Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009406

Physical Location & Seq

Genomic Coordinates Forward (+)

26351442 .. 26354405

Gene Structure 2964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G296700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTGCAACAAGAAGAGTCCACCTCTTCCTCCTTCTGCTACTCCTACTTGTCATGATGATGATCCTGTGCAAACCAGCTCTATGATTCATAATATCATCAAGGAAGAACAACAAGAAACCTCCACAGACCCGGCATCAGCTCACCGCAAATCCAGAACCAAGACCAGGAAGCCCAAGTTCTTAAGCCTCCGATCCCAACTCTCGCTCCCCAAGCATGATCACGACCAAGATTATTACACAGTACCAGATTCGACCACTACAAATACAATGACCGCCGGTCAACGCCACCAGCTCAACCTCTTCCCACTCCACCCGGAAAACCTTGTCTACCACCAAGACAAAGCCGACATGCAGGACGACAACGTGGCCTTACTCTTCCACTCAGACGGCGGAGCCACCCTCAACGGCCTCCTCACATCCACCTCCACCGCCACGACCTCCACCTCGACAACCACCACAATGTCATCTGACCGAGAGGACCAAGAGTCGTTTTCCACCTACGCCTACTATAACATTGTACGGACGGCGATGAGGAGCCGAGAGAGGGAGACGAGCGTGGAGAAGTGGGTGTGCTACTCGGAGCTGGTGGACAAGAAGGAGGAGGAGCCTCGTCGTGACGTGGAGGAGCGGTGGAGGAGCGGGACCTTGGCTTTGAAGCTTGATTATGAGGAGATCTTGAATGCTTGGTCTGATAAGGGCCCACTTTGCATTGATGGGGACTCACTACAGACTGTTCCTGACCAGCTTTTTCAGCTCCATGATAACACTCCCAATGGTGAGGGATGTGATGGGAATTTATGGAGGGTCCCAGGAGGAGAGGATGAGAGCCTGAAAACGAAGATGGGGAAAACTCAAAGAGAGGCGAGTGTATTGAGATACAAGGAAAAAAGGCAAAACAGGCTCTTCTCTAAGCGGATCCGATACCAAGTTCGAAAGGTCAATGCCGAAAAACGACCCCGTATGAAGGGTCGATTCGTGAAGAAGAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

331

Amino Acids

37.84

Weight (kDa)

