RLG00000022215

Zinc finger protein CONSTANS-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009406
Physical Location & Seq
Forward (+)
81737242 .. 81738726
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022215

Sequence Viewer

Length: 1083 bp
ATGTGCCACCACAACAAGAACAGTCCACCTCTGAATCATCATCACGTGAAATTTCAAACCAGGTCGATCTCTATGATGAAGATGATCAAGGAGGAAGAAGAAGAAGAAATCAAGCCGGTAAAGAAAGCTTCACTGAAACCGAAGCGATCAGCGGCGGCGCGGAAATCGAGGAGCCGGAGAAGAAAGCCGAAGTACTTGAGCCTCCGCTCGTCGCGGCTCTCCGCCCGAAACGACGTCGTCGCCGCCTCCTCCGCCGATTCGGATTCCAAGATGAATACTGCTACTACTACTACTACTACGACTACGGCGGTGACGCGCCGCAGCCACCAGCTCAATTTGTTTCCCTTGCATCCGGAGCTGAACGCGGCGGAGGCGGATCACCAGTCCGACGACAACGTGGCTCTGCTGTTCGAATCCGACGGTGGAGCCACTCTCCACGGGCTGCTCACCTCCGCCGACACCGCCACCACCACCACGACGTCGACAATGTCGTCCGATCACGACCAGGTCGAGTCCAGTTACGGCTACCGCCGCGGAATGGAACGCGGTGACGATATCGTACGGTCGGCGATGAGGGGGAGCGGAGGAGATCGGAGCGTGGAGAAGTGGGTGTGTTACTCGGAGCTGGTGAAGGAGGAGGTCGAGTTAACGGCGACGACGACGAGCTCGGCGAGCACGTGTTGCAGCGTCGGCGATGATCGGAAAGGTCATCGGGATCGACGGCTGGCGTTGAAGCTTGACTATGAGGAGGTCTTGAATGCTTGGTCCGACAAGGGGTCGCTGTACATTAAAACCGAAGACGGCGAGCCGCCGCCGCAGACGGTGCCGGACTTGCTTCAGGATCAGCTCTTTCACCACCTCAATGATTCCACTGCCAATATTGAGGATTTATGGAGGGTGCCTGAAGAGGGTGGGAGTGGTAGCGGTAGCTTGGAGAGGAAGATTCAAAGACAGGCGAGTTTACTGAGATACAAGCGGAAAAGGGAGAACAGGCTGTTTTCTAAGCGGATTCGGTATGAAGTTCGGAAGCTAAATGCCGAGAAACGACCCCGCATGAAGGGTCGGTTTGTGAAGAGTAGTTGA

Protein Analysis

361

Amino Acids

40.59

Weight (kDa)

9.47

Isoelectric Point (pI)

