Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009406

Physical Location & Seq

Genomic Coordinates Reverse (-)

1102627 .. 1104145

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g01700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCTTGGTCCGACAAGGGACCACTGTACATTGATGGAGGAGATTCCCCACAAACTGTACCTGACTCGATGCATCAGCAGGATCGATCAGCTTTTTCAGCTCGATCATAACAGCAGTACTCCCGATGGGTCAAGTGGGAAGTTATGGAGAGTCCCGGAAGAGGACGGCAGCTTGAAAATGAAGATGGAGCAAAGACTGGCCAGTGTGTTGAGATACAAGGAAAAGAGGCATAACCGGCTCTACTCCAAGCGGATCCGATACCAAGTCCGAAAGCTCAATGCCGAAAAACGACCCCGTATGAAGGGTCGATTCGTGAAGAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

109

Amino Acids

12.98

Weight (kDa)

10.28

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14370
fragaria_vesca	FvH4_6g52200 FvH4_6g52200 FvH4_6g52200
malus_domestica	MD09G1019800.v1.1 MD17G1020400.v1.1
prunus_persica	Prupe.3G296700_v2.0.a1
pyrus_communis	pycom111g01640 pycom17g01700
rosa_chinensis	RchiOBHm_Chr2g0173701
rosa_laevigata	RLG00000022215
rosa_multiflora	Rmu_co8469107.1_g000001 Rmu_sc0002538.1_g000006
rosa_roxburghii	Rroxscaffold_2G00078670 Rroxscaffold_2G00078690
rosa_rugosa	Rorug02G0572400
rosa_samantha	Rh2AG651300 Rh2BG661800 Rh2CG626700 Rh2CG626800 Rh2DG677000
rosa_wichuraiana	Rw2G053450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	3 cut(s)	89, 247, 260
AcoI	YGGCCR	1 cut(s)	198
AfaI	GTAC	3 cut(s)	28, 59, 118
AfiI	CCNNNNNNNGG	2 cut(s)	160, 301
AgsI	TTSAA	1 cut(s)	175
AluBI	AGCT	4 cut(s)	91, 100, 171, 274
AluI	AGCT	4 cut(s)	91, 100, 171, 274
AlwI	GGATC	3 cut(s)	89, 247, 260
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	8, 19
AsuC2I	CCSGG	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	8, 19
BalI	TGGCCA	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	3 cut(s)	28, 119, 178
BceAI	ACGGC	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	155
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
BmcAI	AGTACT	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	2 cut(s)	8, 19
BmgT120I	GGNCC	2 cut(s)	8, 19
BmiI	GGNNCC	2 cut(s)	20, 254
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	59, 81
BpuMI	CCSGG	1 cut(s)	155
Bsa29I	ATCGAT	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 301
Bse118I	RCCGGY	1 cut(s)	234
Bse1I	ACTGG	2 cut(s)	201, 201
BseCI	ATCGAT	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	160, 301
BseNI	ACTGG	2 cut(s)	201, 201
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	180
BshFI	GGCC	1 cut(s)	200
BshVI	ATCGAT	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	155, 235
BslFI	GGGAC	2 cut(s)	32, 137
BslI	CCNNNNNNNGG	2 cut(s)	160, 301
BsmFI	GGGAC	2 cut(s)	32, 137
BsnI	GGCC	1 cut(s)	200
Bsp1407I	TGTACA	1 cut(s)	26
Bsp143I	GATC	4 cut(s)	81, 85, 103, 252
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	1 cut(s)	200
BspDI	ATCGAT	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	20, 254
BspPI	GGATC	3 cut(s)	89, 247, 260
BsrFI	RCCGGY	1 cut(s)	234
BsrGI	TGTACA	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	201, 201
BssAI	RCCGGY	1 cut(s)	234
BssMI	GATC	4 cut(s)	81, 85, 103, 252
Bst4CI	ACNGT	2 cut(s)	26, 57
Bst6I	CTCTTC	2 cut(s)	153, 311
BstAUI	TGTACA	1 cut(s)	26
