Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009406

Physical Location & Seq

Genomic Coordinates Forward (+)

80041457 .. 80045631

Gene Structure 4175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG626700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTGCCACCACAACAAGAACAGTCCACCTCCGAATCATCATCACGTGAAATTTCAAACCAGGTCGATTTCTATGATGAAGATGATCAAGGAGGAGGAAGAAGAAGAAATCAAGCCGGTAAAGAGAGCTTCACTGAAACCGAAGCGATCGGCGGCGGCGGCGCGGAAATCGAGGAGCCGGAGAAGAAAGCCGAAGTACTTGAGCCTCCGCTCGCCGCGGCTCTCCGCCCGAAACGACGTCGTCGCCGCCTCCTCCGCCGATACGGATTCCAAGATGACTGCTGCTACTACTACTACTACGGCGGTGACGCGCCGCGGCCACCAGCTTAATTTGTTTCCGCTGCATCCGGAGCTGAACGCGGCGGAGGCGGATCACCAGTCCGACGACAACGTGGCTCTGCTGTTCGAATCCGACGGCGGAGCCACTCTCCACGGGCTGCTCACCTCCGCCGACACGGCCACCACGACGACGACGTCGACAATGTCGTCCGATCACGACCAGGCCGAGTCCAGTTACGGCTACCGCCGCGGAATGGAACGCGGCGACGATATCGTACGGTCGGCGATGAGGGGGAGCGGAGGAGATCGGAGCGTCGAGAAGTGGGTGTGTTACTCGGAGCTGGTGAAGGAGGAGGTCGAGTTAACGGCGACGACGACGAGCTCGGCGAGCACGTGTTGCAGCGTCGGCGATGATCGGAAAGGTCATCGGGATCGACGGCTGGCGTTGAAGCTTGACTATGAGGAGGTCTTGAATGCTTGGTCCGATAAGGGGTCGCTGTACATTAAAACCGAAGACGGCGAGCCGCCGCCGCAGACGGTGCCGGACTTGCTTCAGGATCAGCTCTTTCACCACCTCCATGATTCTACTGCCAATATTGAGGATTTATGGACGGTGCCTGAAGAGAGCGGTAGCGGTAGCGGTAGCTTGGAGAGGAAGATTCAAAGACAGGCGAGTTTATTGAGATACAAGCGGAAAAGGGAGAACAGACTGTTTTCTAAGCGGATTCGGTATGAAGTTCGGAAGCTAAATGCCGAGAAACGACCCCGTATGAAGGGTCGGTTTGTGAAGAGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

358

Amino Acids

40.29

Weight (kDa)

9.42

Isoelectric Point (pI)