59.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 317 - 359 3.6e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 490
AatII GACGTC 2 cut(s) 237, 482
AccB1I GGYRCC 2 cut(s) 823, 898
AccBSI CCGCTC 2 cut(s) 207, 582
AccI GTMKAC 1 cut(s) 482
AccII CGCG 6 cut(s) 160, 214, 316, 365, 534, 546
AccIII TCCGGA 1 cut(s) 352
AclWI GGATC 3 cut(s) 384, 723, 849
AcsI RAATTY 1 cut(s) 50
AcuI CTGAAG 2 cut(s) 821, 924
AcvI CACGTG 2 cut(s) 46, 678
AcyI GRCGYC 2 cut(s) 234, 479
AfaI GTAC 3 cut(s) 194, 561, 785
AfiI CCNNNNNNNGG 4 cut(s) 538, 774, 908, 1057
AflIII ACRYGT 1 cut(s) 677
AgsI TTSAA 4 cut(s) 56, 733, 757, 947
AhdI GACNNNNNGTC 1 cut(s) 775
AjnI CCWGG 2 cut(s) 59, 504
AluBI AGCT 9 cut(s) 128, 331, 358, 625, 666, 736, 847, 930, 1030
AluI AGCT 9 cut(s) 128, 331, 358, 625, 666, 736, 847, 930, 1030
Alw21I GWGCWC 2 cut(s) 668, 677
AlwI GGATC 3 cut(s) 384, 723, 849
Aor13HI TCCGGA 1 cut(s) 352
ApeKI GCWGC 3 cut(s) 321, 442, 684
ApoI RAATTY 1 cut(s) 50
AspLEI GCGC 2 cut(s) 160, 318
AspS9I GGNCC 1 cut(s) 765
AsuHPI GGTGA 6 cut(s) 322, 371, 439, 560, 640, 845
AsuII TTCGAA 1 cut(s) 411
AvaII GGWCC 1 cut(s) 765
BanI GGYRCC 2 cut(s) 823, 898
BanII GRGCYC 1 cut(s) 668
BbrPI CACGTG 2 cut(s) 46, 678
BbsI GAAGAC 1 cut(s) 804
Bbv12I GWGCWC 2 cut(s) 668, 677
BbvI GCAGC 3 cut(s) 333, 429, 696
BceAI ACGGC 5 cut(s) 321, 538, 666, 737, 817
BciT130I CCWGG 2 cut(s) 61, 506
BclI TGATCA 1 cut(s) 84
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 2 cut(s) 61, 506
Bme18I GGWCC 1 cut(s) 765
BmeRI GACNNNNNGTC 1 cut(s) 775
BmgT120I GGNCC 1 cut(s) 765
BmiI GGNNCC 4 cut(s) 173, 427, 825, 900
BmrFI CCNGG 2 cut(s) 61, 506
BmsI GCATC 1 cut(s) 358
BpiI GAAGAC 1 cut(s) 804
BplI GAGNNNNNCTC 2 cut(s) 417, 449
Bpu14I TTCGAA 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 217
BsaAI YACGTR 2 cut(s) 46, 678
BsaHI GRCGYC 2 cut(s) 234, 479
BsaJI CCNNGG 2 cut(s) 436, 532
BsaWI WCCGGW 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 629, 659
Bsc4I CCNNNNNNNGG 4 cut(s) 538, 774, 908, 1057
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 2 cut(s) 382, 516
BseAI TCCGGA 1 cut(s) 352
BseBI CCWGG 2 cut(s) 61, 506
BseDI CCNNGG 2 cut(s) 436, 532
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 4 cut(s) 538, 774, 908, 1057
BseMII CTCAG 1 cut(s) 956
BseNI ACTGG 2 cut(s) 382, 516
BseRI GAGGAG 5 cut(s) 184, 238, 600, 650, 761
BseXI GCAGC 3 cut(s) 333, 429, 696
Bsh1236I CGCG 6 cut(s) 160, 214, 316, 365, 534, 546
Bsh1285I CGRYCG 1 cut(s) 566
