Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009466

Physical Location & Seq

Genomic Coordinates Forward (+)

52104510 .. 52109791

Gene Structure 5282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00370370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3039 bp

ATGGCCGTCGCGCTCGTCCCCTGCGCCGCCTTCCTCCTCGATCTCGGCGGCACTCCGGTCGTCGCGACCCTAACCCTAGGCATGATGATCTCCTACATCATCGACGCCCTCAACTTCAAGTCCGGTGCCTTCTTCGGCGTCTGGTTCTCCCTCGTCTTCTCTCAGATCGCCTTCTTCTTCAGCTCGTCGCTGTGGACCTCCTTCAATTCGTGGATTCTCGCCGGCCTCGCCGCCTTCCTCTGCGCCGAGACCAATTTCTTGATCGGCGTTTGGGTCTCCCTCCAGTTCAAGTGGATTCAAATCGAGAATCCTTCAATTGTGCTCGCCCTCGAGCGCCTCCTCTTCGCCTGTGTCCCCTTCGCCGCCGCCTCACTCTTCACTTGGGCCACCATCTCCGCCGTCGGTATGAGCAATGCCTCTTACTACCTCATGGCCTTCAGCTGCGTTTTCTATTGGCTCTACTCCATTCCTCGCATTTCGTCTTTCAAGACCAAGCAGGATTCCAAGTACCACGGCGGCGAGGTTCCCGATGAGAATTTGATACTCAGCCCCCTCGAGAGTTGCATCCACACTCTGTATCTGCTGTTCTTCCCGCTACTCTTCCACATCGCCTCTCACTACTCCATCATGTTCTCATCCGCCGCCGCGGTTTCCGATTTGTTCCTGCTCTTCTTCATTCCTTTCCTGTTCCAGCTCCTGGCCTCTACCAGGGGAGCCCTCTGGTGGGTCACTAAGAATCCGAACCAGCTGCGAGGAATTCAAGTCATGAATGGCGCCGTTGCTTTGGTTGTTGTTGTAATCTGTTTGGAGATTAGAGTCGTTTTCCATTCATTTGGGCGGTACATTCAGGTGCCTCCGCCTTTGAATTACCTTTTGGTGACTACTACAATGCTTGGAGGTGCAGCTGGAGCTGGTGCCTATGCGCTGGGTATGATATCTGATGCCTTCAGCTCCCTGGCTTTCACTGCTCTGGCTGTTGTAGTTAGTGCTGCTGGAGCTATTGTTGTCGGATTTCCTGTTTTGTTCCTTCCACTGCCTTCAGTTGCTGGCTTCTATTTGGCTCGCTTTTTTACAAAGAAGAGTGTTCCATCCTACTTTGCTTTTGTTGTGCTTGGGAGCCTGATGGTTACATGGTTTGTAATGCACAATTTCTGGGATCTAAATATTTGGATGGCAGGCATGTCCCTGAAATCCTTCTGCAAACTTGTTATTTTGAATGTTGTCTTGGCCTTGACTATTCCTGGTCTAGCTCTACTTCCTTCGAAGCTCCACTTTTTGACAGAGATTGGTTTAGTCACTCATGCATTGCTTTTATGTCACATTGAGAACCGATTTTTTAATTACTCTGGGATATATTATTATGGATTTGAGGATGATGTAATGTATCCAAGCTACATGGTTCTCGTGACAACATTTGTGGGTTTAGCTTTGGTGAGAAGGCTGTCTGCGGATCATCGAATTGGTGCGAAGGCAGTTTGGATTTTGACATGTCTTTATTCTGCAAAGCTGGGTATGCTAGTGATTTCATCAAAGTCGGTTGTCTGGATGTCAGCTGTTCTATTGTTGGCTGTAACGCCACCATTGCTTCTCTACAAAGCTCCCTCTGATGGCCTACTCCTGGGCTTCTGTATTGTCTTGATGGGCTTGGCTTGTGTCCCTATTGTGGCTCTCCACTTCTCTCATGTCTTGCCTGCGAAGAGATGCTTAGTGCTGGTGGTCGCTACTGGCTTGCTCTTTATCCTTTTGCAACCACCGATTCCAGTATCATGGACTTACCGGTCTGACCTAATTAAAGCTGCCCGTCAGTCTGTTGATGATGTCTCCATATACGGGTTCATCGCACCAAAGCCTATGTGGCCATCATGGCTGCTAATTGTGGCTATCCTGCTTACTCTAGCTGCTGTTACATCTGTTATACCAATCAAATACATGGTTGAGTTGAGAGTGTTTTATTCCATAGCCATGGGACTTGCTCTAGGTATCTACATATCTACTGAGTTCTTCCTCCAGGCAGCTGTCCTGCATGTCCTCATTGTTGTAACCATGGTGTGTACCTCTGTGTTTGTGGTTTTCACTCATTTCCCATCTGCCTCAAGTACGAAGCTGCTTCCATGGATATTTGCTTTACTAGTAGCTCTCTTTCCTGTGACATATCTTTTGGAGGGCCAAGTGAGAATTAAAAGCATTCTTGGGGATGGTGGATTTGGAGACCTGGGAGAAGAAGAGAGGAAGCTTACAACTCTATTTGCTGTTGAGGGGGCAAGGACATCTCTTCTTGGTCTTTATGCAGCAATTTTCATGCTAGTAGCTCTGGAGGTAAAGTATGAACTCGCCTCATTATTGAGGGAAAAAGCTACTGAAAGGAGTGGAATCAGACACAGTCTTTCTGGTCAAAGCACATCTACTAGCTTTCCTTCAAGAATGAGATTCATGCAACAGCGCCGGGCTTCTAGTATCTCATCCTTCACAATCAAGAAAATGACTGCTGAGGGAGCATGGATGCCAGCAGTTGGTAATGTTGCTACTGTGATGTGCTTTGCCATATGCATCATCTTAAATGTCAATCTCACAGGTGGCTCAAATCGTGCAATATTCTTCCTGGCACCGATTTTGCTGCTACTCAACCAGGACTCAGATTTTGTTGCTGGGTTTGGGGACAAGCAGAGATATTTCCCTGTTACAGTAGTTATATCATCCTACCTAGTCATCACTGCTGTGTACAGCATATGGGAAGAAATCTGGCATGGGAATGTAGGTTGGGGATTGGAAATCGGTGGTCCGGATTGGTTCTTTGCTGTGAAGAATTTGGCACTCCTTATTCTTACATTCCCGAGCCATATCCTTTTCAACAGGTACGTGTGGAGTTTAACAAAGCAGACAGACTCAACTCCATTGATAACTATGCCCCTTAATCTGCCATCTGTAATAATAACAGATGTGCTGAAGGTTAGGATATTAGGTCTCTTAGGAATTATTTATTCCCTAGCCCAGTATCTAGTATCTAGACAACAGTACATCTCAGGATTGAAGTATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1012

Amino Acids

111.61

Weight (kDa)

8.97

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13390 AT5G13390
fragaria_vesca	FvH4_4g22440
malus_domestica	MD13G1132200.v1.1 MD16G1142500.v1.1
prunus_persica	Prupe.1G213300_v2.0.a1
pyrus_communis	pycom13g11500 pycom16g11290
rosa_chinensis	RchiOBHm_Chr4g0402251 RchiOBHm_Chr4g0428701
rosa_laevigata	RLG00000007134
rosa_multiflora	Rmu_sc0003316.1_g000007
rosa_roxburghii	Rroxscaffold_5G00370370
rosa_rugosa	Rorug04G0227300
rosa_samantha	Rh4AG284500 Rh4BG290500 Rh4CG306700 Rh4DG288100 Rh5DG506600
rosa_wichuraiana	Rw0G020630 Rw4G015480 Rw4G024710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1777
AccB1I	GGYRCC	5 cut(s)	125, 773, 850, 914, 2602
AccB7I	CCANNNNNTGG	2 cut(s)	697, 2510
AccII	CGCG	3 cut(s)	11, 65, 647
AccIII	TCCGGA	1 cut(s)	2779
AclWI	GGATC	2 cut(s)	1164, 1458
AcoI	YGGCCR	2 cut(s)	3, 1856
AcsI	RAATTY	3 cut(s)	535, 756, 2803
AcuI	CTGAAG	5 cut(s)	163, 421, 931, 1023, 2963
AcyI	GRCGYC	3 cut(s)	105, 138, 774
AfaI	GTAC	7 cut(s)	509, 842, 2053, 2098, 2720, 2855, 3014
AfiI	CCNNNNNNNGG	9 cut(s)	697, 708, 723, 724, 1607, 1618, 1663, 1830, 2510
AflIII	ACRYGT	2 cut(s)	1487, 2856
AgeI	ACCGGT	1 cut(s)	1776
AhlI	ACTAGT	1 cut(s)	2128
AjnI	CCWGG	9 cut(s)	696, 707, 954, 1240, 1617, 2007, 2211, 2598, 2625
