Rroxscaffold_2G00078690

Zinc finger protein CONSTANS-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009406
Physical Location & Seq
Reverse (-)
1933210 .. 1935078
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00078690.1

Sequence Viewer

Length: 1083 bp
ATGTGCCACCACAACAAGAACAGTCCACCTCCGAATCACCATCACGTGAAATTTCAAACCAGGTCGATTTCTATGATGAAGATGATCAAGGAGGAAGAAGAAGAAGAAGAAGAAATCAAGCCGGTAAAGAAAGCTTCACTGAAACCGAAGCGATCAGCCGCGGCGGCGGCGCGGAAATCGAGGAGCCGGAGAAGAAAACCGAAGTACTTGAGCCTCCGCTCGTCGCGGCTCTCCGCCCGAAACGACGTCGTCGCCGCCTCCTCCGCCGATACGGATTCCAAGATGAATACTGCTACTACTACTACGGCGGTGACGCGCCGCGGCCACCAGCTTAATTTGTTTCCGTTGCATCCGGAGCTGAACGCGGCGGAGGCGGATCACCAGTCCGACGACAACGTGGCTCTGCTGTTCGAATCCGACGGCGGAGCCACTCTCCACGGGCTGCTCACCTCCGCCGAAACCGCCACCACCACGACGACGTCGACAATGTCGTCCGATCACGACCAGGCCGAGTCCAGCTACGGCTACCGCCGAGGAGTCGACCGAGGCGACGATATCGTACGGTCGGCGATGAGGGGGAGCGGAGGAGATCGGAGCGTGGAGAAATGGGTGTGTTACTCGGAGCTGGTGAAGGAGGAGGTCGAGTTAACGGCGACGACGACGAGCTCGGCGAGCACGTGTTGCAGCGTCGGCGATGATCGGAAAGGTCATCGGGATCGACGGCTGGCGTTGAAGCTTGACTATGAGGAGGTCTTGAATGCTTGGTCCGATAAGGGGTCGCTGTACATTAAAACCGAAGACGGCGAGCCGCCGCCGCAGACGGTGCCGGACTTGCTTCAGGATCAGCTCTTTCACCACCTCCATGATTCCACTGCCAATATTGAGGATTTATGGAGGGTGCCTGAAGAGGGTGGGAGTGGTAGCGGTAGCTTGGAGAGGAAGATTCAAAGACAGGCGAGTTTATTGAGATTCAAGCGGAAAAGGGAGAACAGGCTGTTTTCTAAGCGGATTCGGTATGAAGTTCGGAAGCTAAATGCCGAGAAACGACCCCGTATGAAGGGTCGGTTTGTGAAGAGTAGTTGA

Protein Analysis

360

Amino Acids

40.5

Weight (kDa)

