Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009406

Physical Location & Seq

Genomic Coordinates Forward (+)

80071811 .. 80072676

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG626800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGACTACTACGACTGCGGCGACGCGCCGTGCACACCAGCCCAATCTGTTTCCGCTGCATCCGGAGCTGAACGCGGCGGAGGTGGATCACCAGTCCGACGACAACGTGGCTCTGCTGTTCGAATCCGACGGCGGAGCCACTCTCCACCGTCTGCTCACCTCCAGCCGACACCGCCACCACTACGACGACGTTGACAATGTCGTCCGATCACGACCAGGTCAAGTCCAGCTACGGCTACTGCCGCGGAGTGGACCGCGGCGACGATATTGTACGGACGGCGATGAGGGGGAGCGGAGGAGATCGGAGCGTCGAGAAGTGGTTGTGTTACTCGGGGCGTTGAAGCTTGACTATGAGGAGGTCTTGAAGGGATCGCTGTACATTAAAACCGAAGACGGCGAGCTGCCGCTGCAAACGGTGCCGGACTTGCTTCAGGATCAGCTCTTTCGCCACCTTCATGATTCCCACTGCCAATGTAAGAACCATCATAATCATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

165

Amino Acids

19.0

Weight (kDa)

6.52

Isoelectric Point (pI)

