FvH4_6g52200

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
38528686 .. 38532070
3385 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52200.t1

Sequence Viewer

Length: 1089 bp
ATGTGCCACAACAAGAACAGTCCACCTCCGAATCATGACCGTCACGTGAAGCTGATTCAGACCAGGTCGATCTCCATGATGAAGATCATCAAGGAAGAAGAAGAAGAAGTTGAAGAAGAAATCAAGCCTGCGCAAAAACCGAAGCGAGCGGTGGCGGCACGGAAGTCGAGGAAGAAGAGAAGCCGGAGGAAAAAGCCGAAGTACTTGAGCCTTCGCTCTTCGCGCCTCTCCGCCCGAAACGACGCCGTTTCAGCCACCGCGGTTGATGACGTGGACTCGAAGATGACGGAGGCTGCGGCGACGAGGCGCGGACAGCAGCAGCAGCAGCAGCTTAATCTGTTTCCGTTGCATCCGGAGCTAAACGCGGCGGAGGCTGCGGCGGCGGCGGACCACCAGTCCGACGACAGCGTGGCGTTGCTGTTCGAATCCGACGGCGGAGCTACTCTCCACGGGCTGCTCACCTCCGCCGACACCGCCACCACCACGACGACGTCGACAATGTCGTCCGATCATGATCAGGCCGAGTCCAATTACGGCTACCGCCGCGGCGGCGGCGACGACATCGTGCGGACGGCGATGAGGGGGAGCGGGGGAGATCGGAGCGTCGGGAAGTGGGTGTGTTACTCGGAGCTGGTGAAGGAGGAGGTCGAGTTAACGGCGACGACGAGCTCGGCGAGCACGTGTTGCAGCGTCGGCGATGATCGGAAAAGTCATCAGGATCAACGGCTGGCGTTGAAGCTTGACTATGAGGAGGTGTTGAATGCTTGGTCCGATAAGGGCTCGCTGTACATTAAAACCGAAGACGGCGAGCCGCCGCAAACGGTGCCGGACTTGCTTCAGGATCAGCTCTTTCAGCACCTCCATGATTCCAGTGCCAATATTGAGGATTTATGGAAGGTGCCTGAAGAGGAAGAGGATGGTAGCTTGGAAAGGAAGAGGATGCAAAGACAGGAGAGTTTATTGAGATACAAGCGGAAAAGGGAGAACAGGCTGTTTTCTAAGCAGATTCGGTATGAAGTTCGGAAGTTAAATGCTGAGAAACGACCCCGTGTTAAGATAGACAGTACCATTCACATGCCAGTCAATTAA

Protein Analysis

363

Amino Acids

40.88

Weight (kDa)

7.71

Isoelectric Point (pI)

