Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009406

Physical Location & Seq

Genomic Coordinates Forward (+)

87663062 .. 87664530

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG661800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTGCCACCACAACAAGAACAGTCCACCTCCGAATCATCATCACGTGAAATTTCAAACCAGGTCGATTTCTATGATGAAGATGATCAAGGAGGAGGAAGAAGAAGAAATCAAGCCGGTAAAGAAAGCTTCACTGAAACCGAAGCGATCAGCGGCGGCGGCGCGGAAATCGAGGAGCCGGAGAAGAAAGCCGAAGTACTTGAGCCTCCGCTCGCCGCGGCTCTCCGCCCGAAACGACGTCGTCGCCGCCTCCTCCGCCGATACGGATTCCAAGATGACTGCTACTACTACTACTACGGCGGGGACGCGCCGCGGCCACCAGCTTAATTTGTTTCCGCTGCATCCGGAGCTGAACGTGGCGGAGGCGGATCACCAGTCCGACGACAACGTGGCTCTGCTGTTCGAATCCGACGGCGGAGCCACTCTCCACGGGCTGCTCACCTCCGCCGACACGGCCACCACGACGACGACGTCGACAATGTCGTCCGATCACGACCAGGCCGAGTCCAGTTACGGCTACCGCCGCGGAATGGAACGCGGCGACGATATCGTACGGTCGGCGATGAGGGGGAGCGGAGGAGATCGGAGCGTCGAGAAGTGGGTGTGTTACTCGGAGCTGGTGAAGGAGGAGGTCGAGTTAACGGCGACGACGACGAGCTCGGCGAGCACGTGTTGCAGCGTCGGCGATGATCGGAAAGGTCATCGGGATCGACGGCTGGCGTTGAAGCTTGACTATGAGGAGGTCTTGAATGCTTGGTCCGATAAGGGGTCGCTGTACATTAAAACCGAAGACGGCGAGCCGCCGCCGCAGACGGTGCCGGACTTGCTTCAGGATCAGCTCTTTCACCACCTCCATGATTCTACTGCCAATATTGAGGATTTATGGAGGGTGCCTGAAGAGGGTGGGAGTGGTAGCGGTAGCGGTAGCGGTAGCTTGGAGAGGAAGATTCAAAGACAGGCGAGTTTATTGAGATACAAGCGGAAAAGGGAGAACAGACTATTTTCTAAGCGGATTCGGTATGAAGTTCGGAAGCTAAATGCCGAGAAACGACCCCGTATGAAGGGTCGGTTTGTGAAGAGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

361

Amino Acids

40.49

Weight (kDa)

9.47

Isoelectric Point (pI)

