Rh2DG677000

Zinc finger protein CONSTANS-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009406
Physical Location & Seq
Forward (+)
89763237 .. 89764647
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG677000.1

Sequence Viewer

Length: 1005 bp
ATGATGAAGATGATCAAGGAGGAGGAAGAAGAAGAAATCAAGCCGGTAAAGAGAGCTTCACTGAAACCGAAGCGATCGGCGGCGGCGGCGCGGAAATCGAGGAGCCGGAGAAGAAAGCCGAAGTACTTGAGCCTCCGCTCGCCGCGGCTCTCCGCCCGAAACGACGTCGTCGCCGCCTCCTCCGCCGATACGGATTCCAAGATGACTGCTGCTACTACTACTACTACGGCGGTGACGCGCCGCGGCCACCAGCTTAATTTGTTTCCGCTGCATCCGGAGCTGAACGCGGCGGAGGCGGATCACCAGTCCGACGACAACGTGGCTCTGCTGTTCGAATCCGACGGCGGAGCCACTCTCCACGGGCTGCTCACCTCCGCCGACACGGCCACCACGACGACGACGTCGACAATGTCGTCCGATCACGACCAGGCCGAGTCCAGTTACGGCTACCGCCGCGGAATGGAACGCGGCGACGATATCGTACGGTCGGCGATGAGGGGGAGCGGAGGAGATCGGAGCGTCGAGAAGTGGGTGTGTTACTCGGAGCTGGTGAAGGAGGAGGTCGAGTTAACGGCGACGACGACGAGCTCGGCGAGCACGTGTTGCAGCGTCGGCGATGATCGGAAAGGTCATCGGGATCGACGGCTGGCGTTGAAGCTTGACTATGAGGAGGTCTTGAATGCTTGGTCCGATAAGGGGTCGCTGTACATTAAAACCGAAGACGGCGAGCCGCCGCCGCAGACGGTGCCGGACTTGCTTCAGGATCAGCTCTTTCACCACCTCCATGATTCTACTGCCAATATTGAGGATTTATGGACGGTGCCTGAAGAGAGCGGTAGCGGTAGCGGTAGCTTGGAGAGGAAGATTCAAAGACAGGCGAGTTTATTGAGATACAAGCGGAAAAGGGAGAACAGACTGTTTTCTAAGCGGATTCGGTATGAAGTTCGGAAGCTAAATGCCGAGAAACGACCCCGTATGAAGGGTCGGTTTGTGAAGAGTAGTTGA

Protein Analysis

334

Amino Acids

37.47

Weight (kDa)

