Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002538.1

Orthogroup ID

OG0009406

Physical Location & Seq

Genomic Coordinates Reverse (-)

21513 .. 23001

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002538.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

atgtgccaccacaacaagaacagtccacctccgaatcatcatcacgtgaaatttcaaaccaggtcgatttctatgatgaagatgatcaaggaggaggaggaagaagaaatcaagccggtaaagagagcttcactgaaaccgaagcgatcggcggcggcggcgcggaaatcgaggagccggagaagaaagccgaagtacttgagcctccgctctccgcggctctccgcccgaaacgacgtcgtcgccgcctcgtccgccgatacggattccaagatgactgctactactactactactactactacggcggtgacgcgccgcggccaccagcttaatttgtttccgctgcatccggagctgaacgcggcggaggcggatcaccagtccgacgacaacgtggctctgctgttcgaatccgacggcggagccactctccacgggctgcttacctccgccgacacggccaccacgacgacgacgtcgacaatgtcgtccgatcacgaccaggccgagtccagttacggctaccgccgcggaatggaacgcggcgacgatatcgtacggtcggcgatgagggggagcggaggagatcggagcgtcgagaagtgggtgtgttactcggagctggtgaaggaggaggtcgagttaacggcgacgacgaccagctcggcgagcacgtgttgcagcgtcggcgatgatcggaaaggttatcgggatcgacggctggcgttgaagcttgactatgaggaggtcttgaatgcttggtccgataaggggtcgctgtacattaaaaccgaagacggcgagccgccgccgcagacggtgccggacttgcttcaggatcagctctttcaccacctccatgattctactgccaatattgaggatttatggacggtgcctgaagagagcggtagcggtagcggtagcttggagaggaagattcaaagacaggcgagtttattgagatacaagcggaaaagggagaacagactgttttctaagcggattcggtatgaagttcggaagctaaatgccgagaaacgaccccgtatgaagggtcggtttgtgaagagtagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

360

Amino Acids

40.55

Weight (kDa)

9.4

Isoelectric Point (pI)