BshNI GGYRCC 2 cut(s) 823, 898
BsiEI CGRYCG 1 cut(s) 566
BsiHKAI GWGCWC 2 cut(s) 668, 677
BsiSI CCGG 4 cut(s) 116, 175, 353, 827
BsiWI CGTACG 1 cut(s) 559
BslI CCNNNNNNNGG 4 cut(s) 538, 774, 908, 1057
BsmI GAATGC 1 cut(s) 763
Bsp119I TTCGAA 1 cut(s) 411
Bsp1286I GDGCHC 2 cut(s) 668, 677
Bsp13I TCCGGA 1 cut(s) 352
Bsp1407I TGTACA 1 cut(s) 783
Bsp143I GATC 9 cut(s) 66, 84, 146, 376, 496, 589, 697, 715, 841
BspCNI CTCAG 1 cut(s) 957
BspEI TCCGGA 1 cut(s) 352
BspFNI CGCG 6 cut(s) 160, 214, 316, 365, 534, 546
BspLI GGNNCC 4 cut(s) 173, 427, 825, 900
BspPI GGATC 3 cut(s) 384, 723, 849
BspT104I TTCGAA 1 cut(s) 411
BspT107I GGYRCC 2 cut(s) 823, 898
BsrBI CCGCTC 2 cut(s) 207, 582
BsrFI RCCGGY 1 cut(s) 115
BsrGI TGTACA 1 cut(s) 783
BsrI ACTGG 2 cut(s) 382, 516
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 436, 532
BssMI GATC 9 cut(s) 66, 84, 146, 376, 496, 589, 697, 715, 841
BssNI GRCGYC 2 cut(s) 234, 479
Bst2UI CCWGG 2 cut(s) 61, 506
Bst4CI ACNGT 4 cut(s) 23, 422, 564, 823
Bst6I CTCTTC 2 cut(s) 900, 1067
BstACI GRCGYC 2 cut(s) 234, 479
BstAPI GCANNNNNTGC 2 cut(s) 681, 823
BstAUI TGTACA 1 cut(s) 783
BstBAI YACGTR 2 cut(s) 46, 678
BstBI TTCGAA 1 cut(s) 411
BstC8I GCNNGC 3 cut(s) 673, 726, 806
BstDEI CTNAG 2 cut(s) 965, 1002
BstDSI CCRYGG 2 cut(s) 436, 532
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 6 cut(s) 160, 214, 316, 365, 534, 546
BstHHI GCGC 2 cut(s) 160, 318
BstKTI GATC 9 cut(s) 69, 87, 149, 379, 499, 592, 700, 718, 844
BstMBI GATC 9 cut(s) 66, 84, 146, 376, 496, 589, 697, 715, 841
BstMCI CGRYCG 1 cut(s) 566
BstNI CCWGG 2 cut(s) 61, 506
BstSCI CCNGG 2 cut(s) 59, 504
BstUI CGCG 6 cut(s) 160, 214, 316, 365, 534, 546
BstV1I GCAGC 3 cut(s) 333, 429, 696
BstV2I GAAGAC 1 cut(s) 804
BtgI CCRYGG 2 cut(s) 436, 532
BtgZI GCGATG 2 cut(s) 584, 708
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 2 cut(s) 131, 870
Cac8I GCNNGC 3 cut(s) 673, 726, 806
CfoI GCGC 2 cut(s) 160, 318
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 765
Cfr42I CCGCGG 1 cut(s) 535
CseI GACGC 2 cut(s) 322, 676
CsiI ACCWGGT 2 cut(s) 59, 504
Csp6I GTAC 3 cut(s) 193, 560, 784
CviAII CATG 1 cut(s) 1054
CviQI GTAC 3 cut(s) 193, 560, 784
DdeI CTNAG 2 cut(s) 965, 1002
DpnI GATC 9 cut(s) 68, 86, 148, 378, 498, 591, 699, 717, 843
DpnII GATC 9 cut(s) 66, 84, 146, 376, 496, 589, 697, 715, 841
DrdI GACNNNNNNGTC 1 cut(s) 490
DriI GACNNNNNGTC 1 cut(s) 775
DseDI GACNNNNNNGTC 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 900, 1067
Eam1105I GACNNNNNGTC 1 cut(s) 775
