Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003848

Physical Location & Seq

Genomic Coordinates Reverse (-)

45833131 .. 45835124

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAAGGAGGCATTGAATTTTGTAGTGTCCATGGAATTCTGGAGAATGGGCCTGCGATGGACTCTCAGTCTTCTCATCTCTTACTGGCACCTCCTCTTCGCCTCGACTACTACTCCTCCTTCCAGATCACCGCCTCCCTCATCTCCGTCGAGGCCCGTCTGCATCATCACCGGTGCGACTTCTGGATTGGGCGCCGCCGCGGCTCATGCTCTCTCCGCTAGTGGCTTCTTTGTGGTTCTCGTTGGACGCTCATCTCGCTTGTTAGAACAGACGATGATGAAAATTAAGAGGAAGAATGAGAGTGCACAGCTGAAAGCTTTCGAGGTTGATCTCTCATCATTCCAGTCGATTCTTTGGTTTAAAGCCTCCCTACAGCAGTGGCTTTCTTACTCGCAAATGCACTCTTCGATCCAACTCCTAATTAACAACGCTGGAATACTTGCTACGTCGTCTAGATTCACGTCTGAAGGCTATGATCAGATGATGGCTACAAATTACTTGAGTGCATTTTTTCTTAGTAAACTATTGTTACCGCTTCTCAGAAACAGCTCGATTCCTTCCCGTATAGTGAATGTCACATCTTTCACACATCGAAGTGTATCAAATATACAGGTTGACAAGGAGACTGTATCTGGGAAGTGCTTCAGCAGATTAAAAAGATACCCATATGCTCTTGTATATGAGTATTCCAAATTGTTCCTACTGCTCTTCTCCTATGAGCTTCATCGCCAACTTGGCTTGATGGACATATCTCGTCACGTCTCCGTCATTGCTGTGGATCCTGGTGTTGTTGAAACCAACATCTTGCGAGAAGTTCCTCCATGCCTATCCAGTTTGGCTGGTAAAGTTTTGAGAAGTCTTTGGCTCTTGCAGTCACCTGAAGTTGGAATCAGTTCCATTCTCCATGCAGCATTTGCTCCACCAGAAACATCTGGAGTTTACTTTTTTGGTGGAAAGGGCAACACTGTCAGCTCTTCTATGCTTTCATATGATGCCAAACTTGTACAGGAACTTTGGAGTACATCGTCTGAGCTATTTTTAGAGTCACAGCTTGCTTTCAAGGAAACCTCCACTTCTGTATCAAACTTTGTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

365

Amino Acids

40.51

Weight (kDa)