57.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14370
fragaria_vesca	FvH4_6g52200 FvH4_6g52200 FvH4_6g52200
malus_domestica	MD09G1019800.v1.1 MD17G1020400.v1.1
prunus_persica	Prupe.3G296700_v2.0.a1
pyrus_communis	pycom111g01640 pycom17g01700
rosa_chinensis	RchiOBHm_Chr2g0173701
rosa_laevigata	RLG00000022215
rosa_multiflora	Rmu_co8469107.1_g000001 Rmu_sc0002538.1_g000006
rosa_roxburghii	Rroxscaffold_2G00078670 Rroxscaffold_2G00078690
rosa_rugosa	Rorug02G0572400
rosa_samantha	Rh2AG651300 Rh2BG661800 Rh2CG626700 Rh2CG626800 Rh2DG677000
rosa_wichuraiana	Rw2G053450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	478, 490
AatII	GACGTC	2 cut(s)	240, 482
AccB1I	GGYRCC	2 cut(s)	823, 898
AccBSI	CCGCTC	3 cut(s)	210, 582, 912
AccI	GTMKAC	1 cut(s)	482
AccII	CGCG	7 cut(s)	163, 217, 316, 321, 365, 534, 546
AccIII	TCCGGA	1 cut(s)	352
AclWI	GGATC	3 cut(s)	384, 723, 849
AcoI	YGGCCR	2 cut(s)	322, 462
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	2 cut(s)	821, 924
AcvI	CACGTG	2 cut(s)	46, 678
AcyI	GRCGYC	2 cut(s)	237, 479
AfaI	GTAC	3 cut(s)	197, 561, 785
AfiI	CCNNNNNNNGG	3 cut(s)	538, 774, 1057
AflIII	ACRYGT	1 cut(s)	677
AgsI	TTSAA	4 cut(s)	56, 733, 757, 947
AjnI	CCWGG	2 cut(s)	59, 504
AluBI	AGCT	9 cut(s)	128, 331, 358, 625, 666, 736, 847, 930, 1030
AluI	AGCT	9 cut(s)	128, 331, 358, 625, 666, 736, 847, 930, 1030
Alw21I	GWGCWC	1 cut(s)	677
AlwI	GGATC	3 cut(s)	384, 723, 849
Aor13HI	TCCGGA	1 cut(s)	352
AoxI	GGCC	3 cut(s)	322, 462, 507
ApeKI	GCWGC	3 cut(s)	346, 442, 684
ApoI	RAATTY	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	163, 318
AspS9I	GGNCC	1 cut(s)	765
AsuHPI	GGTGA	4 cut(s)	322, 371, 640, 845
AsuII	TTCGAA	1 cut(s)	411
AvaII	GGWCC	1 cut(s)	765
BanI	GGYRCC	2 cut(s)	823, 898
BbrPI	CACGTG	2 cut(s)	46, 678
BbsI	GAAGAC	1 cut(s)	804
Bbv12I	GWGCWC	1 cut(s)	677
BbvI	GCAGC	3 cut(s)	333, 429, 696
BceAI	ACGGC	7 cut(s)	321, 436, 477, 538, 666, 737, 817
BciT130I	CCWGG	2 cut(s)	61, 506
BclI	TGATCA	1 cut(s)	84
BglI	GCCNNNNNGGC	1 cut(s)	461
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	2 cut(s)	61, 506
Bme18I	GGWCC	1 cut(s)	765
BmgT120I	GGNCC	1 cut(s)	765
BmiI	GGNNCC	4 cut(s)	176, 427, 825, 900
BmrFI	CCNGG	2 cut(s)	61, 506
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	804
BplI	GAGNNNNNCTC	2 cut(s)	417, 449
Bpu14I	TTCGAA	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	220
BsaAI	YACGTR	2 cut(s)	46, 678
BsaHI	GRCGYC	2 cut(s)	237, 479
BsaJI	CCNNGG	4 cut(s)	215, 319, 436, 532
BsaWI	WCCGGW	1 cut(s)	352
BsaXI	ACNNNNNCTCC	2 cut(s)	629, 659
Bsc4I	CCNNNNNNNGG	3 cut(s)	538, 774, 1057
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	382, 516
