Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009406

Physical Location & Seq

Genomic Coordinates Reverse (-)

1194930 .. 1199206

Gene Structure 4277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1019800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTGCAACAAGAAGAATCTTCCTGGTCACGACGATCATGTGCAGAGGAGCTCCATGATTGATGATATGATCAAGGAGAAGGAAGAAGAAGAAGAAGATGAATTGATCAAACATTTAGCAGCTCGGAAATCCAGAACAAAAATCAGAAAACCCAAGTTTTTAAGTCTCCGATCCCAGCTCATGTCCGAAGATAGCGGCCAAAGTTACAGAGTACCCAACAAAATCACATCAACGACGGCCAAGGCCCGCCACCGCCACCGCCACCGCCGCAGCCCTCAGCTCAACCTCTTCCCACTGCACCCGGAAACTCGGGTCAATAATGATTTTGAAGATAAAGGGTACATGCAGCAGGACGAGAACGTGGCCTTGTTGTTCGAGTCCGATGGCGGCGCCACTCTCAACGGCCTCCTAACCTCCACAACCACCACAGCCACCGCCACGACGTCGACAATCTCATCCGATCTGGAGGAAGCAGAGTCCTTTTCCTACTACAAGGGACGGGAGGAGTACAGGGAAGAGACAGAGTGTGACATTGTACGGACGGCGATGAGGAGCAGAGAGCGGGAGACGAGCGTGGAGAAGTGGGTGTGTTTCTCGGAGTTGGTGGAGGGAAAGAGGGAGGAGGACTGCTTGACTAGTCCGACGACCAGTACTACTGGTACACACGGCGGCGATGACGGTTGGAATGTCGGTCATCGACGGCGGAGCAGCGGCGGAAAGGGGTTGTCGTTGGCGTTGAAGCTGGATTATGAGGAGATATTGAATGTTTGGTCCGACAAGGGACCACTCTACATTGATGGAGGAGATTCCCCACAAACTGTACCTGACTTACTGCACCAGCAGGATCATCAGCTTTTTCACCTCCATGAGAACGGCAGTACTCCAAATGGTTCCGGTGGGAACTTATGGAGGGTTCCGGAAGAGGACGGCAGCTTGAAAATGAAAATGGAGCAAAGAGAGACCAGTATTTTGAGGTATAAGGAAAAGAGGCGTAACCGGCTCTACTCGAAGCAGATCCGGTACCAAGTCCGAAAACTCAATGCCGAAAACCGACCCCGAATGAAGGGTCGATTCGTGAAGAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

363

Amino Acids

41.66

Weight (kDa)

8.21

Isoelectric Point (pI)

