Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009406

Physical Location & Seq

Genomic Coordinates Reverse (-)

4631891 .. 4633925

Gene Structure 2035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G14370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTGTAGCAACAAAGCAAGTCCGGTCGTCGGAGAAGAAAAACAGAGTACGAGATCATCGAAGAGGATCAAGAAGAGAAAAAACAGAGAAGCTACCACCACCATGGAGGATAAGTCTTCTTCCAATCTTGACGCGTCTCGTAAGATCAGAACAAAAACGAAAAAACCCAAATTTCTCAGTCTCAAGCTCGAGCTCAACACTTCTCACGAGATCAACGAGAATCCCAGAAGCAAGAAGAGCAAGAAGAAGAACAACAACAAAAAACAGAGCAAGAAGAAAGAACCGGATACGACGCCGTTTAAGGAGAAGAAGAGAGCAGAGACTACTACTACACTGGGGGGAGGAGAGAAAGAAGAAGAGCAATACGACACCGTTGCAGCTTACCTCTTCAATTCCGCCACCGACAGTACAATTTCTTCGATCCACGATCTCCTCCCTTCCTCCGCGGCCACCGATGTAGATTGCGGCGGAGAAAGGAATAATCTTTCTCCGTATGATCGTCAAGACCACGGATCGTCGTCGTCTTCCCTTCTAAGGACGGCGATGAGGAAAGGAGCGAGCGAGGAGGAGGAGACGACGGAGGAGCGGTGGGTGAGTTATTCAGAGGTTGTGGAGGAAGTGATGAGTCGGAGCGGGACTCCACGTTGTTGCGGCGGAGGCGATGGAAACGATGGCCGGCCTTCGTTGGCTCTGAAGCTTGATTATGAGCAGATCATGGAGGCTTGGTCGGATAAAGGTACGCTTTATGTCGACGGAGAACCGCCGCAGACAGTGCCGGACTTGCATGCTTCCGCTGATGGGTTTAATGACGGCGGAGAGGCGGGGAATTTATGGGCAGTGCCGGAGATGGAAACGACGGAGAGGTTATGGAGAGGGCATAGAGAAGCCAGCTTGCTCCGGTATAAAGAGAAACGGCAAAACCGTCTTTTCTCTAAGCGGATTCGATATCAAGTTCGTAAACTCAATGCCGAGAAACGTCCTCGTGTTAAAGGCCGGTTTGTAAAAAGAGAGGATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

339

Amino Acids

38.28

Weight (kDa)