9.45

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	53 - 196	2.5e-22	short chain dehydrogenase
adh_short_C2	PF13561	58 - 200	2e-12	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04070 AT5G15940 AT5G15940 AT5G15940 AT5G15940
fragaria_vesca	FvH4_6g28040 FvH4_6g28040
malus_domestica	MD15G1141600.v1.1
prunus_persica	Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1
pyrus_communis	pycom15g12790
rosa_chinensis	RchiOBHm_Chr2g0131741 RchiOBHm_Chr5g0041951 RchiOBHm_Chr6g0247031
rosa_laevigata	RLG00000015229 RLG00000019207
rosa_multiflora	Rmu_sc0006001.1_g000002 Rmu_sc0009880.1_g000012
rosa_roxburghii	Rroxscaffold_1G00038630 Rroxscaffold_2G00112660
rosa_rugosa	Rorug05G0197200 Rorug07G0258400
rosa_samantha	Rh2AG351900 Rh2BG359000 Rh5AG282000 Rh5BG287700 Rh5DG296500 Rh6BG031500
rosa_wichuraiana	Rw0G001410 Rw2G028590 Rw2G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	87, 191
AccII	CGCG	1 cut(s)	200
AciI	CCGC	6 cut(s)	131, 195, 198, 200, 216, 533
AclWI	GGATC	3 cut(s)	403, 773, 786
AcsI	RAATTY	2 cut(s)	16, 35
AcuI	CTGAAG	3 cut(s)	486, 628, 900
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	1005, 1021
AfiI	CCNNNNNNNGG	1 cut(s)	884
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	3 cut(s)	16, 794, 1060
AhdI	GACNNNNNGTC	1 cut(s)	66
AjiI	CACGTC	2 cut(s)	462, 760
AjnI	CCWGG	1 cut(s)	781
AluBI	AGCT	7 cut(s)	310, 317, 549, 721, 972, 1033, 1051
AluI	AGCT	7 cut(s)	310, 317, 549, 721, 972, 1033, 1051
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	2 cut(s)	617, 766
Alw44I	GTGCAC	1 cut(s)	303
AlwI	GGATC	3 cut(s)	403, 773, 786
AoxI	GGCC	2 cut(s)	49, 152
ApaLI	GTGCAC	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	908
ApoI	RAATTY	2 cut(s)	16, 35
AsiGI	ACCGGT	1 cut(s)	170
Asp700I	GAANNNNTTC	3 cut(s)	317, 641, 892
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	49, 153
AsuHPI	GGTGA	3 cut(s)	120, 160, 867
BaeGI	GKGCMC	1 cut(s)	307
BaeI	ACNNNNGTAYC	2 cut(s)	1062, 1095
BamHI	GGATCC	1 cut(s)	778
BanI	GGYRCC	2 cut(s)	87, 191
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	920
BccI	CCATC	3 cut(s)	51, 478, 736
BciT130I	CCWGG	1 cut(s)	783
BclI	TGATCA	1 cut(s)	475
BcoDI	GTCTC	2 cut(s)	617, 766
BfaI	CTAG	2 cut(s)	219, 453
BfmI	CTRYAG	1 cut(s)	371
BfoI	RGCGCY	1 cut(s)	195
BglI	GCCNNNNNGGC	2 cut(s)	200, 735
BisI	GCNGC	4 cut(s)	195, 198, 201, 909
BlsI	GCNGC	4 cut(s)	196, 199, 202, 910
Bme1390I	CCNGG	1 cut(s)	783
BmeRI	GACNNNNNGTC	1 cut(s)	66
BmgBI	CACGTC	2 cut(s)	462, 760
BmgT120I	GGNCC	2 cut(s)	49, 153
BmiI	GGNNCC	3 cut(s)	89, 193, 780
BmrFI	CCNGG	1 cut(s)	783
BmsI	GCATC	2 cut(s)	171, 982
BpiI	GAAGAC	1 cut(s)	62
BpmI	CTGGAG	2 cut(s)	61, 954
BpuEI	CTTGAG	1 cut(s)	520
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	30, 198
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 100, 127, 130
Bsc4I	CCNNNNNNNGG	1 cut(s)	884
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	3 cut(s)	89, 343, 831
Bse3DI	GCAATG	1 cut(s)	768
BseBI	CCWGG	1 cut(s)	783
BseDI	CCNNGG	2 cut(s)	30, 198
BseLI	CCNNNNNNNGG	1 cut(s)	884
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	3 cut(s)	79, 553, 1020
BseNI	ACTGG	3 cut(s)	89, 343, 831
BseRI	GAGGAG	2 cut(s)	83, 105
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	920
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	2 cut(s)	51, 154
BshNI	GGYRCC	2 cut(s)	87, 191
BshTI	ACCGGT	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	884
BsmAI	GTCTC	2 cut(s)	617, 766
BsmBI	CGTCTC	1 cut(s)	766
BsnI	GGCC	2 cut(s)	51, 154
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp1407I	TGTACA	1 cut(s)	1003
Bsp143I	GATC	5 cut(s)	125, 328, 408, 475, 778
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	6 cut(s)	131, 195, 198, 200, 216, 533
BspANI	GGCC	2 cut(s)	51, 154
BspCNI	CTCAG	3 cut(s)	78, 552, 1021