EarI CTCTTC 2 cut(s) 900, 1067
EciI GGCGGA 5 cut(s) 211, 241, 383, 389, 442
Ecl136II GAGCTC 1 cut(s) 666
Eco24I GRGCYC 1 cut(s) 668
Eco32I GATATC 1 cut(s) 556
Eco47I GGWCC 1 cut(s) 765
Eco53kI GAGCTC 1 cut(s) 666
Eco57I CTGAAG 2 cut(s) 821, 924
Eco72I CACGTG 2 cut(s) 46, 678
EcoICRI GAGCTC 1 cut(s) 666
EcoRII CCWGG 2 cut(s) 59, 504
EcoRV GATATC 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 668
FaeI CATG 1 cut(s) 1057
FaiI YATR 5 cut(s) 74, 744, 892, 1017, 1055
FatI CATG 1 cut(s) 1053
FauI CCCGC 1 cut(s) 1058
FbaI TGATCA 1 cut(s) 84
FblI GTMKAC 1 cut(s) 482
FokI GGATG 1 cut(s) 336
FriOI GRGCYC 1 cut(s) 668
GlaI GCGC 2 cut(s) 159, 317
HapII CCGG 4 cut(s) 116, 175, 353, 827
HgaI GACGC 2 cut(s) 322, 676
HhaI GCGC 2 cut(s) 160, 318
Hin1I GRCGYC 2 cut(s) 234, 479
Hin1II CATG 1 cut(s) 1057
Hin6I GCGC 2 cut(s) 158, 316
HinP1I GCGC 2 cut(s) 158, 316
HincII GTYRAC 2 cut(s) 483, 648
HindII GTYRAC 2 cut(s) 483, 648
HindIII AAGCTT 2 cut(s) 126, 734
HinfI GANTC 8 cut(s) 34, 257, 263, 413, 512, 866, 943, 1009
HpaI GTTAAC 1 cut(s) 648
HpaII CCGG 4 cut(s) 116, 175, 353, 827
HphI GGTGA 6 cut(s) 322, 371, 439, 560, 640, 845
Hpy166II GTNNAC 4 cut(s) 26, 483, 648, 962
Hpy188III TCNNGA 5 cut(s) 353, 500, 713, 754, 839
Hpy8I GTNNAC 4 cut(s) 26, 483, 648, 962
HpyAV CCTTC 2 cut(s) 625, 1051
HpyCH4III ACNGT 4 cut(s) 23, 422, 564, 823
HpyCH4IV ACGT 5 cut(s) 45, 234, 396, 479, 677
HpyCH4V TGCA 2 cut(s) 349, 684
HpyF3I CTNAG 2 cut(s) 965, 1002
HpySE526I ACGT 5 cut(s) 45, 234, 396, 479, 677
Hsp92I GRCGYC 2 cut(s) 234, 479
Hsp92II CATG 1 cut(s) 1057
HspAI GCGC 2 cut(s) 158, 316
Kpn2I TCCGGA 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 84
KspAI GTTAAC 1 cut(s) 648
KspI CCGCGG 1 cut(s) 535
Kzo9I GATC 9 cut(s) 66, 84, 146, 376, 496, 589, 697, 715, 841
LmnI GCTCC 6 cut(s) 171, 355, 425, 579, 594, 622
Lsp1109I GCAGC 3 cut(s) 333, 429, 696
LweI GCATC 1 cut(s) 358
MabI ACCWGGT 2 cut(s) 59, 504
MaeII ACGT 5 cut(s) 45, 234, 396, 479, 677
MaeIII GTNAC 4 cut(s) 310, 518, 548, 614
MalI GATC 9 cut(s) 68, 86, 148, 378, 498, 591, 699, 717, 843
MbiI CCGCTC 2 cut(s) 207, 582
MboI GATC 9 cut(s) 66, 84, 146, 376, 496, 589, 697, 715, 841
MboII GAAGA 9 cut(s) 91, 107, 110, 113, 116, 192, 809, 917, 952
MhlI GDGCHC 2 cut(s) 668, 677
MluCI AATT 2 cut(s) 50, 334
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 3 cut(s) 411, 441, 792
MroI TCCGGA 1 cut(s) 352
MseI TTAA 2 cut(s) 647, 789
MslI CAYNNNNRTG 1 cut(s) 861
MspA1I CMGCKG 2 cut(s) 152, 534