62.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 316 - 352 7.2e-13 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 502
AatII GACGTC 1 cut(s) 494
Acc16I TGCGCA 1 cut(s) 132
AccB1I GGYRCC 2 cut(s) 823, 898
AccBSI CCGCTC 2 cut(s) 149, 588
AccI GTMKAC 1 cut(s) 494
AccII CGCG 5 cut(s) 223, 260, 309, 365, 546
AccIII TCCGGA 1 cut(s) 352
AclWI GGATC 2 cut(s) 726, 849
AcuI CTGAAG 2 cut(s) 821, 924
AcvI CACGTG 2 cut(s) 46, 681
AcyI GRCGYC 2 cut(s) 243, 491
AfaI GTAC 3 cut(s) 203, 788, 1066
AflIII ACRYGT 1 cut(s) 680
AgsI TTSAA 3 cut(s) 113, 736, 760
AhdI GACNNNNNGTC 1 cut(s) 394
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 9 cut(s) 52, 331, 358, 440, 631, 669, 739, 847, 924
AluI AGCT 9 cut(s) 52, 331, 358, 440, 631, 669, 739, 847, 924
Alw21I GWGCWC 2 cut(s) 671, 680
AlwI GGATC 2 cut(s) 726, 849
Aor13HI TCCGGA 1 cut(s) 352
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 9 cut(s) 293, 316, 319, 322, 325, 328, 374, 454, 687
AspLEI GCGC 3 cut(s) 133, 225, 309
AspS9I GGNCC 2 cut(s) 388, 768
AsuHPI GGTGA 2 cut(s) 451, 646
AsuII TTCGAA 1 cut(s) 423
AvaII GGWCC 2 cut(s) 388, 768
BanI GGYRCC 2 cut(s) 823, 898
BanII GRGCYC 2 cut(s) 671, 782
BbrPI CACGTG 2 cut(s) 46, 681
BbsI GAAGAC 1 cut(s) 807
Bbv12I GWGCWC 2 cut(s) 671, 680
BbvI GCAGC 9 cut(s) 280, 328, 331, 334, 337, 340, 361, 441, 699
BccI CCATC 1 cut(s) 911
BceAI ACGGC 7 cut(s) 230, 448, 550, 588, 672, 740, 820
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BciT130I CCWGG 1 cut(s) 64
BclI TGATCA 1 cut(s) 514
BglI GCCNNNNNGGC 1 cut(s) 549
BmcAI AGTACT 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 2 cut(s) 388, 768
BmeRI GACNNNNNGTC 1 cut(s) 394
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 388, 768
BmiI GGNNCC 2 cut(s) 825, 900
BmrFI CCNGG 1 cut(s) 64
BmsI GCATC 2 cut(s) 358, 930
BpiI GAAGAC 1 cut(s) 807
BplI GAGNNNNNCTC 2 cut(s) 429, 461
Bpu14I TTCGAA 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 226
BsaAI YACGTR 2 cut(s) 46, 681
BsaBI GATNNNNATC 2 cut(s) 83, 513
BsaHI GRCGYC 2 cut(s) 243, 491
BsaJI CCNNGG 3 cut(s) 258, 448, 544
BsaWI WCCGGW 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 635, 665
Bse1I ACTGG 3 cut(s) 394, 870, 1079
Bse8I GATNNNNATC 2 cut(s) 83, 513
BseAI TCCGGA 1 cut(s) 352
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 3 cut(s) 258, 448, 544
BseGI GGATG 3 cut(s) 349, 922, 945
BseJI GATNNNNATC 2 cut(s) 83, 513
BseMII CTCAG 1 cut(s) 1026
BseNI ACTGG 3 cut(s) 394, 870, 1079
BseRI GAGGAG 2 cut(s) 656, 764
BseXI GCAGC 9 cut(s) 280, 328, 331, 334, 337, 340, 361, 441, 699
Bsh1236I CGCG 5 cut(s) 223, 260, 309, 365, 546
BshFI GGCC 1 cut(s) 521