57.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	318 - 360	3.6e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14370
fragaria_vesca	FvH4_6g52200 FvH4_6g52200 FvH4_6g52200
malus_domestica	MD09G1019800.v1.1 MD17G1020400.v1.1
prunus_persica	Prupe.3G296700_v2.0.a1
pyrus_communis	pycom111g01640 pycom17g01700
rosa_chinensis	RchiOBHm_Chr2g0173701
rosa_laevigata	RLG00000022215
rosa_multiflora	Rmu_co8469107.1_g000001 Rmu_sc0002538.1_g000006
rosa_roxburghii	Rroxscaffold_2G00078670 Rroxscaffold_2G00078690
rosa_rugosa	Rorug02G0572400
rosa_samantha	Rh2AG651300 Rh2BG661800 Rh2CG626700 Rh2CG626800 Rh2DG677000
rosa_wichuraiana	Rw2G053450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	469, 481
AatII	GACGTC	2 cut(s)	240, 473
AccB1I	GGYRCC	2 cut(s)	814, 889
AccBSI	CCGCTC	2 cut(s)	210, 573
AccI	GTMKAC	1 cut(s)	473
AccII	CGCG	6 cut(s)	163, 217, 307, 312, 525, 537
AccIII	TCCGGA	1 cut(s)	343
AclWI	GGATC	3 cut(s)	375, 714, 840
AcoI	YGGCCR	2 cut(s)	313, 453
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	2 cut(s)	812, 915
AcvI	CACGTG	2 cut(s)	46, 669
AcyI	GRCGYC	2 cut(s)	237, 470
AfaI	GTAC	3 cut(s)	197, 552, 776
AfiI	CCNNNNNNNGG	4 cut(s)	529, 765, 899, 1060
AflIII	ACRYGT	1 cut(s)	668
AgsI	TTSAA	4 cut(s)	56, 724, 748, 950
AjnI	CCWGG	2 cut(s)	59, 495
AluBI	AGCT	9 cut(s)	128, 322, 349, 616, 657, 727, 838, 933, 1033
AluI	AGCT	9 cut(s)	128, 322, 349, 616, 657, 727, 838, 933, 1033
Alw21I	GWGCWC	2 cut(s)	659, 668
AlwI	GGATC	3 cut(s)	375, 714, 840
Aor13HI	TCCGGA	1 cut(s)	343
AoxI	GGCC	3 cut(s)	313, 453, 498
ApeKI	GCWGC	3 cut(s)	337, 433, 675
ApoI	RAATTY	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	163, 309
AspS9I	GGNCC	1 cut(s)	756
AsuHPI	GGTGA	4 cut(s)	362, 430, 631, 836
AsuII	TTCGAA	1 cut(s)	402
AvaII	GGWCC	1 cut(s)	756
BanI	GGYRCC	2 cut(s)	814, 889
BanII	GRGCYC	1 cut(s)	659
BbrPI	CACGTG	2 cut(s)	46, 669
BbsI	GAAGAC	1 cut(s)	795
Bbv12I	GWGCWC	2 cut(s)	659, 668
BbvI	GCAGC	3 cut(s)	324, 420, 687
BceAI	ACGGC	7 cut(s)	312, 427, 468, 529, 657, 728, 808
BciT130I	CCWGG	2 cut(s)	61, 497
BclI	TGATCA	1 cut(s)	84
BglI	GCCNNNNNGGC	1 cut(s)	452
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	2 cut(s)	61, 497
Bme18I	GGWCC	1 cut(s)	756
BmgT120I	GGNCC	1 cut(s)	756
BmiI	GGNNCC	4 cut(s)	176, 418, 816, 891
BmrFI	CCNGG	2 cut(s)	61, 497
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	795
BplI	GAGNNNNNCTC	2 cut(s)	408, 440
Bpu14I	TTCGAA	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	220
BsaAI	YACGTR	2 cut(s)	46, 669
BsaHI	GRCGYC	2 cut(s)	237, 470
BsaJI	CCNNGG	4 cut(s)	215, 310, 427, 523
BsaWI	WCCGGW	1 cut(s)	343
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	4 cut(s)	529, 765, 899, 1060
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	373, 507