9.35

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	294 - 336	4.6e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14370
fragaria_vesca	FvH4_6g52200 FvH4_6g52200 FvH4_6g52200
malus_domestica	MD09G1019800.v1.1 MD17G1020400.v1.1
prunus_persica	Prupe.3G296700_v2.0.a1
pyrus_communis	pycom111g01640 pycom17g01700
rosa_chinensis	RchiOBHm_Chr2g0173701
rosa_laevigata	RLG00000022215
rosa_multiflora	Rmu_co8469107.1_g000001 Rmu_sc0002538.1_g000006
rosa_roxburghii	Rroxscaffold_2G00078670 Rroxscaffold_2G00078690
rosa_rugosa	Rorug02G0572400
rosa_samantha	Rh2AG651300 Rh2BG661800 Rh2CG626700 Rh2CG626800 Rh2DG677000
rosa_wichuraiana	Rw2G053450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	586, 633
AccI	GTMKAC	1 cut(s)	750
AccII	CGCG	2 cut(s)	134, 446
AclWI	GGATC	3 cut(s)	74, 415, 520
AcoI	YGGCCR	2 cut(s)	447, 673
AcsI	RAATTY	2 cut(s)	170, 826
AcuI	CTGAAG	1 cut(s)	713
AcyI	GRCGYC	1 cut(s)	293
AfaI	GTAC	3 cut(s)	49, 409, 739
AfiI	CCNNNNNNNGG	3 cut(s)	29, 534, 798
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	391
AluBI	AGCT	6 cut(s)	92, 187, 193, 380, 697, 891
AluI	AGCT	6 cut(s)	92, 187, 193, 380, 697, 891
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	4 cut(s)	141, 185, 314, 566
AlwI	GGATC	3 cut(s)	74, 415, 520
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	4 cut(s)	447, 673, 677, 991
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	2 cut(s)	170, 826
AsuHPI	GGTGA	1 cut(s)	604
AvaI	CYCGRG	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	400, 432
BauI	CACGAG	2 cut(s)	206, 981
BbsI	GAAGAC	2 cut(s)	108, 516
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	4 cut(s)	656, 665, 791, 841
BceAI	ACGGC	4 cut(s)	280, 555, 826, 929
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciVI	GTATCC	1 cut(s)	280
BcoDI	GTCTC	4 cut(s)	141, 185, 314, 566
BfuI	GTATCC	1 cut(s)	280
BisI	GCNGC	5 cut(s)	378, 447, 466, 652, 764
BlsI	GCNGC	5 cut(s)	379, 448, 467, 653, 765
BmeT110I	CYCGRG	1 cut(s)	188
BmrI	ACTGGG	1 cut(s)	344
BmuI	ACTGGG	1 cut(s)	344
BpiI	GAAGAC	2 cut(s)	108, 516
BplI	GAGNNNNNCTC	2 cut(s)	622, 654
BpuEI	CTTGAG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	293
BsaJI	CCNNGG	3 cut(s)	102, 444, 508
BsaWI	WCCGGW	3 cut(s)	22, 283, 897
BsaXI	ACNNNNNCTCC	6 cut(s)	98, 128, 572, 602, 710, 740
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 534, 798
Bse118I	RCCGGY	2 cut(s)	675, 993
Bse1I	ACTGG	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	102, 444, 508
BseLI	CCNNNNNNNGG	3 cut(s)	29, 534, 798
BseMII	CTCAG	1 cut(s)	190
BseNI	ACTGG	1 cut(s)	339
BseRI	GAGGAG	6 cut(s)	357, 422, 578, 581, 584, 596
BseXI	GCAGC	1 cut(s)	389
Bsh1236I	CGCG	2 cut(s)	134, 446
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	4 cut(s)	449, 675, 679, 993
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	7 cut(s)	23, 284, 676, 776, 842, 898, 994
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	3 cut(s)	29, 534, 798
BsmAI	GTCTC	4 cut(s)	141, 185, 314, 566
BsmBI	CGTCTC	2 cut(s)	141, 566
BsmFI	GGGAC	1 cut(s)	649
BsnI	GGCC	4 cut(s)	449, 675, 679, 993
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	9 cut(s)	53, 66, 144, 210, 420, 427, 496, 512, 711
Bsp19I	CCATGG	1 cut(s)	102