AjuI	GAANNNNNNNTTGG	4 cut(s)	857, 889, 1208, 1240
AleI	CACNNNNGTG	1 cut(s)	2714
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	5 cut(s)	242, 280, 1825, 2202, 2966
AlwI	GGATC	2 cut(s)	1164, 1458
AlwNI	CAGNNNCTG	2 cut(s)	697, 1046
Ama87I	CYCGRG	3 cut(s)	329, 554, 2830
Aor13HI	TCCGGA	1 cut(s)	2779
AoxI	GGCC	9 cut(s)	3, 223, 384, 432, 699, 1227, 1609, 1856, 2164
ApoI	RAATTY	3 cut(s)	535, 756, 2803
ArsI	GACNNNNNNTTYG	4 cut(s)	2140, 2172, 2621, 2653
AsiGI	ACCGGT	1 cut(s)	1776
Asp700I	GAANNNNTTC	1 cut(s)	1193
AspA2I	CCTAGG	1 cut(s)	76
AspLEI	GCGC	7 cut(s)	13, 26, 245, 336, 776, 925, 2442
AspS9I	GGNCC	4 cut(s)	195, 384, 2164, 2777
AsuC2I	CCSGG	1 cut(s)	2444
AsuHPI	GGTGA	2 cut(s)	889, 1444
AsuII	TTCGAA	1 cut(s)	1262
AvaI	CYCGRG	3 cut(s)	329, 554, 2830
AvaII	GGWCC	2 cut(s)	195, 2777
AvrII	CCTAGG	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	1858
BanI	GGYRCC	5 cut(s)	125, 773, 850, 914, 2602
BanII	GRGCYC	1 cut(s)	718
BauI	CACGAG	1 cut(s)	1403
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	324
BbvCI	CCTCAGC	1 cut(s)	2487
BceAI	ACGGC	3 cut(s)	383, 529, 761
BcgI	CGANNNNNNTGC	6 cut(s)	40, 74, 730, 764, 2596, 2630
BciT130I	CCWGG	9 cut(s)	698, 709, 956, 1242, 1619, 2009, 2213, 2600, 2627
BciVI	GTATCC	1 cut(s)	1395
BcnI	CCSGG	1 cut(s)	2444
BcoDI	GTCTC	5 cut(s)	242, 280, 1825, 2202, 2966
BcuI	ACTAGT	1 cut(s)	2128
BfoI	RGCGCY	3 cut(s)	337, 777, 2443
BfuI	GTATCC	1 cut(s)	1395
BglI	GCCNNNNNGGC	2 cut(s)	1855, 1864
BlnI	CCTAGG	1 cut(s)	76
Bme18I	GGWCC	2 cut(s)	195, 2777
BmeT110I	CYCGRG	3 cut(s)	329, 554, 2830
BmgT120I	GGNCC	4 cut(s)	195, 384, 2164, 2777
BmiI	GGNNCC	8 cut(s)	127, 525, 715, 775, 852, 916, 1118, 2604
BmrI	ACTGGG	1 cut(s)	2983
BmsI	GCATC	5 cut(s)	573, 931, 1691, 2490, 2556
BmuI	ACTGGG	1 cut(s)	2983
BpiI	GAAGAC	1 cut(s)	148
BpmI	CTGGAG	5 cut(s)	266, 927, 1014, 1991, 2333
Bpu10I	CCTNAGC	1 cut(s)	2487
Bpu14I	TTCGAA	1 cut(s)	1262
BpuEI	CTTGAG	1 cut(s)	2077
BpuMI	CCSGG	1 cut(s)	2444
BsaAI	YACGTR	1 cut(s)	2857
BsaBI	GATNNNNATC	1 cut(s)	299
BsaHI	GRCGYC	3 cut(s)	105, 138, 774
BsaI	GGTCTC	4 cut(s)	242, 280, 2202, 2966
BsaWI	WCCGGW	4 cut(s)	55, 122, 1776, 2779
BsaXI	ACNNNNNCTCC	4 cut(s)	987, 1017, 2306, 2336
Bsc4I	CCNNNNNNNGG	9 cut(s)	697, 708, 723, 724, 1607, 1618, 1663, 1830, 2510
Bse118I	RCCGGY	2 cut(s)	221, 1776
Bse1I	ACTGG	4 cut(s)	283, 1729, 1760, 2989