BshNI GGYRCC 2 cut(s) 823, 898
BsiHKAI GWGCWC 2 cut(s) 671, 680
BsiSI CCGG 3 cut(s) 184, 353, 827
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 1 cut(s) 521
Bsp119I TTCGAA 1 cut(s) 423
Bsp1286I GDGCHC 3 cut(s) 671, 680, 782
Bsp13I TCCGGA 1 cut(s) 352
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 8 cut(s) 69, 84, 508, 514, 595, 700, 718, 841
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 1 cut(s) 1027
BspEI TCCGGA 1 cut(s) 352
BspFNI CGCG 5 cut(s) 223, 260, 309, 365, 546
BspHI TCATGA 2 cut(s) 34, 511
BspLI GGNNCC 2 cut(s) 825, 900
BspPI GGATC 2 cut(s) 726, 849
BspQI GCTCTTC 1 cut(s) 223
BspT104I TTCGAA 1 cut(s) 423
BspT107I GGYRCC 2 cut(s) 823, 898
BsrBI CCGCTC 2 cut(s) 149, 588
BsrGI TGTACA 1 cut(s) 786
BsrI ACTGG 3 cut(s) 394, 870, 1079
BssECI CCNNGG 3 cut(s) 258, 448, 544
BssMI GATC 8 cut(s) 69, 84, 508, 514, 595, 700, 718, 841
BssNI GRCGYC 2 cut(s) 243, 491
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 4 cut(s) 20, 41, 823, 1064
Bst6I CTCTTC 5 cut(s) 170, 223, 900, 906, 929
BstACI GRCGYC 2 cut(s) 243, 491
BstAPI GCANNNNNTGC 2 cut(s) 684, 823
BstAUI TGTACA 1 cut(s) 786
BstBAI YACGTR 2 cut(s) 46, 681
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 6 cut(s) 129, 147, 676, 729, 782, 809
BstDEI CTNAG 2 cut(s) 999, 1035
BstDSI CCRYGG 3 cut(s) 258, 448, 544
BstF5I GGATG 3 cut(s) 349, 922, 945
BstFNI CGCG 5 cut(s) 223, 260, 309, 365, 546
BstHHI GCGC 3 cut(s) 133, 225, 309
BstKTI GATC 8 cut(s) 72, 87, 511, 517, 598, 703, 721, 844
BstMBI GATC 8 cut(s) 69, 84, 508, 514, 595, 700, 718, 841
BstNI CCWGG 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 1078
BstSCI CCNGG 1 cut(s) 62
BstUI CGCG 5 cut(s) 223, 260, 309, 365, 546
BstV1I GCAGC 9 cut(s) 280, 328, 331, 334, 337, 340, 361, 441, 699
BstV2I GAAGAC 1 cut(s) 807
BsuRI GGCC 1 cut(s) 521
BtgI CCRYGG 3 cut(s) 258, 448, 544
BtgZI GCGATG 2 cut(s) 590, 711
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 3 cut(s) 349, 922, 945
BtsIMutI CAGTG 1 cut(s) 877
Cac8I GCNNGC 6 cut(s) 129, 147, 676, 729, 782, 809
CciI TCATGA 2 cut(s) 34, 511
CfoI GCGC 3 cut(s) 133, 225, 309
Cfr13I GGNCC 2 cut(s) 388, 768
Cfr42I CCGCGG 2 cut(s) 261, 547
CseI GACGC 3 cut(s) 251, 592, 679
CsiI ACCWGGT 1 cut(s) 62
Csp6I GTAC 3 cut(s) 202, 787, 1065
CspCI CAANNNNNGTGG 2 cut(s) 244, 279
CviAII CATG 5 cut(s) 35, 76, 512, 863, 1075
CviQI GTAC 3 cut(s) 202, 787, 1065
DdeI CTNAG 2 cut(s) 999, 1035
DpnI GATC 8 cut(s) 71, 86, 510, 516, 597, 702, 720, 843
DpnII GATC 8 cut(s) 69, 84, 508, 514, 595, 700, 718, 841
DrdI GACNNNNNNGTC 1 cut(s) 502
DriI GACNNNNNGTC 1 cut(s) 394
DseDI GACNNNNNNGTC 1 cut(s) 502
Eam1104I CTCTTC 5 cut(s) 170, 223, 900, 906, 929