63.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	319 - 361	5.1e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14370
fragaria_vesca	FvH4_6g52200 FvH4_6g52200 FvH4_6g52200
malus_domestica	MD09G1019800.v1.1 MD17G1020400.v1.1
prunus_persica	Prupe.3G296700_v2.0.a1
pyrus_communis	pycom111g01640 pycom17g01700
rosa_chinensis	RchiOBHm_Chr2g0173701
rosa_laevigata	RLG00000022215
rosa_multiflora	Rmu_co8469107.1_g000001 Rmu_sc0002538.1_g000006
rosa_roxburghii	Rroxscaffold_2G00078670 Rroxscaffold_2G00078690
rosa_rugosa	Rorug02G0572400
rosa_samantha	Rh2AG651300 Rh2BG661800 Rh2CG626700 Rh2CG626800 Rh2DG677000
rosa_wichuraiana	Rw2G053450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	446
Acc65I	GGTACC	1 cut(s)	1020
AccB1I	GGYRCC	2 cut(s)	389, 1020
AccBSI	CCGCTC	1 cut(s)	562
AccI	GTMKAC	1 cut(s)	446
AccIII	TCCGGA	1 cut(s)	916
AclWI	GGATC	3 cut(s)	165, 852, 1009
AcoI	YGGCCR	2 cut(s)	196, 237
AcyI	GRCGYC	2 cut(s)	390, 443
AfaI	GTAC	9 cut(s)	213, 341, 509, 537, 652, 661, 822, 880, 1022
AfiI	CCNNNNNNNGG	1 cut(s)	1063
AgsI	TTSAA	4 cut(s)	329, 739, 763, 937
AhlI	ACTAGT	1 cut(s)	635
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	7 cut(s)	51, 122, 178, 280, 742, 853, 933
AluI	AGCT	7 cut(s)	51, 122, 178, 280, 742, 853, 933
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	4 cut(s)	170, 512, 560, 953
AlwI	GGATC	3 cut(s)	165, 852, 1009
Ama87I	CYCGRG	1 cut(s)	309
Aor13HI	TCCGGA	1 cut(s)	916
AoxI	GGCC	5 cut(s)	196, 237, 243, 363, 403
ApeKI	GCWGC	5 cut(s)	119, 270, 346, 708, 930
ArsI	GACNNNNNNTTYG	4 cut(s)	952, 984, 1051, 1083
Asp718I	GGTACC	1 cut(s)	1020
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	3 cut(s)	244, 771, 782
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	851
AvaI	CYCGRG	1 cut(s)	309
AvaII	GGWCC	2 cut(s)	771, 782
BanI	GGYRCC	2 cut(s)	389, 1020
BanII	GRGCYC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	5 cut(s)	131, 282, 358, 720, 942
BccI	CCATC	2 cut(s)	377, 791
BceAI	ACGGC	7 cut(s)	252, 418, 558, 682, 716, 889, 943
BciT130I	CCWGG	1 cut(s)	24
BclI	TGATCA	2 cut(s)	69, 105
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	4 cut(s)	170, 512, 560, 953
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	393
BmcAI	AGTACT	2 cut(s)	652, 880
Bme1390I	CCNGG	2 cut(s)	24, 302
Bme18I	GGWCC	2 cut(s)	771, 782
BmeT110I	CYCGRG	1 cut(s)	309
BmgT120I	GGNCC	3 cut(s)	244, 771, 782
BmiI	GGNNCC	5 cut(s)	391, 783, 892, 915, 1022
BmrFI	CCNGG	2 cut(s)	24, 302
BpmI	CTGGAG	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	302
BsaHI	GRCGYC	2 cut(s)	390, 443
BsaI	GGTCTC	1 cut(s)	953
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	3 cut(s)	893, 916, 1017
Bsc4I	CCNNNNNNNGG	1 cut(s)	1063
Bse118I	RCCGGY	1 cut(s)	996
Bse1I	ACTGG	3 cut(s)	648, 661, 963
BseAI	TCCGGA	1 cut(s)	916
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	1 cut(s)	1063
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	3 cut(s)	648, 661, 963
BseRI	GAGGAG	6 cut(s)	61, 518, 565, 635, 767, 816
BseXI	GCAGC	5 cut(s)	131, 282, 358, 720, 942
BseYI	CCCAGC	1 cut(s)	174
BsgI	GTGCAG	3 cut(s)	62, 281, 818
BshFI	GGCC	5 cut(s)	198, 239, 245, 365, 405
BshNI	GGYRCC	2 cut(s)	389, 1020
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	309
BsiSI	CCGG	5 cut(s)	302, 894, 917, 997, 1018
BslFI	GGGAC	2 cut(s)	510, 795
BslI	CCNNNNNNNGG	1 cut(s)	1063