Bse3DI	GCAATG	3 cut(s)	418, 1304, 1580
Bse8I	GATNNNNATC	1 cut(s)	299
BseAI	TCCGGA	1 cut(s)	2779
BseBI	CCWGG	9 cut(s)	698, 709, 956, 1242, 1619, 2009, 2213, 2600, 2627
BseJI	GATNNNNATC	1 cut(s)	299
BseLI	CCNNNNNNNGG	9 cut(s)	697, 708, 723, 724, 1607, 1618, 1663, 1830, 2510
BseMI	GCAATG	3 cut(s)	418, 1304, 1580
BseMII	CTCAG	6 cut(s)	176, 559, 1986, 2478, 2646, 3033
BseNI	ACTGG	4 cut(s)	283, 1729, 1760, 2989
BseRI	GAGGAG	2 cut(s)	26, 329
BseYI	CCCAGC	3 cut(s)	925, 1507, 2645
BsgI	GTGCAG	1 cut(s)	921
Bsh1236I	CGCG	3 cut(s)	11, 65, 647
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	9 cut(s)	5, 225, 386, 434, 701, 1229, 1611, 1858, 2166
BshNI	GGYRCC	5 cut(s)	125, 773, 850, 914, 2602
BshTI	ACCGGT	1 cut(s)	1776
BsiEI	CGRYCG	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	3 cut(s)	329, 554, 2830
BsiSI	CCGG	6 cut(s)	56, 123, 222, 1777, 2443, 2780
BslFI	GGGAC	6 cut(s)	2, 338, 1168, 1640, 1980, 2669
BslI	CCNNNNNNNGG	9 cut(s)	697, 708, 723, 724, 1607, 1618, 1663, 1830, 2510
BsmAI	GTCTC	5 cut(s)	242, 280, 1825, 2202, 2966
BsmFI	GGGAC	6 cut(s)	2, 338, 1168, 1640, 1980, 2669
BsmI	GAATGC	1 cut(s)	2184
BsnI	GGCC	9 cut(s)	5, 225, 386, 434, 701, 1229, 1611, 1858, 2166
Bso31I	GGTCTC	4 cut(s)	242, 280, 2202, 2966
BsoBI	CYCGRG	3 cut(s)	329, 554, 2830
Bsp119I	TTCGAA	1 cut(s)	1262
Bsp1286I	GDGCHC	2 cut(s)	324, 718
Bsp13I	TCCGGA	1 cut(s)	2779
Bsp1407I	TGTACA	1 cut(s)	2718
Bsp143I	GATC	6 cut(s)	40, 87, 165, 261, 1156, 1450
Bsp19I	CCATGG	3 cut(s)	1962, 2043, 2111
Bsp68I	TCGCGA	1 cut(s)	65
BspANI	GGCC	9 cut(s)	5, 225, 386, 434, 701, 1229, 1611, 1858, 2166
BspCNI	CTCAG	6 cut(s)	175, 558, 1987, 2479, 2645, 3032
BspEI	TCCGGA	1 cut(s)	2779
BspFNI	CGCG	3 cut(s)	11, 65, 647
BspHI	TCATGA	1 cut(s)	765
BspLI	GGNNCC	8 cut(s)	127, 525, 715, 775, 852, 916, 1118, 2604
BspPI	GGATC	2 cut(s)	1164, 1458
BspQI	GCTCTTC	1 cut(s)	674
BspT104I	TTCGAA	1 cut(s)	1262
BspT107I	GGYRCC	5 cut(s)	125, 773, 850, 914, 2602
BspTNI	GGTCTC	4 cut(s)	242, 280, 2202, 2966
BsrDI	GCAATG	3 cut(s)	418, 1304, 1580
BsrFI	RCCGGY	2 cut(s)	221, 1776
BsrGI	TGTACA	1 cut(s)	2718
BsrI	ACTGG	4 cut(s)	283, 1729, 1760, 2989
BssAI	RCCGGY	2 cut(s)	221, 1776
BssMI	GATC	6 cut(s)	40, 87, 165, 261, 1156, 1450
BssNI	GRCGYC	3 cut(s)	105, 138, 774
BssSI	CACGAG	1 cut(s)	1403
BssT1I	CCWWGG	4 cut(s)	76, 1962, 2043, 2111
Bst2BI	CACGAG	1 cut(s)	1403