BseAI	TCCGGA	1 cut(s)	343
BseBI	CCWGG	2 cut(s)	61, 497
BseDI	CCNNGG	4 cut(s)	215, 310, 427, 523
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	4 cut(s)	529, 765, 899, 1060
BseNI	ACTGG	2 cut(s)	373, 507
BseRI	GAGGAG	6 cut(s)	107, 187, 241, 591, 641, 752
BseXI	GCAGC	3 cut(s)	324, 420, 687
Bsh1236I	CGCG	6 cut(s)	163, 217, 307, 312, 525, 537
Bsh1285I	CGRYCG	1 cut(s)	557
BshFI	GGCC	3 cut(s)	315, 455, 500
BshNI	GGYRCC	2 cut(s)	814, 889
BsiEI	CGRYCG	1 cut(s)	557
BsiHKAI	GWGCWC	2 cut(s)	659, 668
BsiSI	CCGG	4 cut(s)	116, 178, 344, 818
BsiWI	CGTACG	1 cut(s)	550
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	4 cut(s)	529, 765, 899, 1060
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	3 cut(s)	315, 455, 500
Bsp119I	TTCGAA	1 cut(s)	402
Bsp1286I	GDGCHC	2 cut(s)	659, 668
Bsp13I	TCCGGA	1 cut(s)	343
Bsp1407I	TGTACA	1 cut(s)	774
Bsp143I	GATC	8 cut(s)	84, 146, 367, 487, 580, 688, 706, 832
BspANI	GGCC	3 cut(s)	315, 455, 500
BspEI	TCCGGA	1 cut(s)	343
BspFNI	CGCG	6 cut(s)	163, 217, 307, 312, 525, 537
BspLI	GGNNCC	4 cut(s)	176, 418, 816, 891
BspPI	GGATC	3 cut(s)	375, 714, 840
BspT104I	TTCGAA	1 cut(s)	402
BspT107I	GGYRCC	2 cut(s)	814, 889
BsrBI	CCGCTC	2 cut(s)	210, 573
BsrFI	RCCGGY	1 cut(s)	115
BsrGI	TGTACA	1 cut(s)	774
BsrI	ACTGG	2 cut(s)	373, 507
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	4 cut(s)	215, 310, 427, 523
BssMI	GATC	8 cut(s)	84, 146, 367, 487, 580, 688, 706, 832
BssNI	GRCGYC	2 cut(s)	237, 470
Bst2UI	CCWGG	2 cut(s)	61, 497
Bst4CI	ACNGT	3 cut(s)	23, 555, 814
Bst6I	CTCTTC	2 cut(s)	891, 1070
BstACI	GRCGYC	2 cut(s)	237, 470
BstAPI	GCANNNNNTGC	2 cut(s)	672, 814
BstAUI	TGTACA	1 cut(s)	774
BstBAI	YACGTR	2 cut(s)	46, 669
BstBI	TTCGAA	1 cut(s)	402
BstC8I	GCNNGC	4 cut(s)	212, 664, 717, 797
BstDEI	CTNAG	1 cut(s)	1005
BstDSI	CCRYGG	4 cut(s)	215, 310, 427, 523
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	6 cut(s)	163, 217, 307, 312, 525, 537
BstHHI	GCGC	2 cut(s)	163, 309
BstKTI	GATC	8 cut(s)	87, 149, 370, 490, 583, 691, 709, 835
BstMBI	GATC	8 cut(s)	84, 146, 367, 487, 580, 688, 706, 832
BstMCI	CGRYCG	1 cut(s)	557
BstNI	CCWGG	2 cut(s)	61, 497
BstSCI	CCNGG	2 cut(s)	59, 495
BstUI	CGCG	6 cut(s)	163, 217, 307, 312, 525, 537
BstV1I	GCAGC	3 cut(s)	324, 420, 687
BstV2I	GAAGAC	1 cut(s)	795
BsuRI	GGCC	3 cut(s)	315, 455, 500
BtgI	CCRYGG	4 cut(s)	215, 310, 427, 523
BtgZI	GCGATG	2 cut(s)	575, 699
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	4 cut(s)	212, 664, 717, 797
CfoI	GCGC	2 cut(s)	163, 309
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	756
Cfr42I	CCGCGG	3 cut(s)	218, 313, 526
CseI	GACGC	3 cut(s)	313, 577, 667
CsiI	ACCWGGT	1 cut(s)	59
Csp6I	GTAC	3 cut(s)	196, 551, 775
CviAII	CATG	1 cut(s)	854