BsmAI	GTCTC	4 cut(s)	170, 512, 560, 953
BsmBI	CGTCTC	1 cut(s)	560
BsmFI	GGGAC	2 cut(s)	510, 795
BsnI	GGCC	5 cut(s)	198, 239, 245, 365, 405
Bso31I	GGTCTC	1 cut(s)	953
BsoBI	CYCGRG	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp13I	TCCGGA	1 cut(s)	916
Bsp143I	GATC	7 cut(s)	34, 69, 105, 170, 460, 844, 1014
BspANI	GGCC	5 cut(s)	198, 239, 245, 365, 405
BspCNI	CTCAG	1 cut(s)	289
BspEI	TCCGGA	1 cut(s)	916
BspLI	GGNNCC	5 cut(s)	391, 783, 892, 915, 1022
BspPI	GGATC	3 cut(s)	165, 852, 1009
BspT107I	GGYRCC	2 cut(s)	389, 1020
BspTNI	GGTCTC	1 cut(s)	953
BsrBI	CCGCTC	1 cut(s)	562
BsrFI	RCCGGY	1 cut(s)	996
BsrI	ACTGG	3 cut(s)	648, 661, 963
BssAI	RCCGGY	1 cut(s)	996
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	7 cut(s)	34, 69, 105, 170, 460, 844, 1014
BssNI	GRCGYC	2 cut(s)	390, 443
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	680, 820
Bst6I	CTCTTC	4 cut(s)	293, 510, 915, 1073
BstACI	GRCGYC	2 cut(s)	390, 443
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	455
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	7 cut(s)	37, 72, 108, 173, 463, 847, 1017
BstMAI	GTCTC	4 cut(s)	170, 512, 560, 953
BstMBI	GATC	7 cut(s)	34, 69, 105, 170, 460, 844, 1014
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 997
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	2 cut(s)	22, 300
BstV1I	GCAGC	5 cut(s)	131, 282, 358, 720, 942
BstX2I	RGATCY	1 cut(s)	1014
BstYI	RGATCY	1 cut(s)	1014
BsuRI	GGCC	5 cut(s)	198, 239, 245, 365, 405
BtgZI	GCGATG	2 cut(s)	560, 687
BtsCI	GGATG	1 cut(s)	455
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	247
CfoI	GCGC	1 cut(s)	392
Cfr10I	RCCGGY	1 cut(s)	996
Cfr13I	GGNCC	3 cut(s)	244, 771, 782
Csp6I	GTAC	9 cut(s)	212, 340, 508, 536, 651, 660, 821, 879, 1021
CviAII	CATG	5 cut(s)	38, 55, 181, 343, 866
CviQI	GTAC	9 cut(s)	212, 340, 508, 536, 651, 660, 821, 879, 1021
DdeI	CTNAG	1 cut(s)	276
DinI	GGCGCC	1 cut(s)	391
DpnI	GATC	7 cut(s)	36, 71, 107, 172, 462, 846, 1016
DpnII	GATC	7 cut(s)	34, 69, 105, 170, 460, 844, 1014
EaeI	YGGCCR	2 cut(s)	196, 237
Eam1104I	CTCTTC	4 cut(s)	293, 510, 915, 1073
EarI	CTCTTC	4 cut(s)	293, 510, 915, 1073
EciI	GGCGGA	2 cut(s)	718, 729
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	953
Eco47I	GGWCC	2 cut(s)	771, 782
Eco53kI	GAGCTC	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	53
EgeI	GGCGCC	1 cut(s)	391
EheI	GGCGCC	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	560
FaeI	CATG	5 cut(s)	41, 58, 184, 346, 869
FaiI	YATR	9 cut(s)	39, 56, 68, 182, 344, 750, 867, 907, 978
FaqI	GGGAC	2 cut(s)	510, 795
FatI	CATG	5 cut(s)	37, 54, 180, 342, 865
FauI	CCCGC	2 cut(s)	254, 555
FbaI	TGATCA	2 cut(s)	69, 105
FblI	GTMKAC	1 cut(s)	446
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	636
GlaI	GCGC	1 cut(s)	391
GsaI	CCCAGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	485
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	5 cut(s)	198, 239, 245, 365, 405
HapII	CCGG	5 cut(s)	302, 894, 917, 997, 1018
HhaI	GCGC	1 cut(s)	392
Hin1I	GRCGYC	2 cut(s)	390, 443
Hin1II	CATG	5 cut(s)	41, 58, 184, 346, 869
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HinfI	GANTC	5 cut(s)	16, 377, 476, 806, 1071
HpaII	CCGG	5 cut(s)	302, 894, 917, 997, 1018
HphI	GGTGA	1 cut(s)	851
Hpy166II	GTNNAC	2 cut(s)	447, 662
Hpy188III	TCNNGA	5 cut(s)	29, 132, 464, 917, 1075
Hpy8I	GTNNAC	2 cut(s)	447, 662
