Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009406

Physical Location & Seq

Genomic Coordinates Reverse (-)

1537336 .. 1540117

Gene Structure 2782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1020400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTGCAACAAGAAGAGTCCTTCTGGTCACGACGATCATGTGCAGAGGAGCTCAATGATTGATGATATGATCAAGAAAGAAGAAGACGATGAAGAAGAAGACGAACTGATTAAAAATTTAGCAGCTCGGAAATTCAGAACAAAAACCAGAAAACCCAAGTTTTTAAGTCTCCGATCCCAACTCATCTCCGAAGATAACGGACAAAGTTACAGAGCACCCAACAAAGTTACATCAACGAAGGCCAAGACCCACCACCGCCAACGCCGCCGCCGCCGCCCCCAGCTCAACCTTTTTCCGCTGCACCCGGAAAATCGGGTCGAGAATGATTTTGAAGATAAAGGGTACATGCAACAGGACGAGAACGTGGCCTTGCTGTTCGAGTCTGACGGCAGCGCCACTCTCAACGGCCTCCTAACCTCCACCGCCACCACGTCGACAATGTCATCCGATCTGGAGGAAGCAGAGTCCTTTTCCTACTACAGGGGACGGGATGAGTATAGAGAAGAAACAGAGTGTGACATTGTGCGGACGGCGATGAGGAGCAGAGAGAGGGAGACAAGCGTGGAGAAGTGGGTGTGTTTCTCGGAGTTGGTGGAGGAGAAGAGAGAGAAGGACTGCTTGGCTAGCTCGACGACAAGTACTACCGGTACACGAGGCGGAGGTGATGGTCGGGATGTTGGTCATCGACGGTGGAGCTGCGGCGGAAAGGGGCTGTCGTTGGCGTTGAAGCTGGATTATGAGGAGATATTGAATGCTTGGTCCGATAAGGGACCACTGTACATTGATGGAGGAGATTCCCCACAAACTGTACCTGACTTGATGCATCAGCAGGATCATCAGCTTTTTCAGCTCAATGATAACAGCAGTACTCCCGATGGGTCAGGTGGGAACTTAAGGAGAGTCCCGGAAGAGGACGGCAGCTTAAAAATGAAGATGGAGCAAAGACTGGCCAGTGTGTTGAGATACAAGGAAAAGAGGCTTAACCGGCTCTACTCCAAGCGGATCCGATACCAAGTGCGAAAGCTCAATGCCGAACAACGACCCCGTATGAAGGGTCGATTCGTGAAGAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

359

Amino Acids

41.35

Weight (kDa)

8.78

Isoelectric Point (pI)