58.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	315 - 357	3.6e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14370
fragaria_vesca	FvH4_6g52200 FvH4_6g52200 FvH4_6g52200
malus_domestica	MD09G1019800.v1.1 MD17G1020400.v1.1
prunus_persica	Prupe.3G296700_v2.0.a1
pyrus_communis	pycom111g01640 pycom17g01700
rosa_chinensis	RchiOBHm_Chr2g0173701
rosa_laevigata	RLG00000022215
rosa_multiflora	Rmu_co8469107.1_g000001 Rmu_sc0002538.1_g000006
rosa_roxburghii	Rroxscaffold_2G00078670 Rroxscaffold_2G00078690
rosa_rugosa	Rorug02G0572400
rosa_samantha	Rh2AG651300 Rh2BG661800 Rh2CG626700 Rh2CG626800 Rh2DG677000
rosa_wichuraiana	Rw2G053450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	472, 484
AatII	GACGTC	2 cut(s)	240, 476
AccB1I	GGYRCC	2 cut(s)	817, 892
AccBSI	CCGCTC	3 cut(s)	210, 576, 906
AccI	GTMKAC	1 cut(s)	476
AccII	CGCG	7 cut(s)	163, 217, 310, 315, 359, 528, 540
AccIII	TCCGGA	1 cut(s)	346
AclWI	GGATC	3 cut(s)	378, 717, 843
AcoI	YGGCCR	2 cut(s)	316, 456
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	2 cut(s)	815, 918
AcvI	CACGTG	2 cut(s)	46, 672
AcyI	GRCGYC	2 cut(s)	237, 473
AfaI	GTAC	3 cut(s)	197, 555, 779
AfiI	CCNNNNNNNGG	3 cut(s)	532, 768, 1051
AflIII	ACRYGT	1 cut(s)	671
AgsI	TTSAA	4 cut(s)	56, 727, 751, 941
AjnI	CCWGG	2 cut(s)	59, 498
AluBI	AGCT	9 cut(s)	128, 325, 352, 619, 660, 730, 841, 924, 1024
AluI	AGCT	9 cut(s)	128, 325, 352, 619, 660, 730, 841, 924, 1024
Alw21I	GWGCWC	2 cut(s)	662, 671
AlwI	GGATC	3 cut(s)	378, 717, 843
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	3 cut(s)	316, 456, 501
ApeKI	GCWGC	4 cut(s)	281, 340, 436, 678
ApoI	RAATTY	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	163, 312
AspS9I	GGNCC	1 cut(s)	759
AsuHPI	GGTGA	5 cut(s)	316, 365, 433, 634, 839
AsuII	TTCGAA	1 cut(s)	405
AvaII	GGWCC	1 cut(s)	759
BanI	GGYRCC	2 cut(s)	817, 892
BanII	GRGCYC	1 cut(s)	662
BbrPI	CACGTG	2 cut(s)	46, 672
BbsI	GAAGAC	1 cut(s)	798
Bbv12I	GWGCWC	2 cut(s)	662, 671
BbvI	GCAGC	4 cut(s)	268, 327, 423, 690
BceAI	ACGGC	7 cut(s)	315, 430, 471, 532, 660, 731, 811
BciT130I	CCWGG	2 cut(s)	61, 500
BclI	TGATCA	1 cut(s)	84
BglI	GCCNNNNNGGC	1 cut(s)	455
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	2 cut(s)	61, 500
Bme18I	GGWCC	1 cut(s)	759
BmgT120I	GGNCC	1 cut(s)	759
BmiI	GGNNCC	4 cut(s)	176, 421, 819, 894
BmrFI	CCNGG	2 cut(s)	61, 500
BmsI	GCATC	1 cut(s)	352
BpiI	GAAGAC	1 cut(s)	798
BplI	GAGNNNNNCTC	2 cut(s)	411, 443
Bpu14I	TTCGAA	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	220
BsaAI	YACGTR	2 cut(s)	46, 672
BsaHI	GRCGYC	2 cut(s)	237, 473
BsaJI	CCNNGG	4 cut(s)	215, 313, 430, 526
BsaWI	WCCGGW	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	3 cut(s)	532, 768, 1051
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	376, 510
