Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8469107.1

Orthogroup ID

OG0009406

Physical Location & Seq

Genomic Coordinates Reverse (-)

778 .. 1980

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8469107.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 797 bp

ctactactactactactacggcggtgacgcgccgcggccaccagcttaatttgtttccgctgcatccggagctgaacgcggcggaggcggatcaccagtccgacgacaacgtggctctgctgttcgaatccgacggcggagccactctccacgggctgcttacctccgccgacacggccaccacgacgacgacgtcgacaatgtcgtccgatcacgaccaggccgagtccagttacggctaccgccgcggaatggaacgcggcgacgatatcgtacggtcggcgatgagggggagcggaggagatcggagcgtcgagaagtgggtgtgttactcggagctggtgaaggaggaggtcgagttaacggcgacgacgaccagctcggcgagcacgtgttgcagcgtcggcgatgatcggaaaggttatcgggatcgacggctggcgttgaagcttgactatgaggaggtcttgaatgcttggtccgataaggggtcgctgtacattaaaaccgaagacggcgagccgccgccgcagacggtgccggacttgcttcaggatcagctctttcaccacctccatgattctactgccaatattgaggatttatggacggtgcctgaagagagcggtagcggtagcggtagcttggagaggaagattcaaagacaggcgagtttattgagatacaagcggaaaagggagaacagactgttttctaagcggattcggtatgaagttcggaagctaaatgccgagaaacgaccccgtatgaagggtcggtttgtgaagagtagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

264

Amino Acids

29.62

Weight (kDa)