63.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	315 - 357	2.3e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14370
fragaria_vesca	FvH4_6g52200 FvH4_6g52200 FvH4_6g52200
malus_domestica	MD09G1019800.v1.1 MD17G1020400.v1.1
prunus_persica	Prupe.3G296700_v2.0.a1
pyrus_communis	pycom111g01640 pycom17g01700
rosa_chinensis	RchiOBHm_Chr2g0173701
rosa_laevigata	RLG00000022215
rosa_multiflora	Rmu_co8469107.1_g000001 Rmu_sc0002538.1_g000006
rosa_roxburghii	Rroxscaffold_2G00078670 Rroxscaffold_2G00078690
rosa_rugosa	Rorug02G0572400
rosa_samantha	Rh2AG651300 Rh2BG661800 Rh2CG626700 Rh2CG626800 Rh2DG677000
rosa_wichuraiana	Rw2G053450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	434
AclWI	GGATC	4 cut(s)	168, 840, 997, 1010
AcoI	YGGCCR	1 cut(s)	948
AcsI	RAATTY	2 cut(s)	115, 131
AfaI	GTAC	6 cut(s)	344, 640, 649, 779, 810, 868
AfiI	CCNNNNNNNGG	3 cut(s)	480, 910, 1051
AflII	CTTAAG	1 cut(s)	892
AgeI	ACCGGT	1 cut(s)	644
AgsI	TTSAA	3 cut(s)	332, 727, 751
AjiI	CACGTC	1 cut(s)	432
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
Alw21I	GWGCWC	2 cut(s)	53, 217
Alw26I	GTCTC	2 cut(s)	173, 548
AlwI	GGATC	4 cut(s)	168, 840, 997, 1010
AoxI	GGCC	4 cut(s)	240, 366, 406, 948
ApeKI	GCWGC	5 cut(s)	122, 298, 390, 696, 918
ApoI	RAATTY	2 cut(s)	115, 131
AsiGI	ACCGGT	1 cut(s)	644
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	759, 770
AsuC2I	CCSGG	2 cut(s)	305, 905
AsuHPI	GGTGA	1 cut(s)	674
AsuNHI	GCTAGC	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	759, 770
BalI	TGGCCA	1 cut(s)	950
BamHI	GGATCC	1 cut(s)	1002
BanII	GRGCYC	1 cut(s)	53
BauI	CACGAG	1 cut(s)	651
BbsI	GAAGAC	2 cut(s)	90, 105
Bbv12I	GWGCWC	2 cut(s)	53, 217
BbvI	GCAGC	5 cut(s)	134, 285, 402, 683, 930
BccI	CCATC	4 cut(s)	659, 779, 869, 928
BceAI	ACGGC	4 cut(s)	403, 421, 546, 931
BclI	TGATCA	1 cut(s)	69
BcnI	CCSGG	2 cut(s)	305, 905
BcoDI	GTCTC	2 cut(s)	173, 548
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	1 cut(s)	478
BfoI	RGCGCY	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	892
BmcAI	AGTACT	2 cut(s)	640, 868
Bme1390I	CCNGG	2 cut(s)	305, 905
Bme18I	GGWCC	2 cut(s)	759, 770
BmgBI	CACGTC	1 cut(s)	432
BmgT120I	GGNCC	2 cut(s)	759, 770
BmiI	GGNNCC	2 cut(s)	771, 1004
BmrFI	CCNGG	2 cut(s)	305, 905
BmsI	GCATC	2 cut(s)	810, 832
BmtI	GCTAGC	1 cut(s)	627
BpiI	GAAGAC	2 cut(s)	90, 105
BpmI	CTGGAG	1 cut(s)	473
BpuMI	CCSGG	2 cut(s)	305, 905
BsaWI	WCCGGW	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	3 cut(s)	480, 910, 1051
Bse118I	RCCGGY	2 cut(s)	644, 984
Bse1I	ACTGG	2 cut(s)	951, 951
BseGI	GGATG	3 cut(s)	443, 496, 679
BseLI	CCNNNNNNNGG	3 cut(s)	480, 910, 1051
BseNI	ACTGG	2 cut(s)	951, 951
BseRI	GAGGAG	5 cut(s)	61, 553, 611, 755, 804
BseXI	GCAGC	5 cut(s)	134, 285, 402, 683, 930
BseYI	CCCAGC	1 cut(s)	279
BsgI	GTGCAG	2 cut(s)	62, 284
BshFI	GGCC	4 cut(s)	242, 368, 408, 950
BshTI	ACCGGT	1 cut(s)	644
BsiHKAI	GWGCWC	2 cut(s)	53, 217
BsiSI	CCGG	4 cut(s)	305, 645, 905, 985
BslFI	GGGAC	3 cut(s)	498, 783, 887
BslI	CCNNNNNNNGG	3 cut(s)	480, 910, 1051
BsmAI	GTCTC	2 cut(s)	173, 548
BsmFI	GGGAC	3 cut(s)	498, 783, 887
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	4 cut(s)	242, 368, 408, 950
Bsp1286I	GDGCHC	2 cut(s)	53, 217
Bsp1407I	TGTACA	1 cut(s)	777
Bsp143I	GATC	6 cut(s)	34, 69, 173, 448, 832, 1002