BstKTI	GATC	4 cut(s)	84, 88, 106, 255
BstMBI	GATC	4 cut(s)	81, 85, 103, 252
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 235
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
Bsu15I	ATCGAT	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	200
BsuTUI	ATCGAT	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	22, 208
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	2 cut(s)	8, 19
ClaI	ATCGAT	1 cut(s)	84
Csp6I	GTAC	3 cut(s)	27, 58, 117
CviJI	RGCY	6 cut(s)	91, 100, 171, 200, 238, 274
CviKI_1	RGCY	6 cut(s)	91, 100, 171, 200, 238, 274
CviQI	GTAC	3 cut(s)	27, 58, 117
DpnI	GATC	4 cut(s)	83, 87, 105, 254
DpnII	GATC	4 cut(s)	81, 85, 103, 252
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	153, 311
EarI	CTCTTC	2 cut(s)	153, 311
Eco47I	GGWCC	2 cut(s)	8, 19
EcoT22I	ATGCAT	1 cut(s)	74
FaiI	YATR	4 cut(s)	108, 145, 231, 299
FaqI	GGGAC	2 cut(s)	32, 137
Fnu4HI	GCNGC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	169
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	2 cut(s)	155, 235
HinfI	GANTC	4 cut(s)	43, 64, 150, 309
HpaII	CCGG	2 cut(s)	155, 235
Hpy188I	TCNGA	3 cut(s)	12, 257, 269
Hpy188III	TCNNGA	2 cut(s)	122, 313
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	2 cut(s)	26, 57
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 235
Kzo9I	GATC	4 cut(s)	81, 85, 103, 252
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	6 cut(s)	64, 74, 168, 182, 214, 248
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	2 cut(s)	59, 81
MalI	GATC	4 cut(s)	83, 87, 105, 254
MboI	GATC	4 cut(s)	81, 85, 103, 252
MboII	GAAGA	2 cut(s)	170, 193
MflI	RGATCY	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	200
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	58, 159
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	3 cut(s)	31, 154, 219
Mox20I	TGGCCA	1 cut(s)	200
Mph1103I	ATGCAT	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	2 cut(s)	155, 235
MspR9I	CCNGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	97, 235
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	4 cut(s)	81, 85, 103, 252
NlaIV	GGNNCC	2 cut(s)	20, 254
NsiI	ATGCAT	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	43, 309
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	2 cut(s)	58, 158
PpsI	GAGTC	2 cut(s)	58, 158
PspN4I	GGNNCC	2 cut(s)	20, 254
PspPI	GGNCC	2 cut(s)	8, 19
PsuI	RGATCY	1 cut(s)	252
RsaI	GTAC	3 cut(s)	28, 59, 118
RsaNI	GTAC	3 cut(s)	27, 58, 117
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	4 cut(s)	81, 85, 103, 252
Sau96I	GGNCC	2 cut(s)	8, 19
ScaI	AGTACT	1 cut(s)	118
SchI	GAGTC	2 cut(s)	58, 159
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	5 cut(s)	63, 93, 102, 173, 276
SfaNI	GCATC	2 cut(s)	59, 81
SinI	GGWCC	2 cut(s)	8, 19
SsiI	CCGC	1 cut(s)	250
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	26, 57
TaqI	TCGA	4 cut(s)	67, 84, 102, 307
TatI	WGTACW	2 cut(s)	26, 116
TfiI	GAWTC	2 cut(s)	43, 309
TscAI	CASTG	2 cut(s)	29, 208
TseI	GCWGC	1 cut(s)	168
TspDTI	ATGAA	2 cut(s)	194, 314
TspRI	CASTG	2 cut(s)	29, 208
VpaK11BI	GGWCC	2 cut(s)	8, 19
ZrmI	AGTACT	1 cut(s)	118
Zsp2I	ATGCAT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.