BseAI	TCCGGA	1 cut(s)	352
BseBI	CCWGG	2 cut(s)	61, 506
BseDI	CCNNGG	4 cut(s)	215, 319, 436, 532
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	3 cut(s)	538, 774, 1057
BseNI	ACTGG	2 cut(s)	382, 516
BseRI	GAGGAG	6 cut(s)	107, 110, 187, 600, 650, 761
BseXI	GCAGC	3 cut(s)	333, 429, 696
Bsh1236I	CGCG	7 cut(s)	163, 217, 316, 321, 365, 534, 546
Bsh1285I	CGRYCG	2 cut(s)	149, 566
BshFI	GGCC	3 cut(s)	324, 464, 509
BshNI	GGYRCC	2 cut(s)	823, 898
BsiEI	CGRYCG	2 cut(s)	149, 566
BsiHKAI	GWGCWC	1 cut(s)	677
BsiSI	CCGG	4 cut(s)	116, 178, 353, 827
BsiWI	CGTACG	1 cut(s)	559
BslI	CCNNNNNNNGG	3 cut(s)	538, 774, 1057
BsmI	GAATGC	1 cut(s)	763
BsnI	GGCC	3 cut(s)	324, 464, 509
Bsp119I	TTCGAA	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	677
Bsp13I	TCCGGA	1 cut(s)	352
Bsp1407I	TGTACA	1 cut(s)	783
Bsp143I	GATC	8 cut(s)	84, 146, 376, 496, 589, 697, 715, 841
BspANI	GGCC	3 cut(s)	324, 464, 509
BspEI	TCCGGA	1 cut(s)	352
BspFNI	CGCG	7 cut(s)	163, 217, 316, 321, 365, 534, 546
BspLI	GGNNCC	4 cut(s)	176, 427, 825, 900
BspPI	GGATC	3 cut(s)	384, 723, 849
BspT104I	TTCGAA	1 cut(s)	411
BspT107I	GGYRCC	2 cut(s)	823, 898
BsrBI	CCGCTC	3 cut(s)	210, 582, 912
BsrFI	RCCGGY	1 cut(s)	115
BsrGI	TGTACA	1 cut(s)	783
BsrI	ACTGG	2 cut(s)	382, 516
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	4 cut(s)	215, 319, 436, 532
BssMI	GATC	8 cut(s)	84, 146, 376, 496, 589, 697, 715, 841
BssNI	GRCGYC	2 cut(s)	237, 479
Bst2UI	CCWGG	2 cut(s)	61, 506
Bst4CI	ACNGT	5 cut(s)	23, 564, 823, 898, 996
Bst6I	CTCTTC	2 cut(s)	900, 1067
BstACI	GRCGYC	2 cut(s)	237, 479
BstAPI	GCANNNNNTGC	2 cut(s)	681, 823
BstAUI	TGTACA	1 cut(s)	783
BstBAI	YACGTR	2 cut(s)	46, 678
BstBI	TTCGAA	1 cut(s)	411
BstC8I	GCNNGC	3 cut(s)	673, 726, 806
BstDEI	CTNAG	1 cut(s)	1002
BstDSI	CCRYGG	4 cut(s)	215, 319, 436, 532
BstF5I	GGATG	1 cut(s)	349
BstFNI	CGCG	7 cut(s)	163, 217, 316, 321, 365, 534, 546
BstHHI	GCGC	2 cut(s)	163, 318
BstKTI	GATC	8 cut(s)	87, 149, 379, 499, 592, 700, 718, 844
BstMBI	GATC	8 cut(s)	84, 146, 376, 496, 589, 697, 715, 841
BstMCI	CGRYCG	2 cut(s)	149, 566
BstNI	CCWGG	2 cut(s)	61, 506
BstSCI	CCNGG	2 cut(s)	59, 504
BstUI	CGCG	7 cut(s)	163, 217, 316, 321, 365, 534, 546
BstV1I	GCAGC	3 cut(s)	333, 429, 696
BstV2I	GAAGAC	1 cut(s)	804
BsuRI	GGCC	3 cut(s)	324, 464, 509
BtgI	CCRYGG	4 cut(s)	215, 319, 436, 532
BtgZI	GCGATG	2 cut(s)	584, 708
BtsCI	GGATG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	3 cut(s)	673, 726, 806
CfoI	GCGC	2 cut(s)	163, 318
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	765
Cfr42I	CCGCGG	3 cut(s)	218, 322, 535
CseI	GACGC	3 cut(s)	322, 586, 676
CsiI	ACCWGGT	1 cut(s)	59
Csp6I	GTAC	3 cut(s)	196, 560, 784