6.26

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14370
fragaria_vesca	FvH4_6g52200 FvH4_6g52200 FvH4_6g52200
malus_domestica	MD09G1019800.v1.1 MD17G1020400.v1.1
prunus_persica	Prupe.3G296700_v2.0.a1
pyrus_communis	pycom111g01640 pycom17g01700
rosa_chinensis	RchiOBHm_Chr2g0173701
rosa_laevigata	RLG00000022215
rosa_multiflora	Rmu_co8469107.1_g000001 Rmu_sc0002538.1_g000006
rosa_roxburghii	Rroxscaffold_2G00078670 Rroxscaffold_2G00078690
rosa_rugosa	Rorug02G0572400
rosa_samantha	Rh2AG651300 Rh2BG661800 Rh2CG626700 Rh2CG626800 Rh2DG677000
rosa_wichuraiana	Rw2G053450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	192, 204
AatII	GACGTC	1 cut(s)	196
AccB1I	GGYRCC	2 cut(s)	537, 612
AccBSI	CCGCTC	2 cut(s)	296, 626
AccI	GTMKAC	1 cut(s)	196
AccII	CGCG	5 cut(s)	30, 35, 79, 248, 260
AccIII	TCCGGA	1 cut(s)	66
AclWI	GGATC	3 cut(s)	98, 437, 563
AcoI	YGGCCR	2 cut(s)	36, 176
AcuI	CTGAAG	2 cut(s)	535, 638
AcvI	CACGTG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	193
AfaI	GTAC	2 cut(s)	275, 499
AfiI	CCNNNNNNNGG	3 cut(s)	252, 488, 771
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	3 cut(s)	447, 471, 661
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	8 cut(s)	45, 72, 339, 380, 450, 561, 644, 744
AluI	AGCT	8 cut(s)	45, 72, 339, 380, 450, 561, 644, 744
Alw21I	GWGCWC	1 cut(s)	391
AlwI	GGATC	3 cut(s)	98, 437, 563
Aor13HI	TCCGGA	1 cut(s)	66
AoxI	GGCC	3 cut(s)	36, 176, 221
ApeKI	GCWGC	3 cut(s)	60, 156, 398
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	4 cut(s)	36, 85, 354, 559
AsuII	TTCGAA	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	479
BanI	GGYRCC	2 cut(s)	537, 612
BbrPI	CACGTG	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	518
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	3 cut(s)	47, 143, 410
BceAI	ACGGC	7 cut(s)	35, 150, 191, 252, 380, 451, 531
BciT130I	CCWGG	1 cut(s)	220
BglI	GCCNNNNNGGC	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	3 cut(s)	141, 539, 614
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	518
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
Bpu14I	TTCGAA	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	193
BsaJI	CCNNGG	3 cut(s)	33, 150, 246
BsaWI	WCCGGW	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	3 cut(s)	252, 488, 771
Bse1I	ACTGG	2 cut(s)	96, 230
BseAI	TCCGGA	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	3 cut(s)	33, 150, 246
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	3 cut(s)	252, 488, 771
BseNI	ACTGG	2 cut(s)	96, 230
BseRI	GAGGAG	3 cut(s)	314, 364, 475
BseXI	GCAGC	3 cut(s)	47, 143, 410
Bsh1236I	CGCG	5 cut(s)	30, 35, 79, 248, 260
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	3 cut(s)	38, 178, 223
BshNI	GGYRCC	2 cut(s)	537, 612
BsiEI	CGRYCG	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	391
BsiSI	CCGG	2 cut(s)	67, 541
BsiWI	CGTACG	1 cut(s)	273
BslI	CCNNNNNNNGG	3 cut(s)	252, 488, 771
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	3 cut(s)	38, 178, 223
Bsp119I	TTCGAA	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp13I	TCCGGA	1 cut(s)	66
Bsp1407I	TGTACA	1 cut(s)	497
Bsp143I	GATC	6 cut(s)	90, 210, 303, 411, 429, 555
BspANI	GGCC	3 cut(s)	38, 178, 223
BspEI	TCCGGA	1 cut(s)	66
BspFNI	CGCG	5 cut(s)	30, 35, 79, 248, 260
BspLI	GGNNCC	3 cut(s)	141, 539, 614
BspPI	GGATC	3 cut(s)	98, 437, 563
BspT104I	TTCGAA	1 cut(s)	125
BspT107I	GGYRCC	2 cut(s)	537, 612
BsrBI	CCGCTC	2 cut(s)	296, 626
BsrGI	TGTACA	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	96, 230
BssECI	CCNNGG	3 cut(s)	33, 150, 246
BssMI	GATC	6 cut(s)	90, 210, 303, 411, 429, 555
BssNI	GRCGYC	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	4 cut(s)	278, 537, 612, 710
Bst6I	CTCTTC	2 cut(s)	614, 781
BstACI	GRCGYC	1 cut(s)	193
BstAPI	GCANNNNNTGC	2 cut(s)	395, 537
BstAUI	TGTACA	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	387, 440, 520
BstDEI	CTNAG	1 cut(s)	716
BstDSI	CCRYGG	3 cut(s)	33, 150, 246
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	5 cut(s)	30, 35, 79, 248, 260
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	6 cut(s)	93, 213, 306, 414, 432, 558
BstMBI	GATC	6 cut(s)	90, 210, 303, 411, 429, 555
BstMCI	CGRYCG	1 cut(s)	280
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	218
BstUI	CGCG	5 cut(s)	30, 35, 79, 248, 260
BstV1I	GCAGC	3 cut(s)	47, 143, 410
BstV2I	GAAGAC	1 cut(s)	518
BsuRI	GGCC	3 cut(s)	38, 178, 223
BtgI	CCRYGG	3 cut(s)	33, 150, 246
BtgZI	GCGATG	2 cut(s)	298, 422
BtsCI	GGATG	1 cut(s)	63
Cac8I	GCNNGC	3 cut(s)	387, 440, 520
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	479
Cfr42I	CCGCGG	2 cut(s)	36, 249
