Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003848

Physical Location & Seq

Genomic Coordinates Forward (+)

5202466 .. 5204883

Gene Structure 2418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15940.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAGAGAGGTAAAGGAGGTTTTGTGTTTTGTCTGTTCATCTGAATTCTGGAGGATGGTTCTGTTTTGGAATATTGCTCTTGTTTCTTCTTACTTTCAATTGCTTAAAGCAAGGATCTTTGGCTCCAAATCTACTTCCATATCTGGCTCCATCAATCCACAAAATGGATCTTCTAGACCCATTTGTGTTATCACTGGTGCTACTTCTGGGCTTGGTAAGGCCACTGCATTTGCTCTTGCAGAGAAAGGTTTCTACGTCGTTCTTGTTGGACGGTCCTCTCAGCTTCTTTCAGAGACCCTGAAGGAAATTAAGAACAAGAACAAAGATGCTCAACTCAAGTCTTTCGAAGCTGACATGTCTTCATTTGAATCAATCTTCACGTTTAAAAACTCTCTAGAGCAATGGCTCTCGGACTCAGCGTTACATCCTTCTATTCAGGTTTTGGTGAACAATGCTGGGATCTTGGCAACTTCTAGTCGACCAACCATTGATGGTTATGACAGGATGATTGCTACAAACTATGTTGGTCCATTCTTTTTGACCAAACTTCTTCTACCACTTCTGAAAAACAGCAATGTTCCTTCACGGGTCGTTAACGTTACATCTTTCACACATCATTCAGCTTTTATTCAAAAGCTAGACAAGGATTCTGTTACTGGAGTGTGTTTTTCGACATCAAACCAATATCCATGCGCTCGAATCTACGAGTATTCTAAATTATGTCTTCTACTGTTCTCATATGAATTGCACCGACAACTTCGGCTCATAGACGACTCAAGCCATGTCTCTGTAATAGCTGCTGATCCAGGATTTGTGAAAACGAATATAATGCGTGAGCTTCCTTGTTACATAACTTCCATGGTGTTTCTTGGCTTCAAAATTCTTGGCCTCCTGCAATCCCCAGAGGATGGAGCTGAATCTATCATCGATGCCGCTTTATCCACACCCGAAACATCAGGTGCTTACTATTTTGGAGGAAAAGGAAGGACCATTGAATCATCACAAGTTTCTAGAGACCCTAAACTTGCTAAACAACTCTGGGAAACATCTTGTGATTTGTTCAATGACTTGCAGCTTCTTCATCACCACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

364

Amino Acids

40.43

Weight (kDa)

