Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009406

Physical Location & Seq

Genomic Coordinates Forward (+)

86596586 .. 86598350

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54089

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAGGGGGAGCGGAGGAGATCGGAGCGTCGAGAAGTGGGTGTGTTACTCGGAGCTGGTGAAGGAGGAGGTCGAGTTAACGGCGACGACGACCAGCTCGGCGAGCACGTGTTGCAGCGTCGGCGATGATCGGAAAGGTTATCGGGATCGACGGCTGGCGTTGAAGCTTGACTATGAGGAGGTCTTGAATGCTTGGTCCGATAAGGGGTCGCTGTACATTAAAACCGAAGACGGCGAGCCGCCGCCGCAAACGGTGCCGGACTTGCTTCAGGATCAGCTCTTTCACCACCTCCATGATTCTACTGCCAATATTGAGGATTTATGGACGGTGCCTGAAGAGAGCGGTAGCGGTAGCGGTAGCTTGGAGAGGAAGATTCAAAGACAGGCGAGTTTATTGAGATACAAGCGGAAAAGGGAGAACAGACTGTTTTCTAAGCGGATTCGGTATGAAGTTCGGAAGCTAAATGCCGAGAAACGACCCCGTATGAAGGGTCGGTTTGTGAAGAGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

170

Amino Acids

19.57

Weight (kDa)