8.45

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14370
fragaria_vesca	FvH4_6g52200 FvH4_6g52200 FvH4_6g52200
malus_domestica	MD09G1019800.v1.1 MD17G1020400.v1.1
prunus_persica	Prupe.3G296700_v2.0.a1
pyrus_communis	pycom111g01640 pycom17g01700
rosa_chinensis	RchiOBHm_Chr2g0173701
rosa_laevigata	RLG00000022215
rosa_multiflora	Rmu_co8469107.1_g000001 Rmu_sc0002538.1_g000006
rosa_roxburghii	Rroxscaffold_2G00078670 Rroxscaffold_2G00078690
rosa_rugosa	Rorug02G0572400
rosa_samantha	Rh2AG651300 Rh2BG661800 Rh2CG626700 Rh2CG626800 Rh2DG677000
rosa_wichuraiana	Rw2G053450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	628, 639
AccI	GTMKAC	1 cut(s)	327
AciI	CCGC	7 cut(s)	145, 273, 390, 429, 628, 639, 913
AclWI	GGATC	4 cut(s)	56, 186, 910, 923
AcsI	RAATTY	1 cut(s)	793
AfaI	GTAC	2 cut(s)	243, 519
AfiI	CCNNNNNNNGG	3 cut(s)	165, 544, 964
AflII	CTTAAG	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	655, 679
AhdI	GACNNNNNGTC	2 cut(s)	276, 484
AjiI	CACGTC	1 cut(s)	619
AjnI	CCWGG	2 cut(s)	164, 808
AluBI	AGCT	7 cut(s)	78, 140, 292, 583, 658, 745, 754
AluI	AGCT	7 cut(s)	78, 140, 292, 583, 658, 745, 754
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	4 cut(s)	56, 186, 910, 923
AoxI	GGCC	3 cut(s)	366, 406, 697
ApaI	GGGCCC	1 cut(s)	701
ApoI	RAATTY	1 cut(s)	793
ArsI	GACNNNNNNTTYG	2 cut(s)	634, 666
AspS9I	GGNCC	5 cut(s)	478, 642, 697, 698, 805
AsuC2I	CCSGG	2 cut(s)	131, 314
AsuHPI	GGTGA	2 cut(s)	134, 788
AsuII	TTCGAA	1 cut(s)	931
AvaII	GGWCC	3 cut(s)	478, 642, 805
BaeGI	GKGCMC	1 cut(s)	701
BamHI	GGATCC	1 cut(s)	915
BanII	GRGCYC	1 cut(s)	701
BccI	CCATC	3 cut(s)	707, 782, 835
BceAI	ACGGC	3 cut(s)	403, 421, 540
BciT130I	CCWGG	2 cut(s)	166, 810
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	2 cut(s)	131, 314
BcoDI	GTCTC	1 cut(s)	542
BfmI	CTRYAG	1 cut(s)	725
BfrI	CTTAAG	1 cut(s)	181
BglII	AGATCT	1 cut(s)	672
Bme1390I	CCNGG	4 cut(s)	131, 166, 314, 810
Bme18I	GGWCC	3 cut(s)	478, 642, 805
BmeRI	GACNNNNNGTC	2 cut(s)	276, 484
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	5 cut(s)	478, 642, 697, 698, 805
BmiI	GGNNCC	8 cut(s)	394, 536, 606, 643, 699, 806, 807, 917
BmrFI	CCNGG	4 cut(s)	131, 166, 314, 810
BmsI	GCATC	1 cut(s)	143
BplI	GAGNNNNNCTC	4 cut(s)	7, 39, 384, 416
Bpu14I	TTCGAA	1 cut(s)	931
BpuMI	CCSGG	2 cut(s)	131, 314
BsaBI	GATNNNNATC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	645, 808
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 614, 644
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 544, 964
Bse118I	RCCGGY	1 cut(s)	275
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	166, 810
BseDI	CCNNGG	2 cut(s)	645, 808
BseGI	GGATG	3 cut(s)	416, 788, 826
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	3 cut(s)	165, 544, 964
BseMII	CTCAG	1 cut(s)	396
BseRI	GAGGAG	8 cut(s)	401, 547, 614, 617, 638, 649, 683, 828
BseSI	GKGCMC	1 cut(s)	701
BshFI	GGCC	3 cut(s)	368, 408, 699
BsiSI	CCGG	3 cut(s)	131, 276, 314
BslFI	GGGAC	3 cut(s)	655, 731, 791
BslI	CCNNNNNNNGG	3 cut(s)	165, 544, 964
BsmAI	GTCTC	1 cut(s)	542
BsmBI	CGTCTC	1 cut(s)	542
BsmFI	GGGAC	3 cut(s)	655, 731, 791
BsmI	GAATGC	1 cut(s)	685