Bst2UI	CCWGG	9 cut(s)	698, 709, 956, 1242, 1619, 2009, 2213, 2600, 2627
Bst4CI	ACNGT	4 cut(s)	2381, 2527, 2683, 3012
Bst6I	CTCTTC	8 cut(s)	347, 380, 605, 674, 1073, 1691, 2217, 2277
BstACI	GRCGYC	3 cut(s)	105, 138, 774
BstAUI	TGTACA	1 cut(s)	2718
BstBAI	YACGTR	1 cut(s)	2857
BstBI	TTCGAA	1 cut(s)	1262
BstC8I	GCNNGC	8 cut(s)	223, 324, 1048, 1063, 1177, 1692, 1730, 2505
BstDEI	CTNAG	9 cut(s)	162, 545, 732, 1705, 1995, 2487, 2632, 2965, 3019
BstDSI	CCRYGG	5 cut(s)	511, 645, 1962, 2043, 2111
BstENI	CCTNNNNNAGG	1 cut(s)	706
BstFNI	CGCG	3 cut(s)	11, 65, 647
BstH2I	RGCGCY	3 cut(s)	337, 777, 2443
BstHHI	GCGC	7 cut(s)	13, 26, 245, 336, 776, 925, 2442
BstKTI	GATC	6 cut(s)	43, 90, 168, 264, 1159, 1453
BstMAI	GTCTC	5 cut(s)	242, 280, 1825, 2202, 2966
BstMBI	GATC	6 cut(s)	40, 87, 165, 261, 1156, 1450
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	9 cut(s)	227, 908, 965, 995, 1513, 1582, 1855, 1864, 2492
BstNI	CCWGG	9 cut(s)	698, 709, 956, 1242, 1619, 2009, 2213, 2600, 2627
BstNSI	RCATGY	3 cut(s)	1183, 1491, 2027
BstUI	CGCG	3 cut(s)	11, 65, 647
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	1156
BstXI	CCANNNNNNTGG	3 cut(s)	833, 1767, 1963
BstYI	RGATCY	1 cut(s)	1156
BsuI	GTATCC	1 cut(s)	1395
BsuRI	GGCC	9 cut(s)	5, 225, 386, 434, 701, 1229, 1611, 1858, 2166
BtgI	CCRYGG	5 cut(s)	511, 645, 1962, 2043, 2111
BtgZI	GCGATG	2 cut(s)	592, 1822
BtsI	GCAGTG	3 cut(s)	963, 1031, 2709
BtsIMutI	CAGTG	3 cut(s)	963, 1031, 2709
BtuMI	TCGCGA	1 cut(s)	65
Cac8I	GCNNGC	8 cut(s)	223, 324, 1048, 1063, 1177, 1692, 1730, 2505
CaiI	CAGNNNCTG	2 cut(s)	697, 1046
CciI	TCATGA	1 cut(s)	765
CfoI	GCGC	7 cut(s)	13, 26, 245, 336, 776, 925, 2442
Cfr10I	RCCGGY	2 cut(s)	221, 1776
Cfr13I	GGNCC	4 cut(s)	195, 384, 2164, 2777
Cfr42I	CCGCGG	1 cut(s)	648
CseI	GACGC	2 cut(s)	113, 127
Csp6I	GTAC	7 cut(s)	508, 841, 2052, 2097, 2719, 2854, 3013
CspAI	ACCGGT	1 cut(s)	1776
CspCI	CAANNNNNGTGG	2 cut(s)	1398, 1433
CviQI	GTAC	7 cut(s)	508, 841, 2052, 2097, 2719, 2854, 3013
DdeI	CTNAG	9 cut(s)	162, 545, 732, 1705, 1995, 2487, 2632, 2965, 3019
DinI	GGCGCC	1 cut(s)	775
DpnI	GATC	6 cut(s)	42, 89, 167, 263, 1158, 1452
DpnII	GATC	6 cut(s)	40, 87, 165, 261, 1156, 1450
DrdI	GACNNNNNNGTC	1 cut(s)	1777
DseDI	GACNNNNNNGTC	1 cut(s)	1777
EaeI	YGGCCR	2 cut(s)	3, 1856
Eam1104I	CTCTTC	8 cut(s)	347, 380, 605, 674, 1073, 1691, 2217, 2277