BseAI	TCCGGA	1 cut(s)	346
BseBI	CCWGG	2 cut(s)	61, 500
BseDI	CCNNGG	4 cut(s)	215, 313, 430, 526
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	3 cut(s)	532, 768, 1051
BseNI	ACTGG	2 cut(s)	376, 510
BseRI	GAGGAG	6 cut(s)	107, 187, 241, 594, 644, 755
BseXI	GCAGC	4 cut(s)	268, 327, 423, 690
Bsh1236I	CGCG	7 cut(s)	163, 217, 310, 315, 359, 528, 540
Bsh1285I	CGRYCG	2 cut(s)	149, 560
BshFI	GGCC	3 cut(s)	318, 458, 503
BshNI	GGYRCC	2 cut(s)	817, 892
BsiEI	CGRYCG	2 cut(s)	149, 560
BsiHKAI	GWGCWC	2 cut(s)	662, 671
BsiSI	CCGG	4 cut(s)	116, 178, 347, 821
BsiWI	CGTACG	1 cut(s)	553
BslI	CCNNNNNNNGG	3 cut(s)	532, 768, 1051
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	3 cut(s)	318, 458, 503
Bsp119I	TTCGAA	1 cut(s)	405
Bsp1286I	GDGCHC	2 cut(s)	662, 671
Bsp13I	TCCGGA	1 cut(s)	346
Bsp1407I	TGTACA	1 cut(s)	777
Bsp143I	GATC	8 cut(s)	84, 146, 370, 490, 583, 691, 709, 835
BspANI	GGCC	3 cut(s)	318, 458, 503
BspEI	TCCGGA	1 cut(s)	346
BspFNI	CGCG	7 cut(s)	163, 217, 310, 315, 359, 528, 540
BspLI	GGNNCC	4 cut(s)	176, 421, 819, 894
BspPI	GGATC	3 cut(s)	378, 717, 843
BspT104I	TTCGAA	1 cut(s)	405
BspT107I	GGYRCC	2 cut(s)	817, 892
BsrBI	CCGCTC	3 cut(s)	210, 576, 906
BsrFI	RCCGGY	1 cut(s)	115
BsrGI	TGTACA	1 cut(s)	777
BsrI	ACTGG	2 cut(s)	376, 510
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	4 cut(s)	215, 313, 430, 526
BssMI	GATC	8 cut(s)	84, 146, 370, 490, 583, 691, 709, 835
BssNI	GRCGYC	2 cut(s)	237, 473
Bst2UI	CCWGG	2 cut(s)	61, 500
Bst4CI	ACNGT	5 cut(s)	23, 558, 817, 892, 990
Bst6I	CTCTTC	2 cut(s)	894, 1061
BstACI	GRCGYC	2 cut(s)	237, 473
BstAPI	GCANNNNNTGC	2 cut(s)	675, 817
BstAUI	TGTACA	1 cut(s)	777
BstBAI	YACGTR	2 cut(s)	46, 672
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	4 cut(s)	212, 667, 720, 800
BstDEI	CTNAG	1 cut(s)	996
BstDSI	CCRYGG	4 cut(s)	215, 313, 430, 526
BstF5I	GGATG	1 cut(s)	343
BstFNI	CGCG	7 cut(s)	163, 217, 310, 315, 359, 528, 540
BstHHI	GCGC	2 cut(s)	163, 312
BstKTI	GATC	8 cut(s)	87, 149, 373, 493, 586, 694, 712, 838
BstMBI	GATC	8 cut(s)	84, 146, 370, 490, 583, 691, 709, 835
BstMCI	CGRYCG	2 cut(s)	149, 560
BstNI	CCWGG	2 cut(s)	61, 500
BstSCI	CCNGG	2 cut(s)	59, 498
BstUI	CGCG	7 cut(s)	163, 217, 310, 315, 359, 528, 540
BstV1I	GCAGC	4 cut(s)	268, 327, 423, 690
BstV2I	GAAGAC	1 cut(s)	798
BsuRI	GGCC	3 cut(s)	318, 458, 503
BtgI	CCRYGG	4 cut(s)	215, 313, 430, 526
BtgZI	GCGATG	2 cut(s)	578, 702
BtsCI	GGATG	1 cut(s)	343
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	4 cut(s)	212, 667, 720, 800
CfoI	GCGC	2 cut(s)	163, 312
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	759
Cfr42I	CCGCGG	3 cut(s)	218, 316, 529
CseI	GACGC	3 cut(s)	316, 580, 670
CsiI	ACCWGGT	1 cut(s)	59
Csp6I	GTAC	3 cut(s)	196, 554, 778
CviAII	CATG	1 cut(s)	857
CviQI	GTAC	3 cut(s)	196, 554, 778