9.27

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 291 - 333 3.3e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 400, 412
AatII GACGTC 2 cut(s) 168, 404
AccB1I GGYRCC 2 cut(s) 745, 820
AccBSI CCGCTC 3 cut(s) 138, 504, 834
AccI GTMKAC 1 cut(s) 404
AccII CGCG 7 cut(s) 91, 145, 238, 243, 287, 456, 468
AccIII TCCGGA 1 cut(s) 274
AclWI GGATC 3 cut(s) 306, 645, 771
AcoI YGGCCR 2 cut(s) 244, 384
AcuI CTGAAG 2 cut(s) 743, 846
AcvI CACGTG 1 cut(s) 600
AcyI GRCGYC 2 cut(s) 165, 401
AfaI GTAC 3 cut(s) 125, 483, 707
AfiI CCNNNNNNNGG 3 cut(s) 460, 696, 979
AflIII ACRYGT 1 cut(s) 599
AgsI TTSAA 3 cut(s) 655, 679, 869
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 9 cut(s) 56, 253, 280, 547, 588, 658, 769, 852, 952
AluI AGCT 9 cut(s) 56, 253, 280, 547, 588, 658, 769, 852, 952
Alw21I GWGCWC 2 cut(s) 590, 599
AlwI GGATC 3 cut(s) 306, 645, 771
Aor13HI TCCGGA 1 cut(s) 274
AoxI GGCC 3 cut(s) 244, 384, 429
ApeKI GCWGC 4 cut(s) 209, 268, 364, 606
AspLEI GCGC 2 cut(s) 91, 240
AspS9I GGNCC 1 cut(s) 687
AsuHPI GGTGA 5 cut(s) 244, 293, 361, 562, 767
AsuII TTCGAA 1 cut(s) 333
AvaII GGWCC 1 cut(s) 687
BanI GGYRCC 2 cut(s) 745, 820
BanII GRGCYC 1 cut(s) 590
BbrPI CACGTG 1 cut(s) 600
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 2 cut(s) 590, 599
BbvI GCAGC 4 cut(s) 196, 255, 351, 618
BceAI ACGGC 7 cut(s) 243, 358, 399, 460, 588, 659, 739
BciT130I CCWGG 1 cut(s) 428
BclI TGATCA 1 cut(s) 12
BglI GCCNNNNNGGC 1 cut(s) 383
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 428
Bme18I GGWCC 1 cut(s) 687
BmgT120I GGNCC 1 cut(s) 687
BmiI GGNNCC 4 cut(s) 104, 349, 747, 822
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 726
BplI GAGNNNNNCTC 2 cut(s) 339, 371
Bpu14I TTCGAA 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 148
BsaAI YACGTR 1 cut(s) 600
BsaHI GRCGYC 2 cut(s) 165, 401
BsaJI CCNNGG 4 cut(s) 143, 241, 358, 454
BsaWI WCCGGW 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 551, 581
Bsc4I CCNNNNNNNGG 3 cut(s) 460, 696, 979
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 304, 438
BseAI TCCGGA 1 cut(s) 274
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 4 cut(s) 143, 241, 358, 454
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 3 cut(s) 460, 696, 979
BseNI ACTGG 2 cut(s) 304, 438
BseRI GAGGAG 6 cut(s) 35, 115, 169, 522, 572, 683
BseXI GCAGC 4 cut(s) 196, 255, 351, 618
Bsh1236I CGCG 7 cut(s) 91, 145, 238, 243, 287, 456, 468
Bsh1285I CGRYCG 2 cut(s) 77, 488
BshFI GGCC 3 cut(s) 246, 386, 431
BshNI GGYRCC 2 cut(s) 745, 820
BsiEI CGRYCG 2 cut(s) 77, 488
BsiHKAI GWGCWC 2 cut(s) 590, 599
BsiSI CCGG 4 cut(s) 44, 106, 275, 749
BsiWI CGTACG 1 cut(s) 481
BslI CCNNNNNNNGG 3 cut(s) 460, 696, 979
BsmI GAATGC 1 cut(s) 685
BsnI GGCC 3 cut(s) 246, 386, 431
Bsp119I TTCGAA 1 cut(s) 333
Bsp1286I GDGCHC 2 cut(s) 590, 599
Bsp13I TCCGGA 1 cut(s) 274
Bsp1407I TGTACA 1 cut(s) 705
Bsp143I GATC 8 cut(s) 12, 74, 298, 418, 511, 619, 637, 763
BspANI GGCC 3 cut(s) 246, 386, 431
BspEI TCCGGA 1 cut(s) 274
BspFNI CGCG 7 cut(s) 91, 145, 238, 243, 287, 456, 468
BspLI GGNNCC 4 cut(s) 104, 349, 747, 822
BspPI GGATC 3 cut(s) 306, 645, 771
BspT104I TTCGAA 1 cut(s) 333
BspT107I GGYRCC 2 cut(s) 745, 820
BsrBI CCGCTC 3 cut(s) 138, 504, 834
BsrFI RCCGGY 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 2 cut(s) 304, 438