MspI CCGG 4 cut(s) 116, 175, 353, 827
MspR9I CCNGG 2 cut(s) 61, 506
Mva1269I GAATGC 1 cut(s) 763
MvaI CCWGG 2 cut(s) 61, 506
MvnI CGCG 6 cut(s) 160, 214, 316, 365, 534, 546
NdeII GATC 9 cut(s) 66, 84, 146, 376, 496, 589, 697, 715, 841
NlaIII CATG 1 cut(s) 1057
NlaIV GGNNCC 4 cut(s) 173, 427, 825, 900
NmeAIII GCCGAG 2 cut(s) 647, 1063
NmuCI GTSAC 2 cut(s) 310, 548
NspV TTCGAA 1 cut(s) 411
PcsI WCGNNNNNNNCGW 5 cut(s) 488, 507, 656, 668, 674
PctI GAATGC 1 cut(s) 763
PfeI GAWTC 7 cut(s) 34, 257, 263, 413, 866, 943, 1009
Pfl23II CGTACG 1 cut(s) 559
PflFI GACNNNGTC 3 cut(s) 236, 487, 506
PleI GAGTC 1 cut(s) 520
PmaCI CACGTG 2 cut(s) 46, 678
PmlI CACGTG 2 cut(s) 46, 678
PpsI GAGTC 1 cut(s) 520
Ppu21I YACGTR 2 cut(s) 46, 678
Psp124BI GAGCTC 1 cut(s) 668
Psp6I CCWGG 2 cut(s) 59, 504
PspCI CACGTG 2 cut(s) 46, 678
PspGI CCWGG 2 cut(s) 59, 504
PspLI CGTACG 1 cut(s) 559
PspN4I GGNNCC 4 cut(s) 173, 427, 825, 900
PspPI GGNCC 1 cut(s) 765
PsyI GACNNNGTC 3 cut(s) 236, 487, 506
RsaI GTAC 3 cut(s) 194, 561, 785
RsaNI GTAC 3 cut(s) 193, 560, 784
RseI CAYNNNNRTG 1 cut(s) 861
SacI GAGCTC 1 cut(s) 668
SacII CCGCGG 1 cut(s) 535
SalI GTCGAC 1 cut(s) 481
SaqAI TTAA 2 cut(s) 647, 789
Sau3AI GATC 9 cut(s) 66, 84, 146, 376, 496, 589, 697, 715, 841
Sau96I GGNCC 1 cut(s) 765
ScaI AGTACT 1 cut(s) 194
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 2 cut(s) 61, 506
SduI GDGCHC 2 cut(s) 668, 677
SexAI ACCWGGT 2 cut(s) 59, 504
SfaNI GCATC 1 cut(s) 358
Sfr303I CCGCGG 1 cut(s) 535
SfuI TTCGAA 1 cut(s) 411
SgrBI CCGCGG 1 cut(s) 535
SinI GGWCC 1 cut(s) 765
SmiMI CAYNNNNRTG 1 cut(s) 861
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 2 cut(s) 50, 334
SspI AATATT 1 cut(s) 880
SstI GAGCTC 1 cut(s) 668
StyD4I CCNGG 2 cut(s) 59, 504
TaaI ACNGT 4 cut(s) 23, 422, 564, 823
TaiI ACGT 5 cut(s) 48, 237, 399, 482, 680
TaqI TCGA 7 cut(s) 65, 167, 411, 482, 510, 642, 718
TasI AATT 2 cut(s) 50, 334
TatI WGTACW 2 cut(s) 192, 783
TfiI GAWTC 7 cut(s) 34, 257, 263, 413, 866, 943, 1009
Tru1I TTAA 2 cut(s) 647, 789
Tru9I TTAA 2 cut(s) 647, 789
TscAI CASTG 2 cut(s) 138, 877
TseFI GTSAC 2 cut(s) 310, 548
TseI GCWGC 3 cut(s) 321, 442, 684
Tsp45I GTSAC 2 cut(s) 310, 548
TspDTI ATGAA 4 cut(s) 92, 287, 1032, 1070
TspRI CASTG 2 cut(s) 138, 877
Tth111I GACNNNGTC 3 cut(s) 236, 487, 506
VpaK11BI GGWCC 1 cut(s) 765
XapI RAATTY 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 482
ZraI GACGTC 2 cut(s) 235, 480
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.