9.11

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	127 - 169	1.1e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14370
fragaria_vesca	FvH4_6g52200 FvH4_6g52200 FvH4_6g52200
malus_domestica	MD09G1019800.v1.1 MD17G1020400.v1.1
prunus_persica	Prupe.3G296700_v2.0.a1
pyrus_communis	pycom111g01640 pycom17g01700
rosa_chinensis	RchiOBHm_Chr2g0173701
rosa_laevigata	RLG00000022215
rosa_multiflora	Rmu_co8469107.1_g000001 Rmu_sc0002538.1_g000006
rosa_roxburghii	Rroxscaffold_2G00078670 Rroxscaffold_2G00078690
rosa_rugosa	Rorug02G0572400
rosa_samantha	Rh2AG651300 Rh2BG661800 Rh2CG626700 Rh2CG626800 Rh2DG677000
rosa_wichuraiana	Rw2G053450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	253, 328
AccBSI	CCGCTC	2 cut(s)	12, 342
AciI	CCGC	9 cut(s)	12, 239, 242, 245, 342, 348, 354, 406, 436
AclWI	GGATC	2 cut(s)	153, 279
AcuI	CTGAAG	2 cut(s)	251, 354
AcvI	CACGTG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	204, 487
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	3 cut(s)	163, 187, 377
AluBI	AGCT	6 cut(s)	55, 96, 166, 277, 360, 460
AluI	AGCT	6 cut(s)	55, 96, 166, 277, 360, 460
Alw21I	GWGCWC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	153, 279
ApeKI	GCWGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	195
AsuHPI	GGTGA	2 cut(s)	70, 275
AvaII	GGWCC	1 cut(s)	195
BanI	GGYRCC	2 cut(s)	253, 328
BbrPI	CACGTG	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	126
BceAI	ACGGC	3 cut(s)	96, 167, 247
BisI	GCNGC	4 cut(s)	115, 239, 242, 245
BlsI	GCNGC	4 cut(s)	116, 240, 243, 246
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	2 cut(s)	255, 330
BpiI	GAAGAC	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 487
BseLI	CCNNNNNNNGG	2 cut(s)	204, 487
BseRI	GAGGAG	3 cut(s)	30, 80, 191
BseXI	GCAGC	1 cut(s)	126
BshNI	GGYRCC	2 cut(s)	253, 328
BsiHKAI	GWGCWC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	2 cut(s)	204, 487
BsmI	GAATGC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	4 cut(s)	19, 127, 145, 271
BspACI	CCGC	9 cut(s)	12, 239, 242, 245, 342, 348, 354, 406, 436
BspLI	GGNNCC	2 cut(s)	255, 330
BspPI	GGATC	2 cut(s)	153, 279
BspT107I	GGYRCC	2 cut(s)	253, 328
BsrBI	CCGCTC	2 cut(s)	12, 342
BsrGI	TGTACA	1 cut(s)	213
BssMI	GATC	4 cut(s)	19, 127, 145, 271
Bst4CI	ACNGT	3 cut(s)	253, 328, 426
Bst6I	CTCTTC	2 cut(s)	330, 497
BstAPI	GCANNNNNTGC	2 cut(s)	111, 253
BstAUI	TGTACA	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	103, 156, 236
BstDEI	CTNAG	1 cut(s)	432
BstKTI	GATC	4 cut(s)	22, 130, 148, 274
BstMBI	GATC	4 cut(s)	19, 127, 145, 271
BstMWI	GCNNNNNNNGC	6 cut(s)	102, 111, 120, 244, 253, 262
BstV1I	GCAGC	1 cut(s)	126
BstV2I	GAAGAC	1 cut(s)	234
BtgZI	GCGATG	1 cut(s)	138
Cac8I	GCNNGC	3 cut(s)	103, 156, 236
Cfr13I	GGNCC	1 cut(s)	195
CseI	GACGC	2 cut(s)	16, 106
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	8 cut(s)	55, 96, 154, 166, 238, 277, 360, 460
CviKI_1	RGCY	8 cut(s)	55, 96, 154, 166, 238, 277, 360, 460
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	4 cut(s)	21, 129, 147, 273
DpnII	GATC	4 cut(s)	19, 127, 145, 271
Eam1104I	CTCTTC	2 cut(s)	330, 497
EarI	CTCTTC	2 cut(s)	330, 497
Eco47I	GGWCC	1 cut(s)	195
Eco57I	CTGAAG	2 cut(s)	251, 354
Eco72I	CACGTG	1 cut(s)	108
FaeI	CATG	1 cut(s)	296
FaiI	YATR	5 cut(s)	174, 294, 322, 447, 485
FatI	CATG	1 cut(s)	292
Fnu4HI	GCNGC	4 cut(s)	115, 239, 242, 245
Fsp4HI	GCNGC	4 cut(s)	115, 239, 242, 245
GluI	GCNGC	4 cut(s)	115, 239, 242, 245
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	2 cut(s)	16, 106
Hin1II	CATG	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	3 cut(s)	296, 373, 439
HpaI	GTTAAC	1 cut(s)	78
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	2 cut(s)	70, 275
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	5 cut(s)	24, 52, 132, 199, 456
Hpy188III	TCNNGA	4 cut(s)	31, 143, 184, 269
Hpy8I	GTNNAC	1 cut(s)	78
Hpy99I	CGWCG	5 cut(s)	32, 88, 91, 122, 153
HpyAV	CCTTC	2 cut(s)	55, 481
HpyCH4III	ACNGT	3 cut(s)	253, 328, 426
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	6 cut(s)	102, 111, 120, 244, 253, 262
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	296
KspAI	GTTAAC	1 cut(s)	78
Kzo9I	GATC	4 cut(s)	19, 127, 145, 271
LmnI	GCTCC	3 cut(s)	9, 24, 52
LpnPI	CCDG	7 cut(s)	41, 106, 140, 254, 270, 345, 368
Lsp1109I	GCAGC	1 cut(s)	126
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	4 cut(s)	21, 129, 147, 273
MbiI	CCGCTC	2 cut(s)	12, 342
MboI	GATC	4 cut(s)	19, 127, 145, 271
MboII	GAAGA	3 cut(s)	239, 347, 382
MhlI	GDGCHC	1 cut(s)	107
MnlI	CCTC	8 cut(s)	8, 58, 61, 169, 172, 299, 307, 360
MseI	TTAA	2 cut(s)	77, 219
MslI	CAYNNNNRTG	1 cut(s)	291
MspI	CCGG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	193
MwoI	GCNNNNNNNGC	6 cut(s)	102, 111, 120, 244, 253, 262
NdeII	GATC	4 cut(s)	19, 127, 145, 271
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	2 cut(s)	255, 330
NmeAIII	GCCGAG	2 cut(s)	77, 493
PcsI	WCGNNNNNNNCGW	2 cut(s)	86, 104
PctI	GAATGC	1 cut(s)	193
PfeI	GAWTC	3 cut(s)	296, 373, 439
PkrI	GCNGC	4 cut(s)	116, 240, 243, 246
PmaCI	CACGTG	1 cut(s)	108
PmlI	CACGTG	1 cut(s)	108
Ppu21I	YACGTR	1 cut(s)	108
PspCI	CACGTG	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	255, 330
PspPI	GGNCC	1 cut(s)	195
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	77, 219
SatI	GCNGC	4 cut(s)	115, 239, 242, 245
Sau3AI	GATC	4 cut(s)	19, 127, 145, 271
Sau96I	GGNCC	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	107
SinI	GGWCC	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	291
SsiI	CCGC	9 cut(s)	12, 239, 242, 245, 342, 348, 354, 406, 436
SspI	AATATT	1 cut(s)	310
TaaI	ACNGT	3 cut(s)	253, 328, 426
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	3 cut(s)	30, 72, 148
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	3 cut(s)	241, 244, 247
TfiI	GAWTC	3 cut(s)	296, 373, 439
Tru1I	TTAA	2 cut(s)	77, 219
Tru9I	TTAA	2 cut(s)	77, 219
TseI	GCWGC	1 cut(s)	114
TspDTI	ATGAA	2 cut(s)	462, 500
VpaK11BI	GGWCC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.