CviQI	GTAC	3 cut(s)	196, 551, 775
DdeI	CTNAG	1 cut(s)	1005
DpnI	GATC	8 cut(s)	86, 148, 369, 489, 582, 690, 708, 834
DpnII	GATC	8 cut(s)	84, 146, 367, 487, 580, 688, 706, 832
DrdI	GACNNNNNNGTC	2 cut(s)	469, 481
DseDI	GACNNNNNNGTC	2 cut(s)	469, 481
EaeI	YGGCCR	2 cut(s)	313, 453
Eam1104I	CTCTTC	2 cut(s)	891, 1070
EarI	CTCTTC	2 cut(s)	891, 1070
EciI	GGCGGA	6 cut(s)	214, 244, 374, 380, 429, 433
Ecl136II	GAGCTC	1 cut(s)	657
Eco24I	GRGCYC	1 cut(s)	659
Eco32I	GATATC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	756
Eco53kI	GAGCTC	1 cut(s)	657
Eco57I	CTGAAG	2 cut(s)	812, 915
Eco72I	CACGTG	2 cut(s)	46, 669
EcoICRI	GAGCTC	1 cut(s)	657
EcoRII	CCWGG	2 cut(s)	59, 495
EcoRV	GATATC	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	659
FaeI	CATG	1 cut(s)	857
FaiI	YATR	6 cut(s)	74, 735, 855, 883, 1020, 1058
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	1 cut(s)	853
FauI	CCCGC	1 cut(s)	292
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	473
FokI	GGATG	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	659
GlaI	GCGC	2 cut(s)	162, 308
HaeIII	GGCC	3 cut(s)	315, 455, 500
HapII	CCGG	4 cut(s)	116, 178, 344, 818
HgaI	GACGC	3 cut(s)	313, 577, 667
HhaI	GCGC	2 cut(s)	163, 309
Hin1I	GRCGYC	2 cut(s)	237, 470
Hin1II	CATG	1 cut(s)	857
Hin6I	GCGC	2 cut(s)	161, 307
HinP1I	GCGC	2 cut(s)	161, 307
HincII	GTYRAC	2 cut(s)	474, 639
HindII	GTYRAC	2 cut(s)	474, 639
HindIII	AAGCTT	2 cut(s)	126, 725
HinfI	GANTC	7 cut(s)	34, 266, 404, 503, 857, 946, 1012
HpaI	GTTAAC	1 cut(s)	639
HpaII	CCGG	4 cut(s)	116, 178, 344, 818
HphI	GGTGA	4 cut(s)	362, 430, 631, 836
Hpy166II	GTNNAC	3 cut(s)	26, 474, 639
Hpy188I	TCNGA	9 cut(s)	33, 379, 409, 487, 585, 613, 693, 760, 1029
Hpy188III	TCNNGA	6 cut(s)	344, 491, 592, 704, 745, 830
Hpy8I	GTNNAC	3 cut(s)	26, 474, 639
HpyAV	CCTTC	2 cut(s)	616, 1054
HpyCH4III	ACNGT	3 cut(s)	23, 555, 814
HpyCH4IV	ACGT	6 cut(s)	45, 237, 354, 387, 470, 668
HpyCH4V	TGCA	2 cut(s)	340, 675
HpyF3I	CTNAG	1 cut(s)	1005
HpySE526I	ACGT	6 cut(s)	45, 237, 354, 387, 470, 668
Hsp92I	GRCGYC	2 cut(s)	237, 470
Hsp92II	CATG	1 cut(s)	857
HspAI	GCGC	2 cut(s)	161, 307
Kpn2I	TCCGGA	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	84
KspAI	GTTAAC	1 cut(s)	639
KspI	CCGCGG	3 cut(s)	218, 313, 526
Kzo9I	GATC	8 cut(s)	84, 146, 367, 487, 580, 688, 706, 832
LmnI	GCTCC	6 cut(s)	174, 346, 416, 570, 585, 613
Lsp1109I	GCAGC	3 cut(s)	324, 420, 687
LweI	GCATC	1 cut(s)	349
MabI	ACCWGGT	1 cut(s)	59
MaeII	ACGT	6 cut(s)	45, 237, 354, 387, 470, 668
MaeIII	GTNAC	2 cut(s)	509, 605
MalI	GATC	8 cut(s)	86, 148, 369, 489, 582, 690, 708, 834
MbiI	CCGCTC	2 cut(s)	210, 573
MboI	GATC	8 cut(s)	84, 146, 367, 487, 580, 688, 706, 832
MboII	GAAGA	8 cut(s)	91, 110, 113, 116, 195, 800, 908, 955
MhlI	GDGCHC	2 cut(s)	659, 668