CseI	GACGC	3 cut(s)	36, 300, 390
Csp6I	GTAC	2 cut(s)	274, 498
CviAII	CATG	1 cut(s)	577
CviQI	GTAC	2 cut(s)	274, 498
DdeI	CTNAG	1 cut(s)	716
DpnI	GATC	6 cut(s)	92, 212, 305, 413, 431, 557
DpnII	GATC	6 cut(s)	90, 210, 303, 411, 429, 555
DrdI	GACNNNNNNGTC	2 cut(s)	192, 204
DseDI	GACNNNNNNGTC	2 cut(s)	192, 204
EaeI	YGGCCR	2 cut(s)	36, 176
Eam1104I	CTCTTC	2 cut(s)	614, 781
EarI	CTCTTC	2 cut(s)	614, 781
EciI	GGCGGA	4 cut(s)	97, 103, 152, 156
Eco32I	GATATC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	2 cut(s)	535, 638
Eco72I	CACGTG	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	270
FaeI	CATG	1 cut(s)	580
FaiI	YATR	5 cut(s)	458, 578, 606, 731, 769
FatI	CATG	1 cut(s)	576
FblI	GTMKAC	1 cut(s)	196
FokI	GGATG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	31
HaeIII	GGCC	3 cut(s)	38, 178, 223
HapII	CCGG	2 cut(s)	67, 541
HgaI	GACGC	3 cut(s)	36, 300, 390
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	1 cut(s)	580
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	2 cut(s)	197, 362
HindII	GTYRAC	2 cut(s)	197, 362
HindIII	AAGCTT	1 cut(s)	448
HinfI	GANTC	5 cut(s)	127, 226, 580, 657, 723
HpaI	GTTAAC	1 cut(s)	362
HpaII	CCGG	2 cut(s)	67, 541
HphI	GGTGA	4 cut(s)	36, 85, 354, 559
Hpy166II	GTNNAC	2 cut(s)	197, 362
Hpy188I	TCNGA	8 cut(s)	102, 132, 210, 308, 336, 416, 483, 740
Hpy188III	TCNNGA	6 cut(s)	67, 214, 315, 427, 468, 553
Hpy8I	GTNNAC	2 cut(s)	197, 362
HpyAV	CCTTC	2 cut(s)	339, 765
HpyCH4III	ACNGT	4 cut(s)	278, 537, 612, 710
HpyCH4IV	ACGT	3 cut(s)	110, 193, 391
HpyCH4V	TGCA	2 cut(s)	63, 398
HpyF3I	CTNAG	1 cut(s)	716
HpySE526I	ACGT	3 cut(s)	110, 193, 391
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	580
HspAI	GCGC	1 cut(s)	30
Kpn2I	TCCGGA	1 cut(s)	66
KspAI	GTTAAC	1 cut(s)	362
KspI	CCGCGG	2 cut(s)	36, 249
Kzo9I	GATC	6 cut(s)	90, 210, 303, 411, 429, 555
LmnI	GCTCC	5 cut(s)	69, 139, 293, 308, 336
Lsp1109I	GCAGC	3 cut(s)	47, 143, 410
LweI	GCATC	1 cut(s)	72
MaeII	ACGT	3 cut(s)	110, 193, 391
MaeIII	GTNAC	3 cut(s)	24, 232, 328
MalI	GATC	6 cut(s)	92, 212, 305, 413, 431, 557
MbiI	CCGCTC	2 cut(s)	296, 626
MboI	GATC	6 cut(s)	90, 210, 303, 411, 429, 555
MboII	GAAGA	3 cut(s)	523, 631, 666
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	2 cut(s)	125, 155
MroI	TCCGGA	1 cut(s)	66
MseI	TTAA	3 cut(s)	47, 361, 503
MslI	CAYNNNNRTG	1 cut(s)	575
MspA1I	CMGCKG	3 cut(s)	35, 60, 248
MspI	CCGG	2 cut(s)	67, 541
MspR9I	CCNGG	1 cut(s)	220
Mva1269I	GAATGC	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	5 cut(s)	30, 35, 79, 248, 260
NdeII	GATC	6 cut(s)	90, 210, 303, 411, 429, 555
NlaIII	CATG	1 cut(s)	580
NlaIV	GGNNCC	3 cut(s)	141, 539, 614
NmeAIII	GCCGAG	3 cut(s)	249, 361, 777
NmuCI	GTSAC	1 cut(s)	24
NspV	TTCGAA	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	7 cut(s)	181, 190, 193, 202, 221, 370, 388
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	4 cut(s)	127, 580, 657, 723
Pfl23II	CGTACG	1 cut(s)	273
PflFI	GACNNNGTC	2 cut(s)	192, 201
PleI	GAGTC	1 cut(s)	234
PmaCI	CACGTG	1 cut(s)	392
PmlI	CACGTG	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	234
Ppu21I	YACGTR	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	218
PspCI	CACGTG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	218
PspLI	CGTACG	1 cut(s)	273
PspN4I	GGNNCC	3 cut(s)	141, 539, 614
PspPI	GGNCC	1 cut(s)	479
PsyI	GACNNNGTC	2 cut(s)	192, 201
RsaI	GTAC	2 cut(s)	275, 499
RsaNI	GTAC	2 cut(s)	274, 498
RseI	CAYNNNNRTG	1 cut(s)	575
SacII	CCGCGG	2 cut(s)	36, 249
SalI	GTCGAC	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	47, 361, 503
Sau3AI	GATC	6 cut(s)	90, 210, 303, 411, 429, 555
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	391
SfaNI	GCATC	1 cut(s)	72
Sfr303I	CCGCGG	2 cut(s)	36, 249
SfuI	TTCGAA	1 cut(s)	125
SgrBI	CCGCGG	2 cut(s)	36, 249
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	575
Sse9I	AATT	1 cut(s)	48
SspI	AATATT	1 cut(s)	594
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	4 cut(s)	278, 537, 612, 710
TaiI	ACGT	3 cut(s)	113, 196, 394
TaqI	TCGA	5 cut(s)	125, 196, 314, 356, 432
TasI	AATT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	497
TauI	GCSGC	8 cut(s)	35, 38, 82, 248, 263, 525, 528, 531
TfiI	GAWTC	4 cut(s)	127, 580, 657, 723
Tru1I	TTAA	3 cut(s)	47, 361, 503
Tru9I	TTAA	3 cut(s)	47, 361, 503
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	3 cut(s)	60, 156, 398
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	2 cut(s)	746, 784
Tth111I	GACNNNGTC	2 cut(s)	192, 201
VpaK11BI	GGWCC	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	196
ZraI	GACGTC	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.