67.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14370
fragaria_vesca	FvH4_6g52200 FvH4_6g52200 FvH4_6g52200
malus_domestica	MD09G1019800.v1.1 MD17G1020400.v1.1
prunus_persica	Prupe.3G296700_v2.0.a1
pyrus_communis	pycom111g01640 pycom17g01700
rosa_chinensis	RchiOBHm_Chr2g0173701
rosa_laevigata	RLG00000022215
rosa_multiflora	Rmu_co8469107.1_g000001 Rmu_sc0002538.1_g000006
rosa_roxburghii	Rroxscaffold_2G00078670 Rroxscaffold_2G00078690
rosa_rugosa	Rorug02G0572400
rosa_samantha	Rh2AG651300 Rh2BG661800 Rh2CG626700 Rh2CG626800 Rh2DG677000
rosa_wichuraiana	Rw2G053450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	415
AccBSI	CCGCTC	1 cut(s)	292
AccII	CGCG	4 cut(s)	25, 74, 244, 256
AccIII	TCCGGA	1 cut(s)	61
AclWI	GGATC	3 cut(s)	93, 376, 441
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	2 cut(s)	271, 377
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	2 cut(s)	340, 364
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	5 cut(s)	67, 229, 343, 400, 439
AluI	AGCT	5 cut(s)	67, 229, 343, 400, 439
Alw21I	GWGCWC	1 cut(s)	34
Alw44I	GTGCAC	1 cut(s)	30
AlwI	GGATC	3 cut(s)	93, 376, 441
Ama87I	CYCGRG	1 cut(s)	329
Aor13HI	TCCGGA	1 cut(s)	61
ApaLI	GTGCAC	1 cut(s)	30
ApeKI	GCWGC	3 cut(s)	55, 400, 406
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	80, 148
AsuII	TTCGAA	1 cut(s)	120
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	3 cut(s)	42, 387, 393
BccI	CCATC	1 cut(s)	489
BceAI	ACGGC	5 cut(s)	12, 145, 248, 292, 409
BciT130I	CCWGG	1 cut(s)	216
BisI	GCNGC	8 cut(s)	18, 56, 75, 242, 257, 401, 404, 407
BlsI	GCNGC	8 cut(s)	19, 57, 76, 243, 258, 402, 405, 408
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	251
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	136, 417
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	396
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
BpmI	CTGGAG	1 cut(s)	145
Bpu14I	TTCGAA	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	242, 254
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	91
BseAI	TCCGGA	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	242, 254
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	2 cut(s)	310, 368
BseSI	GKGCMC	1 cut(s)	34
BseXI	GCAGC	3 cut(s)	42, 387, 393
Bsh1236I	CGCG	4 cut(s)	25, 74, 244, 256
BshNI	GGYRCC	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	34
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	62, 419
BslI	CCNNNNNNNGG	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp13I	TCCGGA	1 cut(s)	61
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	5 cut(s)	85, 206, 299, 368, 433
BspEI	TCCGGA	1 cut(s)	61
BspFNI	CGCG	4 cut(s)	25, 74, 244, 256
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	136, 417
BspPI	GGATC	3 cut(s)	93, 376, 441
BspT104I	TTCGAA	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	415
BsrBI	CCGCTC	1 cut(s)	292
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	242, 254
BssMI	GATC	5 cut(s)	85, 206, 299, 368, 433
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	149, 415
BstAPI	GCANNNNNTGC	1 cut(s)	415
BstAUI	TGTACA	1 cut(s)	375
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	398
BstDSI	CCRYGG	2 cut(s)	242, 254
BstF5I	GGATG	1 cut(s)	58
BstFNI	CGCG	4 cut(s)	25, 74, 244, 256
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	5 cut(s)	88, 209, 302, 371, 436
BstMBI	GATC	5 cut(s)	85, 206, 299, 368, 433
BstMWI	GCNNNNNNNGC	6 cut(s)	64, 171, 241, 406, 415, 424
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	34
BstUI	CGCG	4 cut(s)	25, 74, 244, 256
BstV1I	GCAGC	3 cut(s)	42, 387, 393
BstV2I	GAAGAC	1 cut(s)	396
BtgI	CCRYGG	2 cut(s)	242, 254
BtgZI	GCGATG	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	58
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	398
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	251
Cfr42I	CCGCGG	2 cut(s)	245, 257
CseI	GACGC	2 cut(s)	31, 296
CsiI	ACCWGGT	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	270, 376
CviAII	CATG	1 cut(s)	455
CviQI	GTAC	2 cut(s)	270, 376
DpnI	GATC	5 cut(s)	87, 208, 301, 370, 435
DpnII	GATC	5 cut(s)	85, 206, 299, 368, 433
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
EciI	GGCGGA	2 cut(s)	92, 147
Eco47I	GGWCC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	214
FaeI	CATG	1 cut(s)	458
FaiI	YATR	3 cut(s)	351, 456, 486
FatI	CATG	1 cut(s)	454
Fnu4HI	GCNGC	8 cut(s)	18, 56, 75, 242, 257, 401, 404, 407
FokI	GGATG	1 cut(s)	45
Fsp4HI	GCNGC	8 cut(s)	18, 56, 75, 242, 257, 401, 404, 407
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	8 cut(s)	18, 56, 75, 242, 257, 401, 404, 407
GsuI	CTGGAG	1 cut(s)	145
HapII	CCGG	2 cut(s)	62, 419
HgaI	GACGC	2 cut(s)	31, 296
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	458
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	2 cut(s)	122, 458
HpaII	CCGG	2 cut(s)	62, 419
HphI	GGTGA	2 cut(s)	80, 148
Hpy166II	GTNNAC	3 cut(s)	32, 193, 251
Hpy188I	TCNGA	4 cut(s)	97, 127, 206, 304
Hpy188III	TCNNGA	6 cut(s)	62, 210, 311, 361, 431, 455
Hpy8I	GTNNAC	3 cut(s)	32, 193, 251
Hpy99I	CGWCG	7 cut(s)	25, 101, 131, 188, 191, 264, 312
HpyAV	CCTTC	2 cut(s)	358, 461
HpyCH4III	ACNGT	2 cut(s)	149, 415
HpyCH4IV	ACGT	2 cut(s)	105, 189
HpyCH4V	TGCA	3 cut(s)	32, 58, 409
HpyF10VI	GCNNNNNNNGC	6 cut(s)	64, 171, 241, 406, 415, 424
HpySE526I	ACGT	2 cut(s)	105, 189
Hsp92II	CATG	1 cut(s)	458
HspAI	GCGC	1 cut(s)	25
Kpn2I	TCCGGA	1 cut(s)	61
KspI	CCGCGG	2 cut(s)	245, 257
Kzo9I	GATC	5 cut(s)	85, 206, 299, 368, 433
LmnI	GCTCC	4 cut(s)	64, 134, 289, 304
LpnPI	CCDG	9 cut(s)	50, 75, 104, 175, 201, 228, 239, 416, 432
Lsp1109I	GCAGC	3 cut(s)	42, 387, 393
LweI	GCATC	1 cut(s)	67
MabI	ACCWGGT	1 cut(s)	214
MaeII	ACGT	2 cut(s)	105, 189
MaeIII	GTNAC	1 cut(s)	324
MalI	GATC	5 cut(s)	87, 208, 301, 370, 435
MbiI	CCGCTC	1 cut(s)	292
MboI	GATC	5 cut(s)	85, 206, 299, 368, 433
MboII	GAAGA	1 cut(s)	401
MhlI	GDGCHC	1 cut(s)	34
MmeI	TCCRAC	2 cut(s)	120, 150
MnlI	CCTC	6 cut(s)	73, 169, 277, 288, 346, 349
MroI	TCCGGA	1 cut(s)	61
MseI	TTAA	2 cut(s)	381, 496
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	4 cut(s)	55, 244, 256, 406
MspI	CCGG	2 cut(s)	62, 419
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	4 cut(s)	25, 74, 244, 256
MwoI	GCNNNNNNNGC	6 cut(s)	64, 171, 241, 406, 415, 424
NdeII	GATC	5 cut(s)	85, 206, 299, 368, 433
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	2 cut(s)	136, 417
NspV	TTCGAA	1 cut(s)	120
PagI	TCATGA	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	122, 458
PflFI	GACNNNGTC	2 cut(s)	197, 216
PkrI	GCNGC	8 cut(s)	19, 57, 76, 243, 258, 402, 405, 408
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	136, 417
PspPI	GGNCC	1 cut(s)	251
PsyI	GACNNNGTC	2 cut(s)	197, 216
RsaI	GTAC	2 cut(s)	271, 377
RsaNI	GTAC	2 cut(s)	270, 376
RseI	CAYNNNNRTG	1 cut(s)	453
SacII	CCGCGG	2 cut(s)	245, 257
SaqAI	TTAA	2 cut(s)	381, 496
SatI	GCNGC	8 cut(s)	18, 56, 75, 242, 257, 401, 404, 407
Sau3AI	GATC	5 cut(s)	85, 206, 299, 368, 433
Sau96I	GGNCC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	34
SexAI	ACCWGGT	1 cut(s)	214
SfaNI	GCATC	1 cut(s)	67
Sfr303I	CCGCGG	2 cut(s)	245, 257
SfuI	TTCGAA	1 cut(s)	120
SgrBI	CCGCGG	2 cut(s)	245, 257
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	149, 415
TaiI	ACGT	2 cut(s)	108, 192
TaqI	TCGA	2 cut(s)	120, 310
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	5 cut(s)	20, 77, 244, 259, 406
TfiI	GAWTC	2 cut(s)	122, 458
Tru1I	TTAA	2 cut(s)	381, 496
Tru9I	TTAA	2 cut(s)	381, 496
TscAI	CASTG	1 cut(s)	470
TseI	GCWGC	3 cut(s)	55, 400, 406
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	470
Tth111I	GACNNNGTC	2 cut(s)	197, 216
VneI	GTGCAC	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.