MluCI	AATT	2 cut(s)	50, 325
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	2 cut(s)	402, 432
MroI	TCCGGA	1 cut(s)	343
MseI	TTAA	3 cut(s)	324, 638, 780
MslI	CAYNNNNRTG	1 cut(s)	852
MspA1I	CMGCKG	5 cut(s)	152, 217, 312, 337, 525
MspI	CCGG	4 cut(s)	116, 178, 344, 818
MspR9I	CCNGG	2 cut(s)	61, 497
Mva1269I	GAATGC	1 cut(s)	754
MvaI	CCWGG	2 cut(s)	61, 497
MvnI	CGCG	6 cut(s)	163, 217, 307, 312, 525, 537
NdeII	GATC	8 cut(s)	84, 146, 367, 487, 580, 688, 706, 832
NlaIII	CATG	1 cut(s)	857
NlaIV	GGNNCC	4 cut(s)	176, 418, 816, 891
NmeAIII	GCCGAG	3 cut(s)	526, 638, 1066
NspV	TTCGAA	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	8 cut(s)	458, 467, 470, 479, 498, 647, 659, 665
PctI	GAATGC	1 cut(s)	754
PfeI	GAWTC	6 cut(s)	34, 266, 404, 857, 946, 1012
Pfl23II	CGTACG	1 cut(s)	550
PflFI	GACNNNGTC	3 cut(s)	239, 469, 478
PleI	GAGTC	1 cut(s)	511
PmaCI	CACGTG	2 cut(s)	46, 669
PmlI	CACGTG	2 cut(s)	46, 669
PpsI	GAGTC	1 cut(s)	511
Ppu21I	YACGTR	2 cut(s)	46, 669
Psp124BI	GAGCTC	1 cut(s)	659
Psp6I	CCWGG	2 cut(s)	59, 495
PspCI	CACGTG	2 cut(s)	46, 669
PspGI	CCWGG	2 cut(s)	59, 495
PspLI	CGTACG	1 cut(s)	550
PspN4I	GGNNCC	4 cut(s)	176, 418, 816, 891
PspPI	GGNCC	1 cut(s)	756
PsyI	GACNNNGTC	3 cut(s)	239, 469, 478
RsaI	GTAC	3 cut(s)	197, 552, 776
RsaNI	GTAC	3 cut(s)	196, 551, 775
RseI	CAYNNNNRTG	1 cut(s)	852
SacI	GAGCTC	1 cut(s)	659
SacII	CCGCGG	3 cut(s)	218, 313, 526
SalI	GTCGAC	1 cut(s)	472
SaqAI	TTAA	3 cut(s)	324, 638, 780
Sau3AI	GATC	8 cut(s)	84, 146, 367, 487, 580, 688, 706, 832
Sau96I	GGNCC	1 cut(s)	756
ScaI	AGTACT	1 cut(s)	197
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	2 cut(s)	61, 497
SduI	GDGCHC	2 cut(s)	659, 668
SexAI	ACCWGGT	1 cut(s)	59
SfaNI	GCATC	1 cut(s)	349
Sfr303I	CCGCGG	3 cut(s)	218, 313, 526
SfuI	TTCGAA	1 cut(s)	402
SgrBI	CCGCGG	3 cut(s)	218, 313, 526
SinI	GGWCC	1 cut(s)	756
SmiMI	CAYNNNNRTG	1 cut(s)	852
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	2 cut(s)	50, 325
SspI	AATATT	1 cut(s)	871
SstI	GAGCTC	1 cut(s)	659
StyD4I	CCNGG	2 cut(s)	59, 495
TaaI	ACNGT	3 cut(s)	23, 555, 814
TaiI	ACGT	6 cut(s)	48, 240, 357, 390, 473, 671
TaqI	TCGA	7 cut(s)	65, 170, 402, 473, 591, 633, 709
TasI	AATT	2 cut(s)	50, 325
TatI	WGTACW	2 cut(s)	195, 774
TfiI	GAWTC	6 cut(s)	34, 266, 404, 857, 946, 1012
Tru1I	TTAA	3 cut(s)	324, 638, 780
Tru9I	TTAA	3 cut(s)	324, 638, 780
TscAI	CASTG	1 cut(s)	138
TseI	GCWGC	3 cut(s)	337, 433, 675
TspDTI	ATGAA	3 cut(s)	92, 1035, 1073
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	138
Tth111I	GACNNNGTC	3 cut(s)	239, 469, 478
VpaK11BI	GGWCC	1 cut(s)	756
XapI	RAATTY	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	473
ZraI	GACGTC	2 cut(s)	238, 471
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.