9.35

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 317 - 359 1.1e-16 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 490
AatII GACGTC 2 cut(s) 249, 482
AccB1I GGYRCC 2 cut(s) 823, 898
AccBSI CCGCTC 2 cut(s) 219, 582
AccI GTMKAC 2 cut(s) 482, 540
AccII CGCG 6 cut(s) 161, 172, 226, 316, 321, 365
AccIII TCCGGA 1 cut(s) 352
AclWI GGATC 3 cut(s) 384, 723, 849
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 1 cut(s) 50
AcuI CTGAAG 2 cut(s) 821, 924
AcvI CACGTG 2 cut(s) 46, 678
AcyI GRCGYC 2 cut(s) 246, 479
AfaI GTAC 3 cut(s) 206, 561, 785
AfiI CCNNNNNNNGG 3 cut(s) 774, 908, 1057
AflIII ACRYGT 1 cut(s) 677
AgsI TTSAA 5 cut(s) 56, 733, 757, 947, 973
AjnI CCWGG 2 cut(s) 59, 504
Alw21I GWGCWC 2 cut(s) 668, 677
AlwI GGATC 3 cut(s) 384, 723, 849
Aor13HI TCCGGA 1 cut(s) 352
AoxI GGCC 2 cut(s) 322, 507
ApeKI GCWGC 2 cut(s) 442, 684
ApoI RAATTY 1 cut(s) 50
AspLEI GCGC 2 cut(s) 172, 318
AspS9I GGNCC 1 cut(s) 765
AsuHPI GGTGA 6 cut(s) 29, 322, 371, 439, 640, 845
AsuII TTCGAA 1 cut(s) 411
AvaII GGWCC 1 cut(s) 765
BanI GGYRCC 2 cut(s) 823, 898
BanII GRGCYC 1 cut(s) 668
BbrPI CACGTG 2 cut(s) 46, 678
BbsI GAAGAC 1 cut(s) 804
Bbv12I GWGCWC 2 cut(s) 668, 677
BbvI GCAGC 2 cut(s) 429, 696
BccI CCATC 1 cut(s) 48
BceAI ACGGC 6 cut(s) 321, 436, 538, 666, 737, 817
BciT130I CCWGG 2 cut(s) 61, 506
BclI TGATCA 1 cut(s) 84
BglI GCCNNNNNGGC 1 cut(s) 164
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 2 cut(s) 61, 506
Bme18I GGWCC 1 cut(s) 765
BmgT120I GGNCC 1 cut(s) 765
BmiI GGNNCC 4 cut(s) 185, 427, 825, 900
BmrFI CCNGG 2 cut(s) 61, 506
BmsI GCATC 1 cut(s) 358
BpiI GAAGAC 1 cut(s) 804
BplI GAGNNNNNCTC 2 cut(s) 417, 449
Bpu14I TTCGAA 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 229
BsaAI YACGTR 2 cut(s) 46, 678
BsaHI GRCGYC 2 cut(s) 246, 479
BsaJI CCNNGG 5 cut(s) 159, 319, 436, 532, 544
BsaWI WCCGGW 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 629, 659
Bsc4I CCNNNNNNNGG 3 cut(s) 774, 908, 1057
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 382
BseAI TCCGGA 1 cut(s) 352
BseBI CCWGG 2 cut(s) 61, 506
BseDI CCNNGG 5 cut(s) 159, 319, 436, 532, 544
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 3 cut(s) 774, 908, 1057
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 6 cut(s) 196, 250, 549, 600, 650, 761
BseXI GCAGC 2 cut(s) 429, 696
Bsh1236I CGCG 6 cut(s) 161, 172, 226, 316, 321, 365
Bsh1285I CGRYCG 2 cut(s) 544, 566
BshFI GGCC 2 cut(s) 324, 509
BshNI GGYRCC 2 cut(s) 823, 898
BsiEI CGRYCG 2 cut(s) 544, 566