8.33

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	63 - 207	1.3e-23	short chain dehydrogenase
adh_short_C2	PF13561	67 - 209	5.4e-13	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04070 AT5G15940 AT5G15940 AT5G15940 AT5G15940
fragaria_vesca	FvH4_6g28040 FvH4_6g28040
malus_domestica	MD15G1141600.v1.1
prunus_persica	Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1
pyrus_communis	pycom15g12790
rosa_chinensis	RchiOBHm_Chr2g0131741 RchiOBHm_Chr5g0041951 RchiOBHm_Chr6g0247031
rosa_laevigata	RLG00000015229 RLG00000019207
rosa_multiflora	Rmu_sc0006001.1_g000002 Rmu_sc0009880.1_g000012
rosa_roxburghii	Rroxscaffold_1G00038630 Rroxscaffold_2G00112660
rosa_rugosa	Rorug05G0197200 Rorug07G0258400
rosa_samantha	Rh2AG351900 Rh2BG359000 Rh5AG282000 Rh5BG287700 Rh5DG296500 Rh6BG031500
rosa_wichuraiana	Rw0G001410 Rw2G028590 Rw2G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	164, 908
AccI	GTMKAC	1 cut(s)	478
AciI	CCGC	1 cut(s)	933
AclI	AACGTT	1 cut(s)	597
AclWI	GGATC	4 cut(s)	122, 175, 467, 797
AcsI	RAATTY	2 cut(s)	44, 879
AcuI	CTGAAG	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	164, 908
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	6 cut(s)	98, 368, 632, 877, 995, 1063
AjnI	CCWGG	1 cut(s)	805
AluBI	AGCT	8 cut(s)	283, 350, 623, 637, 797, 838, 914, 1075
AluI	AGCT	8 cut(s)	283, 350, 623, 637, 797, 838, 914, 1075
Alw26I	GTCTC	3 cut(s)	287, 790, 1008
AlwI	GGATC	4 cut(s)	122, 175, 467, 797
AoxI	GGCC	2 cut(s)	219, 886
ApeKI	GCWGC	2 cut(s)	797, 1072
ApoI	RAATTY	2 cut(s)	44, 879
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	695
AspS9I	GGNCC	3 cut(s)	273, 527, 987
AsuHPI	GGTGA	2 cut(s)	457, 1076
AsuII	TTCGAA	1 cut(s)	345
AvaII	GGWCC	3 cut(s)	273, 527, 987
BbsI	GAAGAC	2 cut(s)	351, 716
BbvI	GCAGC	2 cut(s)	784, 1084
BccI	CCATC	4 cut(s)	49, 158, 485, 902
BcgI	CGANNNNNNTGC	2 cut(s)	811, 845
BciT130I	CCWGG	1 cut(s)	807
BcoDI	GTCTC	3 cut(s)	287, 790, 1008
BfaI	CTAG	5 cut(s)	174, 395, 474, 638, 1011
BisI	GCNGC	3 cut(s)	798, 933, 1073
BlsI	GCNGC	3 cut(s)	799, 934, 1074
Bme1390I	CCNGG	1 cut(s)	807
Bme18I	GGWCC	3 cut(s)	273, 527, 987
BmgT120I	GGNCC	3 cut(s)	273, 527, 987
BmiI	GGNNCC	2 cut(s)	124, 148
BmrFI	CCNGG	1 cut(s)	807
BmsI	GCATC	2 cut(s)	316, 919
BpiI	GAAGAC	2 cut(s)	351, 716
BpmI	CTGGAG	2 cut(s)	70, 678
Bpu14I	TTCGAA	1 cut(s)	345
BpuEI	CTTGAG	2 cut(s)	320, 760
Bsa29I	ATCGAT	1 cut(s)	927
BsaI	GGTCTC	2 cut(s)	287, 1008
BsaJI	CCNNGG	1 cut(s)	858
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 908
Bse1I	ACTGG	2 cut(s)	199, 661
Bse3DI	GCAATG	2 cut(s)	407, 580
BseBI	CCWGG	1 cut(s)	807
BseCI	ATCGAT	1 cut(s)	927
BseDI	CCNNGG	1 cut(s)	858
BseGI	GGATG	4 cut(s)	60, 424, 510, 913
BseLI	CCNNNNNNNGG	2 cut(s)	164, 908
BseMI	GCAATG	2 cut(s)	407, 580
BseMII	CTCAG	2 cut(s)	293, 429
BseNI	ACTGG	2 cut(s)	199, 661
BseXI	GCAGC	2 cut(s)	784, 1084
BseYI	CCCAGC	1 cut(s)	455
BshFI	GGCC	2 cut(s)	221, 888
BshVI	ATCGAT	1 cut(s)	927
BslI	CCNNNNNNNGG	2 cut(s)	164, 908
BsmAI	GTCTC	3 cut(s)	287, 790, 1008
BsnI	GGCC	2 cut(s)	221, 888