CviAII	CATG	1 cut(s)	863
CviQI	GTAC	3 cut(s)	196, 560, 784
DdeI	CTNAG	1 cut(s)	1002
DpnI	GATC	8 cut(s)	86, 148, 378, 498, 591, 699, 717, 843
DpnII	GATC	8 cut(s)	84, 146, 376, 496, 589, 697, 715, 841
DrdI	GACNNNNNNGTC	2 cut(s)	478, 490
DseDI	GACNNNNNNGTC	2 cut(s)	478, 490
EaeI	YGGCCR	2 cut(s)	322, 462
Eam1104I	CTCTTC	2 cut(s)	900, 1067
EarI	CTCTTC	2 cut(s)	900, 1067
EciI	GGCGGA	6 cut(s)	214, 244, 383, 389, 438, 442
Eco32I	GATATC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	765
Eco57I	CTGAAG	2 cut(s)	821, 924
Eco72I	CACGTG	2 cut(s)	46, 678
EcoRII	CCWGG	2 cut(s)	59, 504
EcoRV	GATATC	1 cut(s)	556
FaeI	CATG	1 cut(s)	866
FaiI	YATR	6 cut(s)	74, 744, 864, 892, 1017, 1055
FatI	CATG	1 cut(s)	862
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	482
FokI	GGATG	1 cut(s)	336
GlaI	GCGC	2 cut(s)	162, 317
HaeIII	GGCC	3 cut(s)	324, 464, 509
HapII	CCGG	4 cut(s)	116, 178, 353, 827
HgaI	GACGC	3 cut(s)	322, 586, 676
HhaI	GCGC	2 cut(s)	163, 318
Hin1I	GRCGYC	2 cut(s)	237, 479
Hin1II	CATG	1 cut(s)	866
Hin6I	GCGC	2 cut(s)	161, 316
HinP1I	GCGC	2 cut(s)	161, 316
HincII	GTYRAC	2 cut(s)	483, 648
HindII	GTYRAC	2 cut(s)	483, 648
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	7 cut(s)	34, 266, 413, 512, 866, 943, 1009
HpaI	GTTAAC	1 cut(s)	648
HpaII	CCGG	4 cut(s)	116, 178, 353, 827
HphI	GGTGA	4 cut(s)	322, 371, 640, 845
Hpy166II	GTNNAC	3 cut(s)	26, 483, 648
Hpy188I	TCNGA	9 cut(s)	33, 388, 418, 496, 594, 622, 702, 769, 1026
Hpy188III	TCNNGA	6 cut(s)	353, 500, 601, 713, 754, 839
Hpy8I	GTNNAC	3 cut(s)	26, 483, 648
HpyAV	CCTTC	2 cut(s)	625, 1051
HpyCH4III	ACNGT	5 cut(s)	23, 564, 823, 898, 996
HpyCH4IV	ACGT	5 cut(s)	45, 237, 396, 479, 677
HpyCH4V	TGCA	2 cut(s)	349, 684
HpyF3I	CTNAG	1 cut(s)	1002
HpySE526I	ACGT	5 cut(s)	45, 237, 396, 479, 677
Hsp92I	GRCGYC	2 cut(s)	237, 479
Hsp92II	CATG	1 cut(s)	866
HspAI	GCGC	2 cut(s)	161, 316
Kpn2I	TCCGGA	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	84
KspAI	GTTAAC	1 cut(s)	648
KspI	CCGCGG	3 cut(s)	218, 322, 535
Kzo9I	GATC	8 cut(s)	84, 146, 376, 496, 589, 697, 715, 841
LmnI	GCTCC	6 cut(s)	174, 355, 425, 579, 594, 622
Lsp1109I	GCAGC	3 cut(s)	333, 429, 696
LweI	GCATC	1 cut(s)	358
MabI	ACCWGGT	1 cut(s)	59
MaeII	ACGT	5 cut(s)	45, 237, 396, 479, 677
MaeIII	GTNAC	3 cut(s)	310, 518, 614
MalI	GATC	8 cut(s)	86, 148, 378, 498, 591, 699, 717, 843
MbiI	CCGCTC	3 cut(s)	210, 582, 912
MboI	GATC	8 cut(s)	84, 146, 376, 496, 589, 697, 715, 841
MboII	GAAGA	7 cut(s)	91, 113, 116, 195, 809, 917, 952
MhlI	GDGCHC	1 cut(s)	677
MluCI	AATT	2 cut(s)	50, 334
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	2 cut(s)	411, 441
MroI	TCCGGA	1 cut(s)	352