BsnI	GGCC	3 cut(s)	368, 408, 699
Bsp119I	TTCGAA	1 cut(s)	931
Bsp120I	GGGCCC	1 cut(s)	697
Bsp1286I	GDGCHC	1 cut(s)	701
Bsp143I	GATC	5 cut(s)	61, 191, 217, 672, 915
BspACI	CCGC	7 cut(s)	145, 273, 390, 429, 628, 639, 913
BspANI	GGCC	3 cut(s)	368, 408, 699
BspCNI	CTCAG	1 cut(s)	395
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	8 cut(s)	394, 536, 606, 643, 699, 806, 807, 917
BspPI	GGATC	4 cut(s)	56, 186, 910, 923
BspQI	GCTCTTC	1 cut(s)	908
BspT104I	TTCGAA	1 cut(s)	931
BspTI	CTTAAG	1 cut(s)	181
BsrBI	CCGCTC	2 cut(s)	628, 639
BsrFI	RCCGGY	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	645, 808
BssMI	GATC	5 cut(s)	61, 191, 217, 672, 915
BssT1I	CCWWGG	1 cut(s)	645
Bst2UI	CCWGG	2 cut(s)	166, 810
Bst4CI	ACNGT	2 cut(s)	241, 733
Bst6I	CTCTTC	6 cut(s)	8, 30, 305, 380, 908, 977
BstAFI	CTTAAG	1 cut(s)	181
BstBI	TTCGAA	1 cut(s)	931
BstDEI	CTNAG	2 cut(s)	382, 909
BstF5I	GGATG	3 cut(s)	416, 788, 826
BstKTI	GATC	5 cut(s)	64, 194, 220, 675, 918
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	5 cut(s)	61, 191, 217, 672, 915
BstMWI	GCNNNNNNNGC	4 cut(s)	211, 705, 751, 898
BstNI	CCWGG	2 cut(s)	166, 810
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	4 cut(s)	129, 164, 312, 808
BstSFI	CTRYAG	1 cut(s)	725
BstSLI	GKGCMC	1 cut(s)	701
BstX2I	RGATCY	2 cut(s)	672, 915
BstYI	RGATCY	2 cut(s)	672, 915
BsuRI	GGCC	3 cut(s)	368, 408, 699
BtgZI	GCGATG	1 cut(s)	542
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	3 cut(s)	416, 788, 826
CciI	TCATGA	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	5 cut(s)	478, 642, 697, 698, 805
Csp6I	GTAC	2 cut(s)	242, 518
CviAII	CATG	4 cut(s)	53, 215, 349, 758
CviQI	GTAC	2 cut(s)	242, 518
DdeI	CTNAG	2 cut(s)	382, 909
DpnI	GATC	5 cut(s)	63, 193, 219, 674, 917
DpnII	GATC	5 cut(s)	61, 191, 217, 672, 915
DriI	GACNNNNNGTC	2 cut(s)	276, 484
Eam1104I	CTCTTC	6 cut(s)	8, 30, 305, 380, 908, 977
Eam1105I	GACNNNNNGTC	2 cut(s)	276, 484
EarI	CTCTTC	6 cut(s)	8, 30, 305, 380, 908, 977
EciI	GGCGGA	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	645
Eco24I	GRGCYC	1 cut(s)	701
Eco47I	GGWCC	3 cut(s)	478, 642, 805
EcoO109I	RGGNCCY	3 cut(s)	642, 697, 805
EcoRII	CCWGG	2 cut(s)	164, 808
EcoT14I	CCWWGG	1 cut(s)	645
EcoT38I	GRGCYC	1 cut(s)	701
ErhI	CCWWGG	1 cut(s)	645
Esp3I	CGTCTC	1 cut(s)	542
FaeI	CATG	4 cut(s)	56, 218, 352, 761
FaqI	GGGAC	3 cut(s)	655, 731, 791
FatI	CATG	4 cut(s)	52, 214, 348, 757
FauI	CCCGC	1 cut(s)	632
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	327
FokI	GGATG	3 cut(s)	403, 795, 833
FriOI	GRGCYC	1 cut(s)	701
HaeIII	GGCC	3 cut(s)	368, 408, 699
HapII	CCGG	3 cut(s)	131, 276, 314
Hin1II	CATG	4 cut(s)	56, 218, 352, 761
HincII	GTYRAC	1 cut(s)	281
HindII	GTYRAC	1 cut(s)	281
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	6 cut(s)	16, 85, 248, 485, 719, 972
HpaII	CCGG	3 cut(s)	131, 276, 314
HphI	GGTGA	2 cut(s)	134, 788
Hpy166II	GTNNAC	4 cut(s)	20, 281, 328, 589
Hpy188I	TCNGA	6 cut(s)	191, 385, 469, 580, 691, 920
Hpy188III	TCNNGA	7 cut(s)	53, 153, 221, 614, 676, 737, 976
Hpy8I	GTNNAC	4 cut(s)	20, 281, 328, 589
Hpy99I	CGWCG	1 cut(s)	615
HpyAV	CCTTC	3 cut(s)	42, 589, 958