EarI	CTCTTC	8 cut(s)	347, 380, 605, 674, 1073, 1691, 2217, 2277
EciI	GGCGGA	3 cut(s)	385, 628, 846
Eco130I	CCWWGG	4 cut(s)	76, 1962, 2043, 2111
Eco24I	GRGCYC	1 cut(s)	718
Eco31I	GGTCTC	4 cut(s)	242, 280, 2202, 2966
Eco32I	GATATC	1 cut(s)	936
Eco47I	GGWCC	2 cut(s)	195, 2777
Eco57I	CTGAAG	5 cut(s)	163, 421, 931, 1023, 2963
Eco88I	CYCGRG	3 cut(s)	329, 554, 2830
EcoNI	CCTNNNNNAGG	1 cut(s)	706
EcoRI	GAATTC	1 cut(s)	756
EcoRII	CCWGG	9 cut(s)	696, 707, 954, 1240, 1617, 2007, 2211, 2598, 2625
EcoRV	GATATC	1 cut(s)	936
EcoT14I	CCWWGG	4 cut(s)	76, 1962, 2043, 2111
EcoT22I	ATGCAT	2 cut(s)	1306, 2549
EcoT38I	GRGCYC	1 cut(s)	718
EgeI	GGCGCC	1 cut(s)	775
EheI	GGCGCC	1 cut(s)	775
ErhI	CCWWGG	4 cut(s)	76, 1962, 2043, 2111
FalI	AAGNNNNNCTT	4 cut(s)	1256, 1288, 1688, 1720
FaqI	GGGAC	6 cut(s)	2, 338, 1168, 1640, 1980, 2669
FauI	CCCGC	1 cut(s)	600
FauNDI	CATATG	2 cut(s)	2543, 2726
FriOI	GRGCYC	1 cut(s)	718
GlaI	GCGC	7 cut(s)	12, 25, 244, 335, 775, 924, 2441
GsaI	CCCAGC	3 cut(s)	929, 1511, 2649
GsuI	CTGGAG	5 cut(s)	266, 927, 1014, 1991, 2333
HaeII	RGCGCY	3 cut(s)	337, 777, 2443
HaeIII	GGCC	9 cut(s)	5, 225, 386, 434, 701, 1229, 1611, 1858, 2166
HapII	CCGG	6 cut(s)	56, 123, 222, 1777, 2443, 2780
HgaI	GACGC	2 cut(s)	113, 127
HhaI	GCGC	7 cut(s)	13, 26, 245, 336, 776, 925, 2442
Hin1I	GRCGYC	3 cut(s)	105, 138, 774
Hin6I	GCGC	7 cut(s)	11, 24, 243, 334, 774, 923, 2440
HinP1I	GCGC	7 cut(s)	11, 24, 243, 334, 774, 923, 2440
HindIII	AAGCTT	1 cut(s)	2231
HpaII	CCGG	6 cut(s)	56, 123, 222, 1777, 2443, 2780
HphI	GGTGA	2 cut(s)	889, 1444
Hpy166II	GTNNAC	3 cut(s)	195, 2052, 2719
Hpy188I	TCNGA	9 cut(s)	165, 655, 741, 940, 1010, 1606, 1783, 2375, 2635
Hpy8I	GTNNAC	3 cut(s)	195, 2052, 2719
Hpy99I	CGWCG	5 cut(s)	11, 65, 107, 190, 404
HpyCH4III	ACNGT	4 cut(s)	2381, 2527, 2683, 3012
HpyCH4IV	ACGT	1 cut(s)	2856
HpyF10VI	GCNNNNNNNGC	9 cut(s)	227, 908, 965, 995, 1513, 1582, 1855, 1864, 2492
HpyF3I	CTNAG	9 cut(s)	162, 545, 732, 1705, 1995, 2487, 2632, 2965, 3019
HpySE526I	ACGT	1 cut(s)	2856
Hsp92I	GRCGYC	3 cut(s)	105, 138, 774
HspAI	GCGC	7 cut(s)	11, 24, 243, 334, 774, 923, 2440
KasI	GGCGCC	1 cut(s)	773
Kpn2I	TCCGGA	1 cut(s)	2779
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
KspI	CCGCGG	1 cut(s)	648
Kzo9I	GATC	6 cut(s)	40, 87, 165, 261, 1156, 1450
LguI	GCTCTTC	1 cut(s)	674
LmnI	GCTCC	9 cut(s)	699, 713, 908, 956, 995, 1116, 1272, 1603, 2492