MseI	TTAA	3 cut(s)	333, 647, 789
MslI	CAYNNNNRTG	1 cut(s)	861
MspA1I	CMGCKG	4 cut(s)	217, 321, 346, 534
MspI	CCGG	4 cut(s)	116, 178, 353, 827
MspR9I	CCNGG	2 cut(s)	61, 506
Mva1269I	GAATGC	1 cut(s)	763
MvaI	CCWGG	2 cut(s)	61, 506
MvnI	CGCG	7 cut(s)	163, 217, 316, 321, 365, 534, 546
NdeII	GATC	8 cut(s)	84, 146, 376, 496, 589, 697, 715, 841
NlaIII	CATG	1 cut(s)	866
NlaIV	GGNNCC	4 cut(s)	176, 427, 825, 900
NmeAIII	GCCGAG	3 cut(s)	535, 647, 1063
NmuCI	GTSAC	1 cut(s)	310
NspV	TTCGAA	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	7 cut(s)	467, 476, 479, 488, 507, 656, 674
PctI	GAATGC	1 cut(s)	763
PfeI	GAWTC	6 cut(s)	34, 266, 413, 866, 943, 1009
Pfl23II	CGTACG	1 cut(s)	559
PflFI	GACNNNGTC	3 cut(s)	239, 478, 487
Ple19I	CGATCG	1 cut(s)	149
PleI	GAGTC	1 cut(s)	520
PmaCI	CACGTG	2 cut(s)	46, 678
PmlI	CACGTG	2 cut(s)	46, 678
PpsI	GAGTC	1 cut(s)	520
Ppu21I	YACGTR	2 cut(s)	46, 678
Psp6I	CCWGG	2 cut(s)	59, 504
PspCI	CACGTG	2 cut(s)	46, 678
PspGI	CCWGG	2 cut(s)	59, 504
PspLI	CGTACG	1 cut(s)	559
PspN4I	GGNNCC	4 cut(s)	176, 427, 825, 900
PspPI	GGNCC	1 cut(s)	765
PsyI	GACNNNGTC	3 cut(s)	239, 478, 487
PvuI	CGATCG	1 cut(s)	149
RsaI	GTAC	3 cut(s)	197, 561, 785
RsaNI	GTAC	3 cut(s)	196, 560, 784
RseI	CAYNNNNRTG	1 cut(s)	861
SacII	CCGCGG	3 cut(s)	218, 322, 535
SalI	GTCGAC	1 cut(s)	481
SaqAI	TTAA	3 cut(s)	333, 647, 789
Sau3AI	GATC	8 cut(s)	84, 146, 376, 496, 589, 697, 715, 841
Sau96I	GGNCC	1 cut(s)	765
ScaI	AGTACT	1 cut(s)	197
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	2 cut(s)	61, 506
SduI	GDGCHC	1 cut(s)	677
SexAI	ACCWGGT	1 cut(s)	59
SfaNI	GCATC	1 cut(s)	358
Sfr303I	CCGCGG	3 cut(s)	218, 322, 535
SfuI	TTCGAA	1 cut(s)	411
SgrBI	CCGCGG	3 cut(s)	218, 322, 535
SinI	GGWCC	1 cut(s)	765
SmiMI	CAYNNNNRTG	1 cut(s)	861
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	2 cut(s)	50, 334
SspI	AATATT	1 cut(s)	880
StyD4I	CCNGG	2 cut(s)	59, 504
TaaI	ACNGT	5 cut(s)	23, 564, 823, 898, 996
TaiI	ACGT	5 cut(s)	48, 240, 399, 482, 680
TaqI	TCGA	7 cut(s)	65, 170, 411, 482, 600, 642, 718
TasI	AATT	2 cut(s)	50, 334
TatI	WGTACW	2 cut(s)	195, 783
TfiI	GAWTC	6 cut(s)	34, 266, 413, 866, 943, 1009
Tru1I	TTAA	3 cut(s)	333, 647, 789
Tru9I	TTAA	3 cut(s)	333, 647, 789
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	3 cut(s)	346, 442, 684
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	3 cut(s)	92, 1032, 1070
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	138
Tth111I	GACNNNGTC	3 cut(s)	239, 478, 487
VpaK11BI	GGWCC	1 cut(s)	765
XapI	RAATTY	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	482
ZraI	GACGTC	2 cut(s)	238, 480
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.