BsiHKAI GWGCWC 2 cut(s) 668, 677
BsiSI CCGG 4 cut(s) 122, 187, 353, 827
BsiWI CGTACG 1 cut(s) 559
BslI CCNNNNNNNGG 3 cut(s) 774, 908, 1057
BsmI GAATGC 1 cut(s) 763
BsnI GGCC 2 cut(s) 324, 509
Bsp119I TTCGAA 1 cut(s) 411
Bsp1286I GDGCHC 2 cut(s) 668, 677
Bsp13I TCCGGA 1 cut(s) 352
Bsp1407I TGTACA 1 cut(s) 783
Bsp143I GATC 8 cut(s) 84, 152, 376, 496, 589, 697, 715, 841
BspANI GGCC 2 cut(s) 324, 509
BspEI TCCGGA 1 cut(s) 352
BspFNI CGCG 6 cut(s) 161, 172, 226, 316, 321, 365
BspLI GGNNCC 4 cut(s) 185, 427, 825, 900
BspPI GGATC 3 cut(s) 384, 723, 849
BspT104I TTCGAA 1 cut(s) 411
BspT107I GGYRCC 2 cut(s) 823, 898
BsrBI CCGCTC 2 cut(s) 219, 582
BsrFI RCCGGY 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 783
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 5 cut(s) 159, 319, 436, 532, 544
BssMI GATC 8 cut(s) 84, 152, 376, 496, 589, 697, 715, 841
BssNI GRCGYC 2 cut(s) 246, 479
Bst2UI CCWGG 2 cut(s) 61, 506
Bst4CI ACNGT 3 cut(s) 23, 564, 823
Bst6I CTCTTC 2 cut(s) 900, 1067
BstACI GRCGYC 2 cut(s) 246, 479
BstAPI GCANNNNNTGC 2 cut(s) 681, 823
BstAUI TGTACA 1 cut(s) 783
BstBAI YACGTR 2 cut(s) 46, 678
BstBI TTCGAA 1 cut(s) 411
BstC8I GCNNGC 3 cut(s) 673, 726, 806
BstDEI CTNAG 1 cut(s) 1002
BstDSI CCRYGG 3 cut(s) 159, 319, 436
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 6 cut(s) 161, 172, 226, 316, 321, 365
BstHHI GCGC 2 cut(s) 172, 318
BstKTI GATC 8 cut(s) 87, 155, 379, 499, 592, 700, 718, 844
BstMBI GATC 8 cut(s) 84, 152, 376, 496, 589, 697, 715, 841
BstMCI CGRYCG 2 cut(s) 544, 566
BstNI CCWGG 2 cut(s) 61, 506
BstSCI CCNGG 2 cut(s) 59, 504
BstUI CGCG 6 cut(s) 161, 172, 226, 316, 321, 365
BstV1I GCAGC 2 cut(s) 429, 696
BstV2I GAAGAC 1 cut(s) 804
BsuRI GGCC 2 cut(s) 324, 509
BtgI CCRYGG 3 cut(s) 159, 319, 436
BtgZI GCGATG 2 cut(s) 584, 708
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 2 cut(s) 137, 870
Cac8I GCNNGC 3 cut(s) 673, 726, 806
CfoI GCGC 2 cut(s) 172, 318
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 765
Cfr42I CCGCGG 2 cut(s) 162, 322
CseI GACGC 2 cut(s) 322, 676
CsiI ACCWGGT 1 cut(s) 59
Csp6I GTAC 3 cut(s) 205, 560, 784
CviAII CATG 1 cut(s) 863
CviQI GTAC 3 cut(s) 205, 560, 784
DdeI CTNAG 1 cut(s) 1002
DpnI GATC 8 cut(s) 86, 154, 378, 498, 591, 699, 717, 843
DpnII GATC 8 cut(s) 84, 152, 376, 496, 589, 697, 715, 841
DrdI GACNNNNNNGTC 1 cut(s) 490
DseDI GACNNNNNNGTC 1 cut(s) 490
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 2 cut(s) 900, 1067
EarI CTCTTC 2 cut(s) 900, 1067