Eam1105I GACNNNNNGTC 1 cut(s) 394
EarI CTCTTC 5 cut(s) 170, 223, 900, 906, 929
EciI GGCGGA 5 cut(s) 220, 383, 401, 450, 454
Ecl136II GAGCTC 1 cut(s) 669
Eco24I GRGCYC 2 cut(s) 671, 782
Eco47I GGWCC 2 cut(s) 388, 768
Eco53kI GAGCTC 1 cut(s) 669
Eco57I CTGAAG 2 cut(s) 821, 924
Eco72I CACGTG 2 cut(s) 46, 681
EcoICRI GAGCTC 1 cut(s) 669
EcoRII CCWGG 1 cut(s) 62
EcoT38I GRGCYC 2 cut(s) 671, 782
FaeI CATG 5 cut(s) 38, 79, 515, 866, 1078
FaiI YATR 8 cut(s) 36, 77, 513, 747, 864, 892, 1014, 1076
FatI CATG 5 cut(s) 34, 75, 511, 862, 1074
FauI CCCGC 1 cut(s) 581
FbaI TGATCA 1 cut(s) 514
FblI GTMKAC 1 cut(s) 494
FokI GGATG 3 cut(s) 336, 929, 952
FriOI GRGCYC 2 cut(s) 671, 782
FspI TGCGCA 1 cut(s) 132
GlaI GCGC 3 cut(s) 132, 224, 308
HaeIII GGCC 1 cut(s) 521
HapII CCGG 3 cut(s) 184, 353, 827
HgaI GACGC 3 cut(s) 251, 592, 679
HhaI GCGC 3 cut(s) 133, 225, 309
Hin1I GRCGYC 2 cut(s) 243, 491
Hin1II CATG 5 cut(s) 38, 79, 515, 866, 1078
Hin6I GCGC 3 cut(s) 131, 223, 307
HinP1I GCGC 3 cut(s) 131, 223, 307
HincII GTYRAC 2 cut(s) 495, 654
HindII GTYRAC 2 cut(s) 495, 654
HindIII AAGCTT 1 cut(s) 737
HinfI GANTC 7 cut(s) 31, 55, 275, 425, 524, 866, 1006
HpaI GTTAAC 1 cut(s) 654
HpaII CCGG 3 cut(s) 184, 353, 827
HphI GGTGA 2 cut(s) 451, 646
Hpy166II GTNNAC 4 cut(s) 23, 274, 495, 654
Hpy188III TCNNGA 6 cut(s) 35, 353, 512, 607, 716, 839
Hpy8I GTNNAC 4 cut(s) 23, 274, 495, 654
HpyAV CCTTC 3 cut(s) 221, 631, 889
HpyCH4III ACNGT 4 cut(s) 20, 41, 823, 1064
HpyCH4IV ACGT 4 cut(s) 45, 270, 491, 680
HpyCH4V TGCA 3 cut(s) 349, 687, 943
HpyF3I CTNAG 2 cut(s) 999, 1035
HpySE526I ACGT 4 cut(s) 45, 270, 491, 680
Hsp92I GRCGYC 2 cut(s) 243, 491
Hsp92II CATG 5 cut(s) 38, 79, 515, 866, 1078
HspAI GCGC 3 cut(s) 131, 223, 307
Kpn2I TCCGGA 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 514
KspAI GTTAAC 1 cut(s) 654
KspI CCGCGG 2 cut(s) 261, 547
Kzo9I GATC 8 cut(s) 69, 84, 508, 514, 595, 700, 718, 841
LguI GCTCTTC 1 cut(s) 223
LmnI GCTCC 5 cut(s) 355, 437, 585, 600, 628
Lsp1109I GCAGC 9 cut(s) 280, 328, 331, 334, 337, 340, 361, 441, 699
LweI GCATC 2 cut(s) 358, 930
MabI ACCWGGT 1 cut(s) 62
MaeII ACGT 4 cut(s) 45, 270, 491, 680
MaeIII GTNAC 2 cut(s) 41, 620
MalI GATC 8 cut(s) 71, 86, 510, 516, 597, 702, 720, 843
MbiI CCGCTC 2 cut(s) 149, 588
MboI GATC 8 cut(s) 69, 84, 508, 514, 595, 700, 718, 841
MhlI GDGCHC 3 cut(s) 671, 680, 782
MluCI AATT 2 cut(s) 529, 1084
MlyI GAGTC 2 cut(s) 269, 533
MmeI TCCRAC 2 cut(s) 423, 453
MroI TCCGGA 1 cut(s) 352
MseI TTAA 6 cut(s) 333, 653, 792, 1028, 1053, 1087
MslI CAYNNNNRTG 2 cut(s) 861, 1073
MspA1I CMGCKG 2 cut(s) 260, 546
MspI CCGG 3 cut(s) 184, 353, 827