HpyCH4III	ACNGT	2 cut(s)	241, 733
HpyCH4IV	ACGT	2 cut(s)	363, 618
HpyCH4V	TGCA	4 cut(s)	6, 70, 352, 708
HpyF10VI	GCNNNNNNNGC	4 cut(s)	211, 705, 751, 898
HpyF3I	CTNAG	2 cut(s)	382, 909
HpySE526I	ACGT	2 cut(s)	363, 618
Hsp92II	CATG	4 cut(s)	56, 218, 352, 761
KflI	GGGWCCC	1 cut(s)	805
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	5 cut(s)	61, 191, 217, 672, 915
LguI	GCTCTTC	1 cut(s)	908
LmnI	GCTCC	8 cut(s)	210, 392, 534, 580, 604, 625, 636, 759
LweI	GCATC	1 cut(s)	143
MaeII	ACGT	2 cut(s)	363, 618
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	5 cut(s)	63, 193, 219, 674, 917
MbiI	CCGCTC	2 cut(s)	628, 639
MboI	GATC	5 cut(s)	61, 191, 217, 672, 915
MboII	GAAGA	8 cut(s)	17, 25, 116, 292, 367, 850, 895, 991
MflI	RGATCY	2 cut(s)	672, 915
MhlI	GDGCHC	1 cut(s)	701
MluCI	AATT	1 cut(s)	793
MlyI	GAGTC	3 cut(s)	25, 494, 713
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	2 cut(s)	57, 458
MspCI	CTTAAG	1 cut(s)	181
MspI	CCGG	3 cut(s)	131, 276, 314
MspR9I	CCNGG	4 cut(s)	131, 166, 314, 810
Mva1269I	GAATGC	1 cut(s)	685
MvaI	CCWGG	2 cut(s)	166, 810
MwoI	GCNNNNNNNGC	4 cut(s)	211, 705, 751, 898
NciI	CCSGG	2 cut(s)	131, 314
NdeII	GATC	5 cut(s)	61, 191, 217, 672, 915
NlaIII	CATG	4 cut(s)	56, 218, 352, 761
NlaIV	GGNNCC	8 cut(s)	394, 536, 606, 643, 699, 806, 807, 917
NmeAIII	GCCGAG	1 cut(s)	563
NmuCI	GTSAC	1 cut(s)	614
NspI	RCATGY	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	931
PagI	TCATGA	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	908
PctI	GAATGC	1 cut(s)	685
PfeI	GAWTC	3 cut(s)	85, 248, 972
PleI	GAGTC	3 cut(s)	24, 493, 713
PpsI	GAGTC	3 cut(s)	24, 493, 713
PpuMI	RGGWCCY	2 cut(s)	642, 805
Psp5II	RGGWCCY	2 cut(s)	642, 805
Psp6I	CCWGG	2 cut(s)	164, 808
PspGI	CCWGG	2 cut(s)	164, 808
PspN4I	GGNNCC	8 cut(s)	394, 536, 606, 643, 699, 806, 807, 917
PspOMI	GGGCCC	1 cut(s)	697
PspPI	GGNCC	5 cut(s)	478, 642, 697, 698, 805
PspPPI	RGGWCCY	2 cut(s)	642, 805
PsuI	RGATCY	2 cut(s)	672, 915
RsaI	GTAC	2 cut(s)	243, 519
RsaNI	GTAC	2 cut(s)	242, 518
RseI	CAYNNNNRTG	2 cut(s)	57, 458
SapI	GCTCTTC	1 cut(s)	908
SaqAI	TTAA	1 cut(s)	182
Sau3AI	GATC	5 cut(s)	61, 191, 217, 672, 915
Sau96I	GGNCC	5 cut(s)	478, 642, 697, 698, 805
SchI	GAGTC	3 cut(s)	25, 494, 713
ScrFI	CCNGG	4 cut(s)	131, 166, 314, 810
SduI	GDGCHC	1 cut(s)	701
SfaNI	GCATC	1 cut(s)	143
SfcI	CTRYAG	1 cut(s)	725
SfuI	TTCGAA	1 cut(s)	931
SinI	GGWCC	3 cut(s)	478, 642, 805
SmiMI	CAYNNNNRTG	2 cut(s)	57, 458
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	1 cut(s)	793
SsiI	CCGC	7 cut(s)	145, 273, 390, 429, 628, 639, 913
StyD4I	CCNGG	4 cut(s)	129, 164, 312, 808
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	2 cut(s)	241, 733
TaiI	ACGT	2 cut(s)	366, 621
TaqI	TCGA	4 cut(s)	251, 446, 931, 970
TaqII	GACCGA	1 cut(s)	486
TasI	AATT	1 cut(s)	793
TfiI	GAWTC	3 cut(s)	85, 248, 972
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	614
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	2 cut(s)	77, 977
TspGWI	ACGGA	1 cut(s)	535
Vha464I	CTTAAG	1 cut(s)	181
VpaK11BI	GGWCC	3 cut(s)	478, 642, 805
XapI	RAATTY	1 cut(s)	793
XceI	RCATGY	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.