EciI GGCGGA 6 cut(s) 223, 253, 383, 389, 438, 442
Ecl136II GAGCTC 1 cut(s) 666
Eco24I GRGCYC 1 cut(s) 668
Eco32I GATATC 1 cut(s) 556
Eco47I GGWCC 1 cut(s) 765
Eco53kI GAGCTC 1 cut(s) 666
Eco57I CTGAAG 2 cut(s) 821, 924
Eco72I CACGTG 2 cut(s) 46, 678
EcoICRI GAGCTC 1 cut(s) 666
EcoRII CCWGG 2 cut(s) 59, 504
EcoRV GATATC 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 668
FaeI CATG 1 cut(s) 866
FaiI YATR 6 cut(s) 74, 744, 864, 892, 1017, 1055
FatI CATG 1 cut(s) 862
FbaI TGATCA 1 cut(s) 84
FblI GTMKAC 2 cut(s) 482, 540
FokI GGATG 1 cut(s) 336
FriOI GRGCYC 1 cut(s) 668
GlaI GCGC 2 cut(s) 171, 317
HaeIII GGCC 2 cut(s) 324, 509
HapII CCGG 4 cut(s) 122, 187, 353, 827
HgaI GACGC 2 cut(s) 322, 676
HhaI GCGC 2 cut(s) 172, 318
Hin1I GRCGYC 2 cut(s) 246, 479
Hin1II CATG 1 cut(s) 866
Hin6I GCGC 2 cut(s) 170, 316
HinP1I GCGC 2 cut(s) 170, 316
HincII GTYRAC 3 cut(s) 483, 541, 648
HindII GTYRAC 3 cut(s) 483, 541, 648
HindIII AAGCTT 2 cut(s) 132, 734
HinfI GANTC 9 cut(s) 34, 275, 413, 512, 537, 866, 943, 969, 1009
HpaI GTTAAC 1 cut(s) 648
HpaII CCGG 4 cut(s) 122, 187, 353, 827
HphI GGTGA 6 cut(s) 29, 322, 371, 439, 640, 845
Hpy166II GTNNAC 4 cut(s) 26, 483, 541, 648
Hpy188I TCNGA 9 cut(s) 33, 388, 418, 496, 594, 622, 702, 769, 1026
Hpy188III TCNNGA 5 cut(s) 353, 500, 713, 754, 839
Hpy8I GTNNAC 4 cut(s) 26, 483, 541, 648
HpyAV CCTTC 2 cut(s) 625, 1051
HpyCH4III ACNGT 3 cut(s) 23, 564, 823
HpyCH4IV ACGT 5 cut(s) 45, 246, 396, 479, 677
HpyCH4V TGCA 2 cut(s) 349, 684
HpyF3I CTNAG 1 cut(s) 1002
HpySE526I ACGT 5 cut(s) 45, 246, 396, 479, 677
Hsp92I GRCGYC 2 cut(s) 246, 479
Hsp92II CATG 1 cut(s) 866
HspAI GCGC 2 cut(s) 170, 316
Kpn2I TCCGGA 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 84
KspAI GTTAAC 1 cut(s) 648
KspI CCGCGG 2 cut(s) 162, 322
Kzo9I GATC 8 cut(s) 84, 152, 376, 496, 589, 697, 715, 841
LmnI GCTCC 6 cut(s) 183, 355, 425, 579, 594, 622
Lsp1109I GCAGC 2 cut(s) 429, 696
LweI GCATC 1 cut(s) 358
MabI ACCWGGT 1 cut(s) 59
MaeII ACGT 5 cut(s) 45, 246, 396, 479, 677
MaeIII GTNAC 2 cut(s) 310, 614
MalI GATC 8 cut(s) 86, 154, 378, 498, 591, 699, 717, 843
MbiI CCGCTC 2 cut(s) 219, 582
MboI GATC 8 cut(s) 84, 152, 376, 496, 589, 697, 715, 841
MhlI GDGCHC 2 cut(s) 668, 677
MluCI AATT 2 cut(s) 50, 334
MlyI GAGTC 2 cut(s) 521, 546
MmeI TCCRAC 2 cut(s) 411, 441
MroI TCCGGA 1 cut(s) 352
MseI TTAA 3 cut(s) 333, 647, 789
MslI CAYNNNNRTG 1 cut(s) 861
MspA1I CMGCKG 2 cut(s) 161, 321
MspI CCGG 4 cut(s) 122, 187, 353, 827
MspR9I CCNGG 2 cut(s) 61, 506
Mva1269I GAATGC 1 cut(s) 763