DdeI	CTNAG	1 cut(s)	996
DpnI	GATC	8 cut(s)	86, 148, 372, 492, 585, 693, 711, 837
DpnII	GATC	8 cut(s)	84, 146, 370, 490, 583, 691, 709, 835
DrdI	GACNNNNNNGTC	2 cut(s)	472, 484
DseDI	GACNNNNNNGTC	2 cut(s)	472, 484
EaeI	YGGCCR	2 cut(s)	316, 456
Eam1104I	CTCTTC	2 cut(s)	894, 1061
EarI	CTCTTC	2 cut(s)	894, 1061
EciI	GGCGGA	6 cut(s)	214, 244, 377, 383, 432, 436
Ecl136II	GAGCTC	1 cut(s)	660
Eco24I	GRGCYC	1 cut(s)	662
Eco32I	GATATC	1 cut(s)	550
Eco47I	GGWCC	1 cut(s)	759
Eco53kI	GAGCTC	1 cut(s)	660
Eco57I	CTGAAG	2 cut(s)	815, 918
Eco72I	CACGTG	2 cut(s)	46, 672
EcoICRI	GAGCTC	1 cut(s)	660
EcoRII	CCWGG	2 cut(s)	59, 498
EcoRV	GATATC	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	662
FaeI	CATG	1 cut(s)	860
FaiI	YATR	6 cut(s)	74, 738, 858, 886, 1011, 1049
FatI	CATG	1 cut(s)	856
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	476
FokI	GGATG	1 cut(s)	330
FriOI	GRGCYC	1 cut(s)	662
GlaI	GCGC	2 cut(s)	162, 311
HaeIII	GGCC	3 cut(s)	318, 458, 503
HapII	CCGG	4 cut(s)	116, 178, 347, 821
HgaI	GACGC	3 cut(s)	316, 580, 670
HhaI	GCGC	2 cut(s)	163, 312
Hin1I	GRCGYC	2 cut(s)	237, 473
Hin1II	CATG	1 cut(s)	860
Hin6I	GCGC	2 cut(s)	161, 310
HinP1I	GCGC	2 cut(s)	161, 310
HincII	GTYRAC	2 cut(s)	477, 642
HindII	GTYRAC	2 cut(s)	477, 642
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	7 cut(s)	34, 266, 407, 506, 860, 937, 1003
HpaI	GTTAAC	1 cut(s)	642
HpaII	CCGG	4 cut(s)	116, 178, 347, 821
HphI	GGTGA	5 cut(s)	316, 365, 433, 634, 839
Hpy166II	GTNNAC	3 cut(s)	26, 477, 642
Hpy188I	TCNGA	9 cut(s)	33, 382, 412, 490, 588, 616, 696, 763, 1020
Hpy188III	TCNNGA	6 cut(s)	347, 494, 595, 707, 748, 833
Hpy8I	GTNNAC	3 cut(s)	26, 477, 642
HpyAV	CCTTC	2 cut(s)	619, 1045
HpyCH4III	ACNGT	5 cut(s)	23, 558, 817, 892, 990
HpyCH4IV	ACGT	5 cut(s)	45, 237, 390, 473, 671
HpyCH4V	TGCA	2 cut(s)	343, 678
HpyF3I	CTNAG	1 cut(s)	996
HpySE526I	ACGT	5 cut(s)	45, 237, 390, 473, 671
Hsp92I	GRCGYC	2 cut(s)	237, 473
Hsp92II	CATG	1 cut(s)	860
HspAI	GCGC	2 cut(s)	161, 310
Kpn2I	TCCGGA	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	84
KspAI	GTTAAC	1 cut(s)	642
KspI	CCGCGG	3 cut(s)	218, 316, 529
Kzo9I	GATC	8 cut(s)	84, 146, 370, 490, 583, 691, 709, 835
LmnI	GCTCC	6 cut(s)	174, 349, 419, 573, 588, 616
Lsp1109I	GCAGC	4 cut(s)	268, 327, 423, 690
LweI	GCATC	1 cut(s)	352
MabI	ACCWGGT	1 cut(s)	59
MaeII	ACGT	5 cut(s)	45, 237, 390, 473, 671
MaeIII	GTNAC	3 cut(s)	304, 512, 608
MalI	GATC	8 cut(s)	86, 148, 372, 492, 585, 693, 711, 837
MbiI	CCGCTC	3 cut(s)	210, 576, 906
MboI	GATC	8 cut(s)	84, 146, 370, 490, 583, 691, 709, 835
MboII	GAAGA	8 cut(s)	91, 110, 113, 116, 195, 803, 911, 946
MhlI	GDGCHC	2 cut(s)	662, 671
MluCI	AATT	2 cut(s)	50, 328
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	2 cut(s)	405, 435