MspR9I CCNGG 1 cut(s) 64
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 1 cut(s) 64
MvnI CGCG 5 cut(s) 223, 260, 309, 365, 546
NdeII GATC 8 cut(s) 69, 84, 508, 514, 595, 700, 718, 841
NlaIII CATG 5 cut(s) 38, 79, 515, 866, 1078
NlaIV GGNNCC 2 cut(s) 825, 900
NmeAIII GCCGAG 2 cut(s) 547, 650
NmuCI GTSAC 1 cut(s) 41
NsbI TGCGCA 1 cut(s) 132
NspI RCATGY 1 cut(s) 1078
NspV TTCGAA 1 cut(s) 423
PagI TCATGA 2 cut(s) 34, 511
PciSI GCTCTTC 1 cut(s) 223
PcsI WCGNNNNNNNCGW 5 cut(s) 491, 500, 662, 671, 677
PctI GAATGC 1 cut(s) 766
PfeI GAWTC 5 cut(s) 31, 55, 425, 866, 1006
PflFI GACNNNGTC 3 cut(s) 64, 490, 499
PleI GAGTC 2 cut(s) 269, 532
PmaCI CACGTG 2 cut(s) 46, 681
PmlI CACGTG 2 cut(s) 46, 681
PpsI GAGTC 2 cut(s) 269, 532
Ppu21I YACGTR 2 cut(s) 46, 681
Psp124BI GAGCTC 1 cut(s) 671
Psp6I CCWGG 1 cut(s) 62
PspCI CACGTG 2 cut(s) 46, 681
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 825, 900
PspPI GGNCC 2 cut(s) 388, 768
PsyI GACNNNGTC 3 cut(s) 64, 490, 499
RsaI GTAC 3 cut(s) 203, 788, 1066
RsaNI GTAC 3 cut(s) 202, 787, 1065
RseI CAYNNNNRTG 2 cut(s) 861, 1073
SacI GAGCTC 1 cut(s) 671
SacII CCGCGG 2 cut(s) 261, 547
SalI GTCGAC 1 cut(s) 493
SapI GCTCTTC 1 cut(s) 223
SaqAI TTAA 6 cut(s) 333, 653, 792, 1028, 1053, 1087
Sau3AI GATC 8 cut(s) 69, 84, 508, 514, 595, 700, 718, 841
Sau96I GGNCC 2 cut(s) 388, 768
ScaI AGTACT 1 cut(s) 203
SchI GAGTC 2 cut(s) 269, 533
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 3 cut(s) 671, 680, 782
SexAI ACCWGGT 1 cut(s) 62
SfaNI GCATC 2 cut(s) 358, 930
Sfr303I CCGCGG 2 cut(s) 261, 547
SfuI TTCGAA 1 cut(s) 423
SgrBI CCGCGG 2 cut(s) 261, 547
SinI GGWCC 2 cut(s) 388, 768
SmiMI CAYNNNNRTG 2 cut(s) 861, 1073
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 2 cut(s) 529, 1084
SspI AATATT 1 cut(s) 880
SstI GAGCTC 1 cut(s) 671
StyD4I CCNGG 1 cut(s) 62
TaaI ACNGT 4 cut(s) 20, 41, 823, 1064
TaiI ACGT 4 cut(s) 48, 273, 494, 683
TaqI TCGA 6 cut(s) 68, 167, 278, 423, 494, 648
TasI AATT 2 cut(s) 529, 1084
TatI WGTACW 2 cut(s) 201, 786
TfiI GAWTC 5 cut(s) 31, 55, 425, 866, 1006
Tru1I TTAA 6 cut(s) 333, 653, 792, 1028, 1053, 1087
Tru9I TTAA 6 cut(s) 333, 653, 792, 1028, 1053, 1087
TscAI CASTG 1 cut(s) 877
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 9 cut(s) 293, 316, 319, 322, 325, 328, 374, 454, 687
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 95, 1029
TspGWI ACGGA 3 cut(s) 175, 302, 333
TspRI CASTG 1 cut(s) 877
Tth111I GACNNNGTC 3 cut(s) 64, 490, 499
VpaK11BI GGWCC 2 cut(s) 388, 768
XceI RCATGY 1 cut(s) 1078
XmiI GTMKAC 1 cut(s) 494
ZraI GACGTC 1 cut(s) 492
ZrmI AGTACT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.