Bso31I	GGTCTC	2 cut(s)	287, 1008
Bsp119I	TTCGAA	1 cut(s)	345
Bsp143I	GATC	4 cut(s)	114, 167, 459, 802
Bsp19I	CCATGG	1 cut(s)	858
BspACI	CCGC	1 cut(s)	933
BspANI	GGCC	2 cut(s)	221, 888
BspCNI	CTCAG	2 cut(s)	292, 428
BspDI	ATCGAT	1 cut(s)	927
BspLI	GGNNCC	2 cut(s)	124, 148
BspPI	GGATC	4 cut(s)	122, 175, 467, 797
BspT104I	TTCGAA	1 cut(s)	345
BspTNI	GGTCTC	2 cut(s)	287, 1008
BsrDI	GCAATG	2 cut(s)	407, 580
BsrI	ACTGG	2 cut(s)	199, 661
BssECI	CCNNGG	1 cut(s)	858
BssMI	GATC	4 cut(s)	114, 167, 459, 802
BssT1I	CCWWGG	1 cut(s)	858
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	2 cut(s)	273, 732
BstBI	TTCGAA	1 cut(s)	345
BstDEI	CTNAG	2 cut(s)	279, 415
BstDSI	CCRYGG	1 cut(s)	858
BstF5I	GGATG	4 cut(s)	60, 424, 510, 913
BstHHI	GCGC	1 cut(s)	695
BstKTI	GATC	4 cut(s)	117, 170, 462, 805
BstMAI	GTCTC	3 cut(s)	287, 790, 1008
BstMBI	GATC	4 cut(s)	114, 167, 459, 802
BstNI	CCWGG	1 cut(s)	807
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	805
BstV1I	GCAGC	2 cut(s)	784, 1084
BstV2I	GAAGAC	2 cut(s)	351, 716
BstX2I	RGATCY	3 cut(s)	114, 167, 459
BstYI	RGATCY	3 cut(s)	114, 167, 459
Bsu15I	ATCGAT	1 cut(s)	927
BsuRI	GGCC	2 cut(s)	221, 888
BsuTUI	ATCGAT	1 cut(s)	927
BtgI	CCRYGG	1 cut(s)	858
BtsCI	GGATG	4 cut(s)	60, 424, 510, 913
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	192, 222
CfoI	GCGC	1 cut(s)	695
Cfr13I	GGNCC	3 cut(s)	273, 527, 987
ClaI	ATCGAT	1 cut(s)	927
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	4 cut(s)	355, 690, 782, 859
DdeI	CTNAG	2 cut(s)	279, 415
DpnI	GATC	4 cut(s)	116, 169, 461, 804
DpnII	GATC	4 cut(s)	114, 167, 459, 802
DraI	TTTAAA	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	858
Eco31I	GGTCTC	2 cut(s)	287, 1008
Eco47I	GGWCC	3 cut(s)	273, 527, 987
Eco57I	CTGAAG	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	805
EcoT14I	CCWWGG	1 cut(s)	858
ErhI	CCWWGG	1 cut(s)	858
FaeI	CATG	4 cut(s)	358, 693, 785, 862
FatI	CATG	4 cut(s)	354, 689, 781, 858
FauNDI	CATATG	1 cut(s)	739
FblI	GTMKAC	1 cut(s)	478
Fnu4HI	GCNGC	3 cut(s)	798, 933, 1073
FokI	GGATG	4 cut(s)	67, 411, 517, 920
Fsp4HI	GCNGC	3 cut(s)	798, 933, 1073
FspBI	CTAG	5 cut(s)	174, 395, 474, 638, 1011
GlaI	GCGC	1 cut(s)	694
GluI	GCNGC	3 cut(s)	798, 933, 1073
GsaI	CCCAGC	1 cut(s)	459
GsuI	CTGGAG	2 cut(s)	70, 678
HaeIII	GGCC	2 cut(s)	221, 888
HhaI	GCGC	1 cut(s)	695
Hin1II	CATG	4 cut(s)	358, 693, 785, 862
Hin6I	GCGC	1 cut(s)	693
HinP1I	GCGC	1 cut(s)	693
HincII	GTYRAC	2 cut(s)	479, 595
HindII	GTYRAC	2 cut(s)	479, 595
HinfI	GANTC	7 cut(s)	368, 413, 647, 699, 773, 917, 995
HpaI	GTTAAC	1 cut(s)	595
HphI	GGTGA	2 cut(s)	457, 1076
Hpy166II	GTNNAC	3 cut(s)	448, 479, 595
Hpy188I	TCNGA	4 cut(s)	43, 292, 412, 564
Hpy188III	TCNNGA	4 cut(s)	49, 174, 395, 1011
Hpy8I	GTNNAC	3 cut(s)	448, 479, 595
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	4 cut(s)	295, 438, 591, 978
HpyCH4III	ACNGT	2 cut(s)	273, 732
HpyCH4IV	ACGT	3 cut(s)	255, 380, 597
HpyCH4V	TGCA	5 cut(s)	227, 239, 748, 895, 1072
HpyF3I	CTNAG	2 cut(s)	279, 415
HpySE526I	ACGT	3 cut(s)	255, 380, 597