LweI	GCATC	5 cut(s)	573, 931, 1691, 2490, 2556
MaeII	ACGT	1 cut(s)	2856
MalI	GATC	6 cut(s)	42, 89, 167, 263, 1158, 1452
MboI	GATC	6 cut(s)	40, 87, 165, 261, 1156, 1450
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	1 cut(s)	1156
MhlI	GDGCHC	2 cut(s)	324, 718
MlsI	TGGCCA	1 cut(s)	1858
MluNI	TGGCCA	1 cut(s)	1858
Mly113I	GGCGCC	1 cut(s)	774
MlyI	GAGTC	3 cut(s)	825, 2624, 2876
MmeI	TCCRAC	1 cut(s)	988
Mox20I	TGGCCA	1 cut(s)	1858
Mph1103I	ATGCAT	2 cut(s)	1306, 2549
MroI	TCCGGA	1 cut(s)	2779
MroNI	GCCGGC	1 cut(s)	221
MroXI	GAANNNNTTC	1 cut(s)	1193
MscI	TGGCCA	1 cut(s)	1858
MseI	TTAA	6 cut(s)	1338, 1791, 2178, 2555, 2867, 2910
MslI	CAYNNNNRTG	4 cut(s)	848, 1961, 2714, 2748
Msp20I	TGGCCA	1 cut(s)	1858
MspA1I	CMGCKG	6 cut(s)	441, 647, 748, 905, 1553, 2015
MspI	CCGG	6 cut(s)	56, 123, 222, 1777, 2443, 2780
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	2184
MvaI	CCWGG	9 cut(s)	698, 709, 956, 1242, 1619, 2009, 2213, 2600, 2627
MvnI	CGCG	3 cut(s)	11, 65, 647
MwoI	GCNNNNNNNGC	9 cut(s)	227, 908, 965, 995, 1513, 1582, 1855, 1864, 2492
NaeI	GCCGGC	1 cut(s)	223
NarI	GGCGCC	1 cut(s)	774
NciI	CCSGG	1 cut(s)	2444
NcoI	CCATGG	3 cut(s)	1962, 2043, 2111
NdeI	CATATG	2 cut(s)	2543, 2726
NdeII	GATC	6 cut(s)	40, 87, 165, 261, 1156, 1450
NgoMIV	GCCGGC	1 cut(s)	221
NlaIV	GGNNCC	8 cut(s)	127, 525, 715, 775, 852, 916, 1118, 2604
NmeAIII	GCCGAG	2 cut(s)	24, 271
NmuCI	GTSAC	6 cut(s)	727, 877, 1294, 1316, 1405, 2146
NruI	TCGCGA	1 cut(s)	65
NsiI	ATGCAT	2 cut(s)	1306, 2549
NspI	RCATGY	3 cut(s)	1183, 1491, 2027
NspV	TTCGAA	1 cut(s)	1262
OliI	CACNNNNGTG	1 cut(s)	2714
PaeR7I	CTCGAG	2 cut(s)	329, 554
PagI	TCATGA	1 cut(s)	765
PciI	ACATGT	1 cut(s)	1487
PciSI	GCTCTTC	1 cut(s)	674
PctI	GAATGC	1 cut(s)	2184
PdiI	GCCGGC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	1193
PfeI	GAWTC	8 cut(s)	214, 295, 307, 500, 736, 1756, 2370, 2427
PflFI	GACNNNGTC	1 cut(s)	2379
PflMI	CCANNNNNTGG	2 cut(s)	697, 2510
PinAI	ACCGGT	1 cut(s)	1776
PleI	GAGTC	3 cut(s)	824, 2624, 2876
PluTI	GGCGCC	1 cut(s)	777
PpsI	GAGTC	3 cut(s)	824, 2624, 2876
Ppu21I	YACGTR	1 cut(s)	2857
PscI	ACATGT	1 cut(s)	1487
Psp6I	CCWGG	9 cut(s)	696, 707, 954, 1240, 1617, 2007, 2211, 2598, 2625
PspFI	CCCAGC	3 cut(s)	925, 1507, 2645
PspGI	CCWGG	9 cut(s)	696, 707, 954, 1240, 1617, 2007, 2211, 2598, 2625
PspN4I	GGNNCC	8 cut(s)	127, 525, 715, 775, 852, 916, 1118, 2604