BspANI	GGCC	4 cut(s)	449, 675, 679, 993
BspCNI	CTCAG	1 cut(s)	189
BspFNI	CGCG	2 cut(s)	134, 446
BspPI	GGATC	3 cut(s)	74, 415, 520
BspQI	GCTCTTC	2 cut(s)	230, 351
BsrBI	CCGCTC	2 cut(s)	586, 633
BsrFI	RCCGGY	2 cut(s)	675, 993
BsrI	ACTGG	1 cut(s)	339
BssAI	RCCGGY	2 cut(s)	675, 993
BssECI	CCNNGG	3 cut(s)	102, 444, 508
BssMI	GATC	9 cut(s)	53, 66, 144, 210, 420, 427, 496, 512, 711
BssNI	GRCGYC	1 cut(s)	293
BssSI	CACGAG	2 cut(s)	206, 981
BssT1I	CCWWGG	1 cut(s)	102
Bst2BI	CACGAG	2 cut(s)	206, 981
Bst4CI	ACNGT	4 cut(s)	373, 407, 772, 923
Bst6I	CTCTTC	6 cut(s)	56, 68, 230, 305, 351, 392
BstACI	GRCGYC	1 cut(s)	293
BstAPI	GCANNNNNTGC	1 cut(s)	772
BstC8I	GCNNGC	5 cut(s)	559, 677, 786, 889, 893
BstDEI	CTNAG	3 cut(s)	176, 533, 933
BstDSI	CCRYGG	3 cut(s)	102, 444, 508
BstFNI	CGCG	2 cut(s)	134, 446
BstKTI	GATC	9 cut(s)	56, 69, 147, 213, 423, 430, 499, 515, 714
BstMAI	GTCTC	4 cut(s)	141, 185, 314, 566
BstMBI	GATC	9 cut(s)	53, 66, 144, 210, 420, 427, 496, 512, 711
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	4 cut(s)	237, 657, 772, 781
BstNSI	RCATGY	1 cut(s)	788
BstUI	CGCG	2 cut(s)	134, 446
BstV1I	GCAGC	1 cut(s)	389
BstV2I	GAAGAC	2 cut(s)	108, 516
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	280
BsuRI	GGCC	4 cut(s)	449, 675, 679, 993
BtgI	CCRYGG	3 cut(s)	102, 444, 508
BtgZI	GCGATG	2 cut(s)	557, 675
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	3 cut(s)	332, 777, 843
Cac8I	GCNNGC	5 cut(s)	559, 677, 786, 889, 893
Cfr10I	RCCGGY	2 cut(s)	675, 993
Cfr42I	CCGCGG	1 cut(s)	447
CseI	GACGC	3 cut(s)	123, 140, 301
Csp6I	GTAC	3 cut(s)	48, 408, 738
CviAII	CATG	3 cut(s)	103, 715, 785
CviQI	GTAC	3 cut(s)	48, 408, 738
DdeI	CTNAG	3 cut(s)	176, 533, 933
DpnI	GATC	9 cut(s)	55, 68, 146, 212, 422, 429, 498, 514, 713
DpnII	GATC	9 cut(s)	53, 66, 144, 210, 420, 427, 496, 512, 711
EaeI	YGGCCR	2 cut(s)	447, 673
Eam1104I	CTCTTC	6 cut(s)	56, 68, 230, 305, 351, 392
EarI	CTCTTC	6 cut(s)	56, 68, 230, 305, 351, 392
EciI	GGCGGA	4 cut(s)	385, 483, 669, 828
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	195
Eco32I	GATATC	1 cut(s)	947
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	713
Eco88I	CYCGRG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	193
EcoRV	GATATC	1 cut(s)	947
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	102
Esp3I	CGTCTC	2 cut(s)	141, 566
FaeI	CATG	3 cut(s)	106, 718, 788
FalI	AAGNNNNNCTT	2 cut(s)	726, 758
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	3 cut(s)	102, 714, 784
FauI	CCCGC	2 cut(s)	626, 814
FblI	GTMKAC	1 cut(s)	750
Fnu4HI	GCNGC	5 cut(s)	378, 447, 466, 652, 764
FriOI	GRGCYC	1 cut(s)	195
FseI	GGCCGGCC	1 cut(s)	679
Fsp4HI	GCNGC	5 cut(s)	378, 447, 466, 652, 764
GluI	GCNGC	5 cut(s)	378, 447, 466, 652, 764
HaeIII	GGCC	4 cut(s)	449, 675, 679, 993
HapII	CCGG	7 cut(s)	23, 284, 676, 776, 842, 898, 994
HgaI	GACGC	3 cut(s)	123, 140, 301
Hin1I	GRCGYC	1 cut(s)	293
Hin1II	CATG	3 cut(s)	106, 718, 788
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	5 cut(s)	220, 625, 637, 940, 1013
HpaII	CCGG	7 cut(s)	23, 284, 676, 776, 842, 898, 994
HphI	GGTGA	1 cut(s)	604
Hpy166II	GTNNAC	2 cut(s)	751, 959
Hpy188I	TCNGA	6 cut(s)	32, 149, 604, 630, 693, 730
Hpy188III	TCNNGA	4 cut(s)	70, 128, 206, 503
Hpy8I	GTNNAC	2 cut(s)	751, 959