BspANI	GGCC	4 cut(s)	242, 368, 408, 950
BspLI	GGNNCC	2 cut(s)	771, 1004
BspOI	GCTAGC	1 cut(s)	627
BspPI	GGATC	4 cut(s)	168, 840, 997, 1010
BspTI	CTTAAG	1 cut(s)	892
BsrFI	RCCGGY	2 cut(s)	644, 984
BsrGI	TGTACA	1 cut(s)	777
BsrI	ACTGG	2 cut(s)	951, 951
BssAI	RCCGGY	2 cut(s)	644, 984
BssMI	GATC	6 cut(s)	34, 69, 173, 448, 832, 1002
BssSI	CACGAG	1 cut(s)	651
Bst2BI	CACGAG	1 cut(s)	651
Bst4CI	ACNGT	3 cut(s)	690, 777, 808
Bst6I	CTCTTC	4 cut(s)	8, 596, 903, 1061
BstAFI	CTTAAG	1 cut(s)	892
BstAUI	TGTACA	1 cut(s)	777
BstC8I	GCNNGC	1 cut(s)	625
BstENI	CCTNNNNNAGG	1 cut(s)	478
BstF5I	GGATG	3 cut(s)	443, 496, 679
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	6 cut(s)	37, 72, 176, 451, 835, 1005
BstMAI	GTCTC	2 cut(s)	173, 548
BstMBI	GATC	6 cut(s)	34, 69, 173, 448, 832, 1002
BstMWI	GCNNNNNNNGC	6 cut(s)	264, 270, 273, 624, 847, 985
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	2 cut(s)	303, 903
BstSFI	CTRYAG	1 cut(s)	478
BstV1I	GCAGC	5 cut(s)	134, 285, 402, 683, 930
BstV2I	GAAGAC	2 cut(s)	90, 105
BstX2I	RGATCY	1 cut(s)	1002
BstYI	RGATCY	1 cut(s)	1002
BsuRI	GGCC	4 cut(s)	242, 368, 408, 950
BtgZI	GCGATG	1 cut(s)	548
BtrI	CACGTC	1 cut(s)	432
BtsCI	GGATG	3 cut(s)	443, 496, 679
BtsIMutI	CAGTG	2 cut(s)	773, 958
Cac8I	GCNNGC	1 cut(s)	625
CfoI	GCGC	1 cut(s)	395
Cfr10I	RCCGGY	2 cut(s)	644, 984
Cfr13I	GGNCC	2 cut(s)	759, 770
Csp6I	GTAC	6 cut(s)	343, 639, 648, 778, 809, 867
CspAI	ACCGGT	1 cut(s)	644
CviAII	CATG	2 cut(s)	38, 346
CviQI	GTAC	6 cut(s)	343, 639, 648, 778, 809, 867
DpnI	GATC	6 cut(s)	36, 71, 175, 450, 834, 1004
DpnII	GATC	6 cut(s)	34, 69, 173, 448, 832, 1002
EaeI	YGGCCR	1 cut(s)	948
Eam1104I	CTCTTC	4 cut(s)	8, 596, 903, 1061
EarI	CTCTTC	4 cut(s)	8, 596, 903, 1061
EciI	GGCGGA	2 cut(s)	672, 717
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	2 cut(s)	759, 770
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	478
EcoT22I	ATGCAT	1 cut(s)	825
EcoT38I	GRGCYC	1 cut(s)	53
FaeI	CATG	2 cut(s)	41, 349
FaiI	YATR	6 cut(s)	39, 68, 347, 498, 738, 1049
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FaqI	GGGAC	3 cut(s)	498, 783, 887
FatI	CATG	2 cut(s)	37, 345
FbaI	TGATCA	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	434
FokI	GGATG	3 cut(s)	430, 503, 686
FriOI	GRGCYC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	624
GlaI	GCGC	1 cut(s)	394
GsaI	CCCAGC	1 cut(s)	283
GsuI	CTGGAG	1 cut(s)	473
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	4 cut(s)	242, 368, 408, 950
HapII	CCGG	4 cut(s)	305, 645, 905, 985
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	2 cut(s)	41, 349
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HinfI	GANTC	6 cut(s)	16, 380, 464, 794, 900, 1059
HpaII	CCGG	4 cut(s)	305, 645, 905, 985
HphI	GGTGA	1 cut(s)	674
Hpy166II	GTNNAC	2 cut(s)	435, 650
Hpy188I	TCNGA	9 cut(s)	129, 137, 173, 190, 385, 448, 586, 763, 1007
Hpy188III	TCNNGA	7 cut(s)	29, 73, 319, 452, 671, 872, 1063
Hpy8I	GTNNAC	2 cut(s)	435, 650
Hpy99I	CGWCG	4 cut(s)	35, 436, 634, 690
HpyAV	CCTTC	4 cut(s)	30, 232, 604, 1045
HpyCH4III	ACNGT	3 cut(s)	690, 777, 808
HpyCH4IV	ACGT	2 cut(s)	363, 431
HpyCH4V	TGCA	5 cut(s)	6, 43, 301, 349, 823
HpyF10VI	GCNNNNNNNGC	6 cut(s)	264, 270, 273, 624, 847, 985
HpySE526I	ACGT	2 cut(s)	363, 431