PspPI	GGNCC	4 cut(s)	195, 384, 2164, 2777
PspXI	VCTCGAGB	1 cut(s)	329
PsrI	GAACNNNNNNTAC	2 cut(s)	569, 601
PstNI	CAGNNNCTG	2 cut(s)	697, 1046
PsuI	RGATCY	1 cut(s)	1156
PsyI	GACNNNGTC	1 cut(s)	2379
PvuII	CAGCTG	5 cut(s)	441, 748, 905, 1553, 2015
RruI	TCGCGA	1 cut(s)	65
RsaI	GTAC	7 cut(s)	509, 842, 2053, 2098, 2720, 2855, 3014
RsaNI	GTAC	7 cut(s)	508, 841, 2052, 2097, 2719, 2854, 3013
RseI	CAYNNNNRTG	4 cut(s)	848, 1961, 2714, 2748
SacII	CCGCGG	1 cut(s)	648
SapI	GCTCTTC	1 cut(s)	674
SaqAI	TTAA	6 cut(s)	1338, 1791, 2178, 2555, 2867, 2910
Sau3AI	GATC	6 cut(s)	40, 87, 165, 261, 1156, 1450
Sau96I	GGNCC	4 cut(s)	195, 384, 2164, 2777
SchI	GAGTC	3 cut(s)	825, 2624, 2876
SduI	GDGCHC	2 cut(s)	324, 718
SfaNI	GCATC	5 cut(s)	573, 931, 1691, 2490, 2556
SfoI	GGCGCC	1 cut(s)	775
Sfr274I	CTCGAG	2 cut(s)	329, 554
Sfr303I	CCGCGG	1 cut(s)	648
SfuI	TTCGAA	1 cut(s)	1262
SgrBI	CCGCGG	1 cut(s)	648
SinI	GGWCC	2 cut(s)	195, 2777
SlaI	CTCGAG	2 cut(s)	329, 554
SmiMI	CAYNNNNRTG	4 cut(s)	848, 1961, 2714, 2748
SmlI	CTYRAG	3 cut(s)	329, 554, 2092
SmoI	CTYRAG	3 cut(s)	329, 554, 2092
SpeI	ACTAGT	1 cut(s)	2128
SspDI	GGCGCC	1 cut(s)	773
SspI	AATATT	2 cut(s)	1165, 2592
StyI	CCWWGG	4 cut(s)	76, 1962, 2043, 2111
TaaI	ACNGT	4 cut(s)	2381, 2527, 2683, 3012
TaiI	ACGT	1 cut(s)	2859
TaqI	TCGA	7 cut(s)	39, 102, 303, 330, 555, 1262, 1456
TatI	WGTACW	2 cut(s)	2718, 3012
TauI	GCSGC	8 cut(s)	29, 51, 233, 365, 368, 519, 644, 647
TfiI	GAWTC	8 cut(s)	214, 295, 307, 500, 736, 1756, 2370, 2427
Tru1I	TTAA	6 cut(s)	1338, 1791, 2178, 2555, 2867, 2910
Tru9I	TTAA	6 cut(s)	1338, 1791, 2178, 2555, 2867, 2910
TscAI	CASTG	3 cut(s)	970, 1038, 2716
TseFI	GTSAC	6 cut(s)	727, 877, 1294, 1316, 1405, 2146
Tsp45I	GTSAC	6 cut(s)	727, 877, 1294, 1316, 1405, 2146
TspDTI	ATGAA	8 cut(s)	664, 782, 819, 1515, 1825, 2287, 2340, 2419
TspRI	CASTG	3 cut(s)	970, 1038, 2716
Tth111I	GACNNNGTC	1 cut(s)	2379
Van91I	CCANNNNNTGG	2 cut(s)	697, 2510
VpaK11BI	GGWCC	2 cut(s)	195, 2777
XagI	CCTNNNNNAGG	1 cut(s)	706
XapI	RAATTY	3 cut(s)	535, 756, 2803
XbaI	TCTAGA	1 cut(s)	3002
XceI	RCATGY	3 cut(s)	1183, 1491, 2027
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1851
XhoI	CTCGAG	2 cut(s)	329, 554
XmaJI	CCTAGG	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	1193
Zsp2I	ATGCAT	2 cut(s)	1306, 2549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.