Hsp92II	CATG	4 cut(s)	358, 693, 785, 862
HspAI	GCGC	1 cut(s)	693
KspAI	GTTAAC	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	114, 167, 459, 802
LmnI	GCTCC	3 cut(s)	128, 152, 911
Lsp1109I	GCAGC	2 cut(s)	784, 1084
LweI	GCATC	2 cut(s)	316, 919
MaeI	CTAG	5 cut(s)	174, 395, 474, 638, 1011
MaeII	ACGT	3 cut(s)	255, 380, 597
MaeIII	GTNAC	4 cut(s)	420, 598, 652, 845
MalI	GATC	4 cut(s)	116, 169, 461, 804
MboI	GATC	4 cut(s)	114, 167, 459, 802
MboII	GAAGA	7 cut(s)	78, 162, 351, 367, 542, 716, 1070
MfeI	CAATTG	1 cut(s)	98
MflI	RGATCY	3 cut(s)	114, 167, 459
MluCI	AATT	6 cut(s)	44, 98, 306, 716, 743, 879
MlyI	GAGTC	2 cut(s)	407, 767
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	6 cut(s)	10, 45, 286, 898, 899, 968
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	4 cut(s)	105, 309, 384, 594
MspR9I	CCNGG	1 cut(s)	807
MunI	CAATTG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	807
NcoI	CCATGG	1 cut(s)	858
NdeI	CATATG	1 cut(s)	739
NdeII	GATC	4 cut(s)	114, 167, 459, 802
NlaIII	CATG	4 cut(s)	358, 693, 785, 862
NlaIV	GGNNCC	2 cut(s)	124, 148
NspI	RCATGY	1 cut(s)	358
NspV	TTCGAA	1 cut(s)	345
PciI	ACATGT	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	5 cut(s)	368, 647, 699, 917, 995
PflMI	CCANNNNNTGG	2 cut(s)	164, 908
PfoI	TCCNGGA	1 cut(s)	805
PkrI	GCNGC	3 cut(s)	799, 934, 1074
PleI	GAGTC	2 cut(s)	407, 767
PpsI	GAGTC	2 cut(s)	407, 767
PscI	ACATGT	1 cut(s)	354
Psp1406I	AACGTT	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	805
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	805
PspN4I	GGNNCC	2 cut(s)	124, 148
PspPI	GGNCC	3 cut(s)	273, 527, 987
PsuI	RGATCY	3 cut(s)	114, 167, 459
SalI	GTCGAC	1 cut(s)	477
SaqAI	TTAA	4 cut(s)	105, 309, 384, 594
SatI	GCNGC	3 cut(s)	798, 933, 1073
Sau3AI	GATC	4 cut(s)	114, 167, 459, 802
Sau96I	GGNCC	3 cut(s)	273, 527, 987
SchI	GAGTC	2 cut(s)	407, 767
ScrFI	CCNGG	1 cut(s)	807
SfaNI	GCATC	2 cut(s)	316, 919
SfuI	TTCGAA	1 cut(s)	345
SinI	GGWCC	3 cut(s)	273, 527, 987
SmlI	CTYRAG	2 cut(s)	335, 775
SmoI	CTYRAG	2 cut(s)	335, 775
Sse9I	AATT	6 cut(s)	44, 98, 306, 716, 743, 879
SsiI	CCGC	1 cut(s)	933
SspI	AATATT	1 cut(s)	73
SspMI	CTAG	5 cut(s)	174, 395, 474, 638, 1011
StyD4I	CCNGG	1 cut(s)	805
StyI	CCWWGG	1 cut(s)	858
TaaI	ACNGT	2 cut(s)	273, 732
TaiI	ACGT	3 cut(s)	258, 383, 600
TaqI	TCGA	5 cut(s)	345, 478, 671, 697, 927
TasI	AATT	6 cut(s)	44, 98, 306, 716, 743, 879
TauI	GCSGC	1 cut(s)	935
TfiI	GAWTC	5 cut(s)	368, 647, 699, 917, 995
Tru1I	TTAA	4 cut(s)	105, 309, 384, 594
Tru9I	TTAA	4 cut(s)	105, 309, 384, 594
TscAI	CASTG	2 cut(s)	199, 229
TseI	GCWGC	2 cut(s)	797, 1072
TspDTI	ATGAA	4 cut(s)	27, 351, 756, 1070
TspRI	CASTG	2 cut(s)	199, 229
Van91I	CCANNNNNTGG	2 cut(s)	164, 908
VpaK11BI	GGWCC	3 cut(s)	273, 527, 987
XapI	RAATTY	2 cut(s)	44, 879
XbaI	TCTAGA	3 cut(s)	173, 394, 1010
XceI	RCATGY	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	478
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	5 cut(s)	174, 395, 474, 638, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.