATTGACACATAATTGTTTCCAAGCGGAGAGAAGCAATGGCCGCCTTCGGTTATGCTTTTCCAAAGACTTCTTTGCTCCTAACTTTGACTCCGAGTCACAAACCGCAGCCAATCAAGAAGACATTGAAGCAAACAGTGGTGAGGATAATGAAAATGAAGGATACGAAAATGATAGGGATGACGAACAAGAAGAACAAGAAGTGGGGGACATTGACAAAGTAGTTTTGGGAGAACAAGAAGGTCGAGTGTGTTTGGTTGAGGAGTTGGAAGAAAATAGTTTGAAAGTTGGGGGTGAAGAGGGAATGGACAAGTTCGGAAGGCCAAGCAGATGCAAAGAAGGTGGTGAGCATGAGAAGAAAGGACTGTTAAACTTTGAGCCTTTCAATTGGGTGGCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

37.18

Weight (kDa)

5.12

Isoelectric Point (pI)

60.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 167 - 219 1.4e-22 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 386
AciI CCGC 7 cut(s) 213, 313, 486, 528, 623, 640, 702
AclWI GGATC 1 cut(s) 453
AcoI YGGCCR 1 cut(s) 637
AgsI TTSAA 4 cut(s) 139, 725, 880, 982
AhdI GACNNNNNGTC 1 cut(s) 691
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 6 cut(s) 52, 178, 348, 355, 432, 468
AluI AGCT 6 cut(s) 52, 178, 348, 355, 432, 468
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 2 cut(s) 374, 543
Alw44I GTGCAC 1 cut(s) 358
AlwI GGATC 1 cut(s) 453
AoxI GGCC 3 cut(s) 594, 637, 917
ApaLI GTGCAC 1 cut(s) 358
ApeKI GCWGC 1 cut(s) 704
AspS9I GGNCC 1 cut(s) 595
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 4 cut(s) 448, 749, 902, 953
BaeGI GKGCMC 1 cut(s) 362
BanI GGYRCC 1 cut(s) 386
BbsI GAAGAC 2 cut(s) 570, 723
Bbv12I GWGCWC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 716
BccI CCATC 2 cut(s) 108, 398
BciVI GTATCC 1 cut(s) 752
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 374, 543
BfaI CTAG 2 cut(s) 131, 330
BfmI CTRYAG 1 cut(s) 38
BfuI GTATCC 1 cut(s) 752
BisI GCNGC 3 cut(s) 529, 640, 705
BlsI GCNGC 3 cut(s) 530, 641, 706
Bme1390I CCNGG 1 cut(s) 299
BmeRI GACNNNNNGTC 1 cut(s) 691
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 3 cut(s) 45, 388, 597
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 917
BpiI GAAGAC 2 cut(s) 570, 723
BpmI CTGGAG 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 566
BpuMI CCSGG 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bse1I ACTGG 1 cut(s) 388
Bse3DI GCAATG 2 cut(s) 382, 640
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 2 cut(s) 152, 781
BseMI GCAATG 2 cut(s) 382, 640
BseNI ACTGG 1 cut(s) 388
BseRI GAGGAG 2 cut(s) 498, 872
BseSI GKGCMC 1 cut(s) 362
BseXI GCAGC 1 cut(s) 716
Bsh1285I CGRYCG 1 cut(s) 571
BshFI GGCC 3 cut(s) 596, 639, 919
BshNI GGYRCC 1 cut(s) 386
BsiEI CGRYCG 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 362
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 818
BsmAI GTCTC 2 cut(s) 374, 543
BsmFI GGGAC 1 cut(s) 818
BsnI GGCC 3 cut(s) 596, 639, 919
Bsp1286I GDGCHC 1 cut(s) 362
Bsp143I GATC 1 cut(s) 445
BspACI CCGC 7 cut(s) 213, 313, 486, 528, 623, 640, 702
BspANI GGCC 3 cut(s) 596, 639, 919
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 45, 388, 597
BspPI GGATC 1 cut(s) 453
BspQI GCTCTTC 1 cut(s) 338
BspT107I GGYRCC 1 cut(s) 386
BsrDI GCAATG 2 cut(s) 382, 640
BsrI ACTGG 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 1 cut(s) 445
Bst4CI ACNGT 6 cut(s) 30, 272, 407, 569, 734, 963
Bst6I CTCTTC 5 cut(s) 91, 183, 338, 434, 888
BstDEI CTNAG 2 cut(s) 71, 179
BstF5I GGATG 2 cut(s) 152, 781
BstKTI GATC 1 cut(s) 448
BstMAI GTCTC 2 cut(s) 374, 543
BstMBI GATC 1 cut(s) 445
BstMCI CGRYCG 1 cut(s) 571
BstMWI GCNNNNNNNGC 4 cut(s) 58, 474, 593, 639
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 38
BstSLI GKGCMC 1 cut(s) 362
BstV1I GCAGC 1 cut(s) 716
BstV2I GAAGAC 2 cut(s) 570, 723
BsuI GTATCC 1 cut(s) 752
BsuRI GGCC 3 cut(s) 596, 639, 919
BtsCI GGATG 2 cut(s) 152, 781