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 4 cut(s) 143, 241, 358, 454
BssMI GATC 8 cut(s) 12, 74, 298, 418, 511, 619, 637, 763
BssNI GRCGYC 2 cut(s) 165, 401
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 4 cut(s) 486, 745, 820, 918
Bst6I CTCTTC 2 cut(s) 822, 989
BstACI GRCGYC 2 cut(s) 165, 401
BstAPI GCANNNNNTGC 2 cut(s) 603, 745
BstAUI TGTACA 1 cut(s) 705
BstBAI YACGTR 1 cut(s) 600
BstBI TTCGAA 1 cut(s) 333
BstC8I GCNNGC 4 cut(s) 140, 595, 648, 728
BstDEI CTNAG 1 cut(s) 924
BstDSI CCRYGG 4 cut(s) 143, 241, 358, 454
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 7 cut(s) 91, 145, 238, 243, 287, 456, 468
BstHHI GCGC 2 cut(s) 91, 240
BstKTI GATC 8 cut(s) 15, 77, 301, 421, 514, 622, 640, 766
BstMBI GATC 8 cut(s) 12, 74, 298, 418, 511, 619, 637, 763
BstMCI CGRYCG 2 cut(s) 77, 488
BstNI CCWGG 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 426
BstUI CGCG 7 cut(s) 91, 145, 238, 243, 287, 456, 468
BstV1I GCAGC 4 cut(s) 196, 255, 351, 618
BstV2I GAAGAC 1 cut(s) 726
BsuRI GGCC 3 cut(s) 246, 386, 431
BtgI CCRYGG 4 cut(s) 143, 241, 358, 454
BtgZI GCGATG 2 cut(s) 506, 630
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 4 cut(s) 140, 595, 648, 728
CfoI GCGC 2 cut(s) 91, 240
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 687
Cfr42I CCGCGG 3 cut(s) 146, 244, 457
CseI GACGC 3 cut(s) 244, 508, 598
Csp6I GTAC 3 cut(s) 124, 482, 706
CviAII CATG 1 cut(s) 785
CviQI GTAC 3 cut(s) 124, 482, 706
DdeI CTNAG 1 cut(s) 924
DpnI GATC 8 cut(s) 14, 76, 300, 420, 513, 621, 639, 765
DpnII GATC 8 cut(s) 12, 74, 298, 418, 511, 619, 637, 763
DrdI GACNNNNNNGTC 2 cut(s) 400, 412
DseDI GACNNNNNNGTC 2 cut(s) 400, 412
EaeI YGGCCR 2 cut(s) 244, 384
Eam1104I CTCTTC 2 cut(s) 822, 989
EarI CTCTTC 2 cut(s) 822, 989
EciI GGCGGA 6 cut(s) 142, 172, 305, 311, 360, 364
Ecl136II GAGCTC 1 cut(s) 588
Eco24I GRGCYC 1 cut(s) 590
Eco32I GATATC 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 687
Eco53kI GAGCTC 1 cut(s) 588
Eco57I CTGAAG 2 cut(s) 743, 846
Eco72I CACGTG 1 cut(s) 600
EcoICRI GAGCTC 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 426
EcoRV GATATC 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 590
FaeI CATG 1 cut(s) 788
FaiI YATR 5 cut(s) 666, 786, 814, 939, 977
FatI CATG 1 cut(s) 784
FbaI TGATCA 1 cut(s) 12
FblI GTMKAC 1 cut(s) 404
FokI GGATG 1 cut(s) 258
FriOI GRGCYC 1 cut(s) 590
GlaI GCGC 2 cut(s) 90, 239
HaeIII GGCC 3 cut(s) 246, 386, 431
HapII CCGG 4 cut(s) 44, 106, 275, 749
HgaI GACGC 3 cut(s) 244, 508, 598
HhaI GCGC 2 cut(s) 91, 240
Hin1I GRCGYC 2 cut(s) 165, 401
Hin1II CATG 1 cut(s) 788
Hin6I GCGC 2 cut(s) 89, 238
HinP1I GCGC 2 cut(s) 89, 238
HincII GTYRAC 2 cut(s) 405, 570
HindII GTYRAC 2 cut(s) 405, 570
HindIII AAGCTT 1 cut(s) 656
HinfI GANTC 6 cut(s) 194, 335, 434, 788, 865, 931
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 4 cut(s) 44, 106, 275, 749
HphI GGTGA 5 cut(s) 244, 293, 361, 562, 767
Hpy166II GTNNAC 2 cut(s) 405, 570
Hpy188I TCNGA 8 cut(s) 310, 340, 418, 516, 544, 624, 691, 948
Hpy188III TCNNGA 6 cut(s) 275, 422, 523, 635, 676, 761
Hpy8I GTNNAC 2 cut(s) 405, 570
HpyAV CCTTC 2 cut(s) 547, 973
HpyCH4III ACNGT 4 cut(s) 486, 745, 820, 918
HpyCH4IV ACGT 4 cut(s) 165, 318, 401, 599
HpyCH4V TGCA 2 cut(s) 271, 606
HpyF3I CTNAG 1 cut(s) 924
HpySE526I ACGT 4 cut(s) 165, 318, 401, 599
Hsp92I GRCGYC 2 cut(s) 165, 401
Hsp92II CATG 1 cut(s) 788