MvaI CCWGG 2 cut(s) 61, 506
MvnI CGCG 6 cut(s) 161, 172, 226, 316, 321, 365
NdeII GATC 8 cut(s) 84, 152, 376, 496, 589, 697, 715, 841
NlaIII CATG 1 cut(s) 866
NlaIV GGNNCC 4 cut(s) 185, 427, 825, 900
NmeAIII GCCGAG 4 cut(s) 535, 557, 647, 1063
NmuCI GTSAC 1 cut(s) 310
NspV TTCGAA 1 cut(s) 411
PcsI WCGNNNNNNNCGW 7 cut(s) 479, 488, 507, 546, 656, 668, 674
PctI GAATGC 1 cut(s) 763
PfeI GAWTC 7 cut(s) 34, 275, 413, 866, 943, 969, 1009
Pfl23II CGTACG 1 cut(s) 559
PflFI GACNNNGTC 3 cut(s) 248, 478, 487
PleI GAGTC 2 cut(s) 520, 545
PmaCI CACGTG 2 cut(s) 46, 678
PmlI CACGTG 2 cut(s) 46, 678
PpsI GAGTC 2 cut(s) 520, 545
Ppu21I YACGTR 2 cut(s) 46, 678
Psp124BI GAGCTC 1 cut(s) 668
Psp6I CCWGG 2 cut(s) 59, 504
PspCI CACGTG 2 cut(s) 46, 678
PspGI CCWGG 2 cut(s) 59, 504
PspLI CGTACG 1 cut(s) 559
PspN4I GGNNCC 4 cut(s) 185, 427, 825, 900
PspPI GGNCC 1 cut(s) 765
PsyI GACNNNGTC 3 cut(s) 248, 478, 487
RsaI GTAC 3 cut(s) 206, 561, 785
RsaNI GTAC 3 cut(s) 205, 560, 784
RseI CAYNNNNRTG 1 cut(s) 861
SacI GAGCTC 1 cut(s) 668
SacII CCGCGG 2 cut(s) 162, 322
SalI GTCGAC 2 cut(s) 481, 539
SaqAI TTAA 3 cut(s) 333, 647, 789
Sau3AI GATC 8 cut(s) 84, 152, 376, 496, 589, 697, 715, 841
Sau96I GGNCC 1 cut(s) 765
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 2 cut(s) 521, 546
ScrFI CCNGG 2 cut(s) 61, 506
SduI GDGCHC 2 cut(s) 668, 677
SexAI ACCWGGT 1 cut(s) 59
SfaNI GCATC 1 cut(s) 358
Sfr303I CCGCGG 2 cut(s) 162, 322
SfuI TTCGAA 1 cut(s) 411
SgrBI CCGCGG 2 cut(s) 162, 322
SinI GGWCC 1 cut(s) 765
SmiMI CAYNNNNRTG 1 cut(s) 861
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 2 cut(s) 50, 334
SspI AATATT 1 cut(s) 880
SstI GAGCTC 1 cut(s) 668
StyD4I CCNGG 2 cut(s) 59, 504
TaaI ACNGT 3 cut(s) 23, 564, 823
TaiI ACGT 5 cut(s) 48, 249, 399, 482, 680
TaqI TCGA 7 cut(s) 65, 179, 411, 482, 540, 642, 718
TaqII GACCGA 1 cut(s) 558
TasI AATT 2 cut(s) 50, 334
TatI WGTACW 2 cut(s) 204, 783
TfiI GAWTC 7 cut(s) 34, 275, 413, 866, 943, 969, 1009
Tru1I TTAA 3 cut(s) 333, 647, 789
Tru9I TTAA 3 cut(s) 333, 647, 789
TscAI CASTG 2 cut(s) 144, 877
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 2 cut(s) 442, 684
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 4 cut(s) 92, 299, 1032, 1070
TspGWI ACGGA 2 cut(s) 287, 333
TspRI CASTG 2 cut(s) 144, 877
Tth111I GACNNNGTC 3 cut(s) 248, 478, 487
VpaK11BI GGWCC 1 cut(s) 765
XapI RAATTY 1 cut(s) 50
XmiI GTMKAC 2 cut(s) 482, 540
ZraI GACGTC 2 cut(s) 247, 480
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.