Hpy99I	CGWCG	6 cut(s)	35, 238, 445, 448, 646, 702
HpyAV	CCTTC	2 cut(s)	73, 1057
HpyCH4III	ACNGT	2 cut(s)	680, 820
HpyCH4IV	ACGT	2 cut(s)	360, 443
HpyCH4V	TGCA	5 cut(s)	6, 43, 298, 346, 835
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 997
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	2 cut(s)	360, 443
Hsp92I	GRCGYC	2 cut(s)	390, 443
Hsp92II	CATG	5 cut(s)	41, 58, 184, 346, 869
HspAI	GCGC	1 cut(s)	390
KasI	GGCGCC	1 cut(s)	389
Kpn2I	TCCGGA	1 cut(s)	916
KpnI	GGTACC	1 cut(s)	1024
Ksp22I	TGATCA	2 cut(s)	69, 105
Kzo9I	GATC	7 cut(s)	34, 69, 105, 170, 460, 844, 1014
LmnI	GCTCC	5 cut(s)	48, 56, 552, 705, 949
Lsp1109I	GCAGC	5 cut(s)	131, 282, 358, 720, 942
MaeI	CTAG	1 cut(s)	636
MaeII	ACGT	2 cut(s)	360, 443
MaeIII	GTNAC	4 cut(s)	26, 203, 527, 992
MalI	GATC	7 cut(s)	36, 71, 107, 172, 462, 846, 1016
MbiI	CCGCTC	1 cut(s)	562
MboI	GATC	7 cut(s)	34, 69, 105, 170, 460, 844, 1014
MflI	RGATCY	1 cut(s)	1014
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	1 cut(s)	101
Mly113I	GGCGCC	1 cut(s)	390
MlyI	GAGTC	2 cut(s)	386, 485
MmeI	TCCRAC	3 cut(s)	662, 665, 798
MroI	TCCGGA	1 cut(s)	916
MseI	TTAA	1 cut(s)	161
MslI	CAYNNNNRTG	1 cut(s)	864
MspA1I	CMGCKG	1 cut(s)	711
MspI	CCGG	5 cut(s)	302, 894, 917, 997, 1018
MspR9I	CCNGG	2 cut(s)	24, 302
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	267, 997
NarI	GGCGCC	1 cut(s)	390
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	7 cut(s)	34, 69, 105, 170, 460, 844, 1014
NlaIII	CATG	5 cut(s)	41, 58, 184, 346, 869
NlaIV	GGNNCC	5 cut(s)	391, 783, 892, 915, 1022
NmuCI	GTSAC	2 cut(s)	26, 527
NspI	RCATGY	1 cut(s)	346
PfeI	GAWTC	3 cut(s)	16, 806, 1071
PleI	GAGTC	2 cut(s)	385, 484
PluTI	GGCGCC	1 cut(s)	393
PpsI	GAGTC	2 cut(s)	385, 484
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	5 cut(s)	391, 783, 892, 915, 1022
PspPI	GGNCC	3 cut(s)	244, 771, 782
PsuI	RGATCY	1 cut(s)	1014
RsaI	GTAC	9 cut(s)	213, 341, 509, 537, 652, 661, 822, 880, 1022
RsaNI	GTAC	9 cut(s)	212, 340, 508, 536, 651, 660, 821, 879, 1021
RseI	CAYNNNNRTG	1 cut(s)	864
SacI	GAGCTC	1 cut(s)	53
SalI	GTCGAC	1 cut(s)	445
SaqAI	TTAA	1 cut(s)	161
Sau3AI	GATC	7 cut(s)	34, 69, 105, 170, 460, 844, 1014
Sau96I	GGNCC	3 cut(s)	244, 771, 782
ScaI	AGTACT	2 cut(s)	652, 880
SchI	GAGTC	2 cut(s)	386, 485
ScrFI	CCNGG	2 cut(s)	24, 302
SduI	GDGCHC	1 cut(s)	53
SfoI	GGCGCC	1 cut(s)	391
SinI	GGWCC	2 cut(s)	771, 782
SmiMI	CAYNNNNRTG	1 cut(s)	864
SpeI	ACTAGT	1 cut(s)	635
Sse9I	AATT	1 cut(s)	101
SspDI	GGCGCC	1 cut(s)	389
SspMI	CTAG	1 cut(s)	636
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	22, 300
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	680, 820
TaiI	ACGT	2 cut(s)	363, 446
TaqI	TCGA	5 cut(s)	375, 446, 697, 1007, 1069
TaqII	GACCGA	1 cut(s)	680
TasI	AATT	1 cut(s)	101
TatI	WGTACW	3 cut(s)	507, 650, 878
TauI	GCSGC	5 cut(s)	198, 270, 390, 672, 714
TfiI	GAWTC	3 cut(s)	16, 806, 1071
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	2 cut(s)	26, 527
TseI	GCWGC	5 cut(s)	119, 270, 346, 708, 930
Tsp45I	GTSAC	2 cut(s)	26, 527
TspDTI	ATGAA	3 cut(s)	114, 956, 1076
TspGWI	ACGGA	1 cut(s)	553
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	2 cut(s)	771, 782
XceI	RCATGY	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	446
XspI	CTAG	1 cut(s)	636
ZraI	GACGTC	1 cut(s)	444
ZrmI	AGTACT	2 cut(s)	652, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.