HspAI GCGC 2 cut(s) 89, 238
Kpn2I TCCGGA 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 12
KspAI GTTAAC 1 cut(s) 570
KspI CCGCGG 3 cut(s) 146, 244, 457
Kzo9I GATC 8 cut(s) 12, 74, 298, 418, 511, 619, 637, 763
LmnI GCTCC 6 cut(s) 102, 277, 347, 501, 516, 544
Lsp1109I GCAGC 4 cut(s) 196, 255, 351, 618
LweI GCATC 1 cut(s) 280
MaeII ACGT 4 cut(s) 165, 318, 401, 599
MaeIII GTNAC 3 cut(s) 232, 440, 536
MalI GATC 8 cut(s) 14, 76, 300, 420, 513, 621, 639, 765
MbiI CCGCTC 3 cut(s) 138, 504, 834
MboI GATC 8 cut(s) 12, 74, 298, 418, 511, 619, 637, 763
MboII GAAGA 8 cut(s) 19, 38, 41, 44, 123, 731, 839, 874
MhlI GDGCHC 2 cut(s) 590, 599
MluCI AATT 1 cut(s) 256
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 2 cut(s) 333, 363
MroI TCCGGA 1 cut(s) 274
MseI TTAA 3 cut(s) 255, 569, 711
MslI CAYNNNNRTG 1 cut(s) 783
MspA1I CMGCKG 4 cut(s) 145, 243, 268, 456
MspI CCGG 4 cut(s) 44, 106, 275, 749
MspR9I CCNGG 1 cut(s) 428
Mva1269I GAATGC 1 cut(s) 685
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 7 cut(s) 91, 145, 238, 243, 287, 456, 468
NdeII GATC 8 cut(s) 12, 74, 298, 418, 511, 619, 637, 763
NlaIII CATG 1 cut(s) 788
NlaIV GGNNCC 4 cut(s) 104, 349, 747, 822
NmeAIII GCCGAG 3 cut(s) 457, 569, 985
NmuCI GTSAC 1 cut(s) 232
NspV TTCGAA 1 cut(s) 333
PcsI WCGNNNNNNNCGW 8 cut(s) 389, 398, 401, 410, 429, 578, 590, 596
PctI GAATGC 1 cut(s) 685
PfeI GAWTC 5 cut(s) 194, 335, 788, 865, 931
Pfl23II CGTACG 1 cut(s) 481
PflFI GACNNNGTC 3 cut(s) 167, 400, 409
Ple19I CGATCG 1 cut(s) 77
PleI GAGTC 1 cut(s) 442
PmaCI CACGTG 1 cut(s) 600
PmlI CACGTG 1 cut(s) 600
PpsI GAGTC 1 cut(s) 442
Ppu21I YACGTR 1 cut(s) 600
Psp124BI GAGCTC 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 426
PspCI CACGTG 1 cut(s) 600
PspGI CCWGG 1 cut(s) 426
PspLI CGTACG 1 cut(s) 481
PspN4I GGNNCC 4 cut(s) 104, 349, 747, 822
PspPI GGNCC 1 cut(s) 687
PsyI GACNNNGTC 3 cut(s) 167, 400, 409
PvuI CGATCG 1 cut(s) 77
RsaI GTAC 3 cut(s) 125, 483, 707
RsaNI GTAC 3 cut(s) 124, 482, 706
RseI CAYNNNNRTG 1 cut(s) 783
SacI GAGCTC 1 cut(s) 590
SacII CCGCGG 3 cut(s) 146, 244, 457
SalI GTCGAC 1 cut(s) 403
SaqAI TTAA 3 cut(s) 255, 569, 711
Sau3AI GATC 8 cut(s) 12, 74, 298, 418, 511, 619, 637, 763
Sau96I GGNCC 1 cut(s) 687
ScaI AGTACT 1 cut(s) 125
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 2 cut(s) 590, 599
SfaNI GCATC 1 cut(s) 280
Sfr303I CCGCGG 3 cut(s) 146, 244, 457
SfuI TTCGAA 1 cut(s) 333
SgrBI CCGCGG 3 cut(s) 146, 244, 457
SinI GGWCC 1 cut(s) 687
SmiMI CAYNNNNRTG 1 cut(s) 783
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 1 cut(s) 256
SspI AATATT 1 cut(s) 802
SstI GAGCTC 1 cut(s) 590
StyD4I CCNGG 1 cut(s) 426
TaaI ACNGT 4 cut(s) 486, 745, 820, 918
TaiI ACGT 4 cut(s) 168, 321, 404, 602
TaqI TCGA 6 cut(s) 98, 333, 404, 522, 564, 640
TasI AATT 1 cut(s) 256
TatI WGTACW 2 cut(s) 123, 705
TfiI GAWTC 5 cut(s) 194, 335, 788, 865, 931
Tru1I TTAA 3 cut(s) 255, 569, 711
Tru9I TTAA 3 cut(s) 255, 569, 711
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 4 cut(s) 209, 268, 364, 606
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 20, 954, 992
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 66
Tth111I GACNNNGTC 3 cut(s) 167, 400, 409
VpaK11BI GGWCC 1 cut(s) 687
XmiI GTMKAC 1 cut(s) 404
ZraI GACGTC 2 cut(s) 166, 402
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.