MroI	TCCGGA	1 cut(s)	346
MseI	TTAA	3 cut(s)	327, 641, 783
MslI	CAYNNNNRTG	1 cut(s)	855
MspA1I	CMGCKG	4 cut(s)	217, 315, 340, 528
MspI	CCGG	4 cut(s)	116, 178, 347, 821
MspR9I	CCNGG	2 cut(s)	61, 500
Mva1269I	GAATGC	1 cut(s)	757
MvaI	CCWGG	2 cut(s)	61, 500
MvnI	CGCG	7 cut(s)	163, 217, 310, 315, 359, 528, 540
NdeII	GATC	8 cut(s)	84, 146, 370, 490, 583, 691, 709, 835
NlaIII	CATG	1 cut(s)	860
NlaIV	GGNNCC	4 cut(s)	176, 421, 819, 894
NmeAIII	GCCGAG	3 cut(s)	529, 641, 1057
NmuCI	GTSAC	1 cut(s)	304
NspV	TTCGAA	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	8 cut(s)	461, 470, 473, 482, 501, 650, 662, 668
PctI	GAATGC	1 cut(s)	757
PfeI	GAWTC	6 cut(s)	34, 266, 407, 860, 937, 1003
Pfl23II	CGTACG	1 cut(s)	553
PflFI	GACNNNGTC	3 cut(s)	239, 472, 481
Ple19I	CGATCG	1 cut(s)	149
PleI	GAGTC	1 cut(s)	514
PmaCI	CACGTG	2 cut(s)	46, 672
PmlI	CACGTG	2 cut(s)	46, 672
PpsI	GAGTC	1 cut(s)	514
Ppu21I	YACGTR	2 cut(s)	46, 672
Psp124BI	GAGCTC	1 cut(s)	662
Psp6I	CCWGG	2 cut(s)	59, 498
PspCI	CACGTG	2 cut(s)	46, 672
PspGI	CCWGG	2 cut(s)	59, 498
PspLI	CGTACG	1 cut(s)	553
PspN4I	GGNNCC	4 cut(s)	176, 421, 819, 894
PspPI	GGNCC	1 cut(s)	759
PsyI	GACNNNGTC	3 cut(s)	239, 472, 481
PvuI	CGATCG	1 cut(s)	149
RsaI	GTAC	3 cut(s)	197, 555, 779
RsaNI	GTAC	3 cut(s)	196, 554, 778
RseI	CAYNNNNRTG	1 cut(s)	855
SacI	GAGCTC	1 cut(s)	662
SacII	CCGCGG	3 cut(s)	218, 316, 529
SalI	GTCGAC	1 cut(s)	475
SaqAI	TTAA	3 cut(s)	327, 641, 783
Sau3AI	GATC	8 cut(s)	84, 146, 370, 490, 583, 691, 709, 835
Sau96I	GGNCC	1 cut(s)	759
ScaI	AGTACT	1 cut(s)	197
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	2 cut(s)	61, 500
SduI	GDGCHC	2 cut(s)	662, 671
SexAI	ACCWGGT	1 cut(s)	59
SfaNI	GCATC	1 cut(s)	352
Sfr303I	CCGCGG	3 cut(s)	218, 316, 529
SfuI	TTCGAA	1 cut(s)	405
SgrBI	CCGCGG	3 cut(s)	218, 316, 529
SinI	GGWCC	1 cut(s)	759
SmiMI	CAYNNNNRTG	1 cut(s)	855
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	2 cut(s)	50, 328
SspI	AATATT	1 cut(s)	874
SstI	GAGCTC	1 cut(s)	662
StyD4I	CCNGG	2 cut(s)	59, 498
TaaI	ACNGT	5 cut(s)	23, 558, 817, 892, 990
TaiI	ACGT	5 cut(s)	48, 240, 393, 476, 674
TaqI	TCGA	7 cut(s)	65, 170, 405, 476, 594, 636, 712
TasI	AATT	2 cut(s)	50, 328
TatI	WGTACW	2 cut(s)	195, 777
TfiI	GAWTC	6 cut(s)	34, 266, 407, 860, 937, 1003
Tru1I	TTAA	3 cut(s)	327, 641, 783
Tru9I	TTAA	3 cut(s)	327, 641, 783
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	4 cut(s)	281, 340, 436, 678
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	3 cut(s)	92, 1026, 1064
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	138
Tth111I	GACNNNGTC	3 cut(s)	239, 472, 481
VpaK11BI	GGWCC	1 cut(s)	759
XapI	RAATTY	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	476
ZraI	GACGTC	2 cut(s)	238, 474
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.