Hpy99I	CGWCG	7 cut(s)	32, 295, 520, 523, 580, 755, 859
HpyAV	CCTTC	3 cut(s)	447, 539, 690
HpyCH4III	ACNGT	4 cut(s)	373, 407, 772, 923
HpyCH4IV	ACGT	2 cut(s)	643, 976
HpyCH4V	TGCA	2 cut(s)	377, 784
HpyF10VI	GCNNNNNNNGC	4 cut(s)	237, 657, 772, 781
HpyF3I	CTNAG	3 cut(s)	176, 533, 933
HpySE526I	ACGT	2 cut(s)	643, 976
Hsp92I	GRCGYC	1 cut(s)	293
Hsp92II	CATG	3 cut(s)	106, 718, 788
KroI	GCCGGC	1 cut(s)	675
KroNI	GCCGGC	1 cut(s)	677
KspI	CCGCGG	1 cut(s)	447
Kzo9I	GATC	9 cut(s)	53, 66, 144, 210, 420, 427, 496, 512, 711
LguI	GCTCTTC	2 cut(s)	230, 351
LmnI	GCTCC	4 cut(s)	554, 583, 630, 900
Lsp1109I	GCAGC	1 cut(s)	389
MaeII	ACGT	2 cut(s)	643, 976
MalI	GATC	9 cut(s)	55, 68, 146, 212, 422, 429, 498, 514, 713
MbiI	CCGCTC	2 cut(s)	586, 633
MboI	GATC	9 cut(s)	53, 66, 144, 210, 420, 427, 496, 512, 711
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	4 cut(s)	170, 391, 411, 826
MluI	ACGCGT	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	631, 634
MmeI	TCCRAC	3 cut(s)	10, 608, 708
MroNI	GCCGGC	1 cut(s)	675
MseI	TTAA	3 cut(s)	300, 804, 987
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	2 cut(s)	446, 794
MspI	CCGG	7 cut(s)	23, 284, 676, 776, 842, 898, 994
MvnI	CGCG	2 cut(s)	134, 446
MwoI	GCNNNNNNNGC	4 cut(s)	237, 657, 772, 781
NaeI	GCCGGC	1 cut(s)	677
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	9 cut(s)	53, 66, 144, 210, 420, 427, 496, 512, 711
NgoMIV	GCCGGC	1 cut(s)	675
NlaIII	CATG	3 cut(s)	106, 718, 788
NmeAIII	GCCGAG	1 cut(s)	994
NspI	RCATGY	1 cut(s)	788
PaeI	GCATGC	1 cut(s)	788
PaeR7I	CTCGAG	1 cut(s)	188
PciSI	GCTCTTC	2 cut(s)	230, 351
PcsI	WCGNNNNNNNCGW	3 cut(s)	56, 213, 919
PdiI	GCCGGC	1 cut(s)	677
PfeI	GAWTC	3 cut(s)	220, 940, 1013
PkrI	GCNGC	5 cut(s)	379, 448, 467, 653, 765
PleI	GAGTC	2 cut(s)	631, 633
PpsI	GAGTC	2 cut(s)	631, 633
Psp124BI	GAGCTC	1 cut(s)	195
PspXI	VCTCGAGB	1 cut(s)	188
RigI	GGCCGGCC	1 cut(s)	679
RsaI	GTAC	3 cut(s)	49, 409, 739
RsaNI	GTAC	3 cut(s)	48, 408, 738
RseI	CAYNNNNRTG	1 cut(s)	101
SacI	GAGCTC	1 cut(s)	195
SacII	CCGCGG	1 cut(s)	447
SalI	GTCGAC	1 cut(s)	749
SapI	GCTCTTC	2 cut(s)	230, 351
SaqAI	TTAA	3 cut(s)	300, 804, 987
SatI	GCNGC	5 cut(s)	378, 447, 466, 652, 764
Sau3AI	GATC	9 cut(s)	53, 66, 144, 210, 420, 427, 496, 512, 711
SchI	GAGTC	2 cut(s)	631, 634
SduI	GDGCHC	1 cut(s)	195
Sfr274I	CTCGAG	1 cut(s)	188
Sfr303I	CCGCGG	1 cut(s)	447
SgrBI	CCGCGG	1 cut(s)	447
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	182, 188
SmoI	CTYRAG	2 cut(s)	182, 188
SphI	GCATGC	1 cut(s)	788
Sse9I	AATT	4 cut(s)	170, 391, 411, 826
SstI	GAGCTC	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	4 cut(s)	373, 407, 772, 923
TaiI	ACGT	2 cut(s)	646, 979
TaqI	TCGA	5 cut(s)	59, 189, 419, 750, 943
TasI	AATT	4 cut(s)	170, 391, 411, 826
TatI	WGTACW	1 cut(s)	407
TauI	GCSGC	4 cut(s)	449, 468, 654, 766
TfiI	GAWTC	3 cut(s)	220, 940, 1013
Tru1I	TTAA	3 cut(s)	300, 804, 987
Tru9I	TTAA	3 cut(s)	300, 804, 987
TscAI	CASTG	3 cut(s)	339, 777, 843
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	1005
TspGWI	ACGGA	5 cut(s)	480, 525, 593, 768, 872
TspRI	CASTG	3 cut(s)	339, 777, 843
XapI	RAATTY	2 cut(s)	170, 826
XceI	RCATGY	1 cut(s)	788
XhoI	CTCGAG	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.