Hsp92II	CATG	2 cut(s)	41, 349
HspAI	GCGC	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	6 cut(s)	34, 69, 173, 448, 832, 1002
LmnI	GCTCC	4 cut(s)	48, 540, 693, 937
Lsp1109I	GCAGC	5 cut(s)	134, 285, 402, 683, 930
LweI	GCATC	2 cut(s)	810, 832
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	2 cut(s)	363, 431
MaeIII	GTNAC	4 cut(s)	26, 206, 226, 515
MalI	GATC	6 cut(s)	36, 71, 175, 450, 834, 1004
MboI	GATC	6 cut(s)	34, 69, 173, 448, 832, 1002
MflI	RGATCY	1 cut(s)	1002
MhlI	GDGCHC	2 cut(s)	53, 217
MlsI	TGGCCA	1 cut(s)	950
MluCI	AATT	3 cut(s)	115, 131, 1072
MluNI	TGGCCA	1 cut(s)	950
MlyI	GAGTC	4 cut(s)	25, 389, 473, 909
Mox20I	TGGCCA	1 cut(s)	950
Mph1103I	ATGCAT	1 cut(s)	825
MscI	TGGCCA	1 cut(s)	950
MseI	TTAA	5 cut(s)	111, 164, 893, 923, 981
Msp20I	TGGCCA	1 cut(s)	950
MspA1I	CMGCKG	1 cut(s)	298
MspCI	CTTAAG	1 cut(s)	892
MspI	CCGG	4 cut(s)	305, 645, 905, 985
MspR9I	CCNGG	2 cut(s)	305, 905
Mva1269I	GAATGC	1 cut(s)	757
MwoI	GCNNNNNNNGC	6 cut(s)	264, 270, 273, 624, 847, 985
NciI	CCSGG	2 cut(s)	305, 905
NdeII	GATC	6 cut(s)	34, 69, 173, 448, 832, 1002
NheI	GCTAGC	1 cut(s)	623
NlaIII	CATG	2 cut(s)	41, 349
NlaIV	GGNNCC	2 cut(s)	771, 1004
NmuCI	GTSAC	2 cut(s)	26, 515
NsiI	ATGCAT	1 cut(s)	825
NspI	RCATGY	1 cut(s)	349
PctI	GAATGC	1 cut(s)	757
PfeI	GAWTC	2 cut(s)	794, 1059
PflFI	GACNNNGTC	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	903
PinAI	ACCGGT	1 cut(s)	644
PleI	GAGTC	4 cut(s)	24, 388, 472, 908
PpsI	GAGTC	4 cut(s)	24, 388, 472, 908
Psp124BI	GAGCTC	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	771, 1004
PspPI	GGNCC	2 cut(s)	759, 770
PsuI	RGATCY	1 cut(s)	1002
PsyI	GACNNNGTC	1 cut(s)	439
RsaI	GTAC	6 cut(s)	344, 640, 649, 779, 810, 868
RsaNI	GTAC	6 cut(s)	343, 639, 648, 778, 809, 867
SacI	GAGCTC	1 cut(s)	53
SalI	GTCGAC	1 cut(s)	433
SaqAI	TTAA	5 cut(s)	111, 164, 893, 923, 981
Sau3AI	GATC	6 cut(s)	34, 69, 173, 448, 832, 1002
Sau96I	GGNCC	2 cut(s)	759, 770
ScaI	AGTACT	2 cut(s)	640, 868
SchI	GAGTC	4 cut(s)	25, 389, 473, 909
ScrFI	CCNGG	2 cut(s)	305, 905
SduI	GDGCHC	2 cut(s)	53, 217
SfaNI	GCATC	2 cut(s)	810, 832
SfcI	CTRYAG	1 cut(s)	478
SinI	GGWCC	2 cut(s)	759, 770
SmlI	CTYRAG	1 cut(s)	892
SmoI	CTYRAG	1 cut(s)	892
Sse9I	AATT	3 cut(s)	115, 131, 1072
SspMI	CTAG	1 cut(s)	624
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	303, 903
TaaI	ACNGT	3 cut(s)	690, 777, 808
TaiI	ACGT	2 cut(s)	366, 434
TaqI	TCGA	6 cut(s)	318, 378, 434, 629, 685, 1057
TasI	AATT	3 cut(s)	115, 131, 1072
TatI	WGTACW	3 cut(s)	638, 777, 866
TauI	GCSGC	5 cut(s)	267, 270, 273, 276, 702
TfiI	GAWTC	2 cut(s)	794, 1059
Tru1I	TTAA	5 cut(s)	111, 164, 893, 923, 981
Tru9I	TTAA	5 cut(s)	111, 164, 893, 923, 981
TscAI	CASTG	2 cut(s)	780, 958
TseFI	GTSAC	2 cut(s)	26, 515
TseI	GCWGC	5 cut(s)	122, 298, 390, 696, 918
Tsp45I	GTSAC	2 cut(s)	26, 515
TspDTI	ATGAA	3 cut(s)	105, 944, 1064
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	780, 958
Tth111I	GACNNNGTC	1 cut(s)	439
Vha464I	CTTAAG	1 cut(s)	892
VpaK11BI	GGWCC	2 cut(s)	759, 770
XagI	CCTNNNNNAGG	1 cut(s)	478
XapI	RAATTY	2 cut(s)	115, 131
XceI	RCATGY	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	434
XspI	CTAG	1 cut(s)	624
ZrmI	AGTACT	2 cut(s)	640, 868
Zsp2I	ATGCAT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.