BtsIMutI CAGTG 2 cut(s) 360, 739
CciI TCATGA 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 595
CspCI CAANNNNNGTGG 2 cut(s) 919, 954
CviAII CATG 2 cut(s) 185, 947
DdeI CTNAG 2 cut(s) 71, 179
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
DriI GACNNNNNGTC 1 cut(s) 691
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 5 cut(s) 91, 183, 338, 434, 888
Eam1105I GACNNNNNGTC 1 cut(s) 691
EarI CTCTTC 5 cut(s) 91, 183, 338, 434, 888
EcoO109I RGGNCCY 1 cut(s) 595
FaeI CATG 2 cut(s) 188, 950
FaiI YATR 9 cut(s) 16, 170, 186, 204, 306, 498, 609, 652, 948
FaqI GGGAC 1 cut(s) 818
FatI CATG 2 cut(s) 184, 946
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 529, 640, 705
FokI GGATG 2 cut(s) 139, 788
Fsp4HI GCNGC 3 cut(s) 529, 640, 705
FspBI CTAG 2 cut(s) 131, 330
GluI GCNGC 3 cut(s) 529, 640, 705
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 3 cut(s) 596, 639, 919
HapII CCGG 1 cut(s) 299
Hin1II CATG 2 cut(s) 188, 950
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 5 cut(s) 158, 416, 536, 686, 692
HpaII CCGG 1 cut(s) 299
HphI GGTGA 4 cut(s) 448, 749, 902, 953
Hpy166II GTNNAC 2 cut(s) 26, 360
Hpy188I TCNGA 5 cut(s) 157, 229, 551, 691, 914
Hpy188III TCNNGA 2 cut(s) 185, 713
Hpy8I GTNNAC 2 cut(s) 26, 360
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 5 cut(s) 653, 749, 830, 909, 929
HpyCH4III ACNGT 6 cut(s) 30, 272, 407, 569, 734, 963
HpyCH4V TGCA 2 cut(s) 360, 930
HpyF10VI GCNNNNNNNGC 4 cut(s) 58, 474, 593, 639
HpyF3I CTNAG 2 cut(s) 71, 179
Hsp92II CATG 2 cut(s) 188, 950
Kzo9I GATC 1 cut(s) 445
LguI GCTCTTC 1 cut(s) 338
LmnI GCTCC 3 cut(s) 43, 352, 679
LpnPI CCDG 5 cut(s) 26, 226, 312, 369, 544
Lsp1109I GCAGC 1 cut(s) 716
LweI GCATC 1 cut(s) 917
MaeI CTAG 2 cut(s) 131, 330
MaeIII GTNAC 2 cut(s) 325, 693
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MfeI CAATTG 1 cut(s) 982
MhlI GDGCHC 1 cut(s) 362
MluCI AATT 3 cut(s) 499, 610, 982
MlyI GAGTC 5 cut(s) 167, 425, 545, 680, 701
MmeI TCCRAC 3 cut(s) 288, 317, 843
MnlI CCTC 8 cut(s) 260, 300, 435, 516, 519, 733, 850, 889
MseI TTAA 1 cut(s) 965
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 299
MunI CAATTG 1 cut(s) 982
MwoI GCNNNNNNNGC 4 cut(s) 58, 474, 593, 639
NciI CCSGG 1 cut(s) 299
NdeII GATC 1 cut(s) 445
NlaIII CATG 2 cut(s) 188, 950
NlaIV GGNNCC 3 cut(s) 45, 388, 597
NmuCI GTSAC 1 cut(s) 693
PagI TCATGA 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 338
PkrI GCNGC 3 cut(s) 530, 641, 706
PleI GAGTC 5 cut(s) 166, 424, 544, 680, 700
PpsI GAGTC 5 cut(s) 166, 424, 544, 680, 700
PsiI TTATAA 1 cut(s) 306
PspN4I GGNNCC 3 cut(s) 45, 388, 597
PspPI GGNCC 1 cut(s) 595
SapI GCTCTTC 1 cut(s) 338
SaqAI TTAA 1 cut(s) 965
SatI GCNGC 3 cut(s) 529, 640, 705
Sau3AI GATC 1 cut(s) 445
Sau96I GGNCC 1 cut(s) 595
SchI GAGTC 5 cut(s) 167, 425, 545, 680, 701
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 1 cut(s) 362
SfaNI GCATC 1 cut(s) 917
SfcI CTRYAG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 3 cut(s) 499, 610, 982
SsiI CCGC 7 cut(s) 213, 313, 486, 528, 623, 640, 702
SspMI CTAG 2 cut(s) 131, 330
StyD4I CCNGG 1 cut(s) 297
TaaI ACNGT 6 cut(s) 30, 272, 407, 569, 734, 963
TaqI TCGA 5 cut(s) 92, 399, 414, 419, 841
TasI AATT 3 cut(s) 499, 610, 982
TauI GCSGC 2 cut(s) 531, 642
Tru1I TTAA 1 cut(s) 965
Tru9I TTAA 1 cut(s) 965
TscAI CASTG 2 cut(s) 367, 739
TseFI GTSAC 1 cut(s) 693
TseI GCWGC 1 cut(s) 704
Tsp45I GTSAC 1 cut(s) 693
TspDTI ATGAA 6 cut(s) 141, 201, 385, 485, 762, 768
TspRI CASTG 2 cut(s) 367, 739
VneI GTGCAC 1 cut(s) 358
XspI CTAG 2 cut(s) 131, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.