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	3 cut(s)	89, 193, 780
BspPI	GGATC	3 cut(s)	403, 773, 786
BspQI	GCTCTTC	2 cut(s)	713, 979
BspT107I	GGYRCC	2 cut(s)	87, 191
BsrDI	GCAATG	1 cut(s)	768
BsrFI	RCCGGY	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	1003
BsrI	ACTGG	3 cut(s)	89, 343, 831
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	30, 198
BssMI	GATC	5 cut(s)	125, 328, 408, 475, 778
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	783
Bst4CI	ACNGT	2 cut(s)	628, 967
Bst6I	CTCTTC	4 cut(s)	101, 409, 713, 979
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstAUI	TGTACA	1 cut(s)	1003
BstC8I	GCNNGC	2 cut(s)	53, 1053
BstDEI	CTNAG	4 cut(s)	65, 515, 539, 1029
BstDSI	CCRYGG	2 cut(s)	30, 198
BstFNI	CGCG	1 cut(s)	200
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	5 cut(s)	128, 331, 411, 478, 781
BstMAI	GTCTC	2 cut(s)	617, 766
BstMBI	GATC	5 cut(s)	125, 328, 408, 475, 778
BstMWI	GCNNNNNNNGC	6 cut(s)	200, 206, 215, 255, 735, 914
BstNI	CCWGG	1 cut(s)	783
BstSCI	CCNGG	1 cut(s)	781
BstSFI	CTRYAG	1 cut(s)	371
BstSLI	GKGCMC	1 cut(s)	307
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	920
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	778
BstYI	RGATCY	1 cut(s)	778
BsuRI	GGCC	2 cut(s)	51, 154
BtgI	CCRYGG	2 cut(s)	30, 198
BtgZI	GCGATG	2 cut(s)	70, 710
BtrI	CACGTC	2 cut(s)	462, 760
BtsI	GCAGTG	1 cut(s)	383
BtsIMutI	CAGTG	2 cut(s)	383, 963
Cac8I	GCNNGC	2 cut(s)	53, 1053
CfoI	GCGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	49, 153
Cfr42I	CCGCGG	1 cut(s)	201
CseI	GACGC	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	1004, 1020
CspAI	ACCGGT	1 cut(s)	170
CviAII	CATG	4 cut(s)	31, 206, 822, 905
CviQI	GTAC	2 cut(s)	1004, 1020
DdeI	CTNAG	4 cut(s)	65, 515, 539, 1029
DinI	GGCGCC	1 cut(s)	193
DpnI	GATC	5 cut(s)	127, 330, 410, 477, 780
DpnII	GATC	5 cut(s)	125, 328, 408, 475, 778
DraI	TTTAAA	1 cut(s)	361
DriI	GACNNNNNGTC	1 cut(s)	66
Eam1104I	CTCTTC	4 cut(s)	101, 409, 713, 979
Eam1105I	GACNNNNNGTC	1 cut(s)	66
EarI	CTCTTC	4 cut(s)	101, 409, 713, 979
Eco130I	CCWWGG	1 cut(s)	30
Eco57I	CTGAAG	3 cut(s)	486, 628, 900
EcoRI	GAATTC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	781
EcoT14I	CCWWGG	1 cut(s)	30
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	30
Esp3I	CGTCTC	1 cut(s)	766
FaeI	CATG	4 cut(s)	34, 209, 825, 908
FatI	CATG	4 cut(s)	30, 205, 821, 904
FauNDI	CATATG	2 cut(s)	667, 988
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	4 cut(s)	195, 198, 201, 909
Fsp4HI	GCNGC	4 cut(s)	195, 198, 201, 909
FspBI	CTAG	2 cut(s)	219, 453
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	4 cut(s)	195, 198, 201, 909
GsuI	CTGGAG	2 cut(s)	61, 954
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	51, 154
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	1 cut(s)	255
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	34, 209, 825, 908
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	6 cut(s)	61, 349, 456, 553, 888, 1043
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	3 cut(s)	120, 160, 867
Hpy166II	GTNNAC	4 cut(s)	305, 521, 616, 940
Hpy188I	TCNGA	4 cut(s)	466, 480, 542, 1030
Hpy188III	TCNNGA	5 cut(s)	40, 123, 183, 453, 933
Hpy8I	GTNNAC	4 cut(s)	305, 521, 616, 940
Hpy99I	CGWCG	2 cut(s)	151, 451
HpyAV	CCTTC	3 cut(s)	129, 461, 567
HpyCH4III	ACNGT	2 cut(s)	628, 967
HpyCH4IV	ACGT	3 cut(s)	446, 461, 759
HpyCH4V	TGCA	6 cut(s)	162, 305, 400, 506, 871, 908
HpyF10VI	GCNNNNNNNGC	6 cut(s)	200, 206, 215, 255, 735, 914
HpyF3I	CTNAG	4 cut(s)	65, 515, 539, 1029
HpySE526I	ACGT	3 cut(s)	446, 461, 759
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	34, 209, 825, 908
HspAI	GCGC	1 cut(s)	192
KasI	GGCGCC	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	475
KspI	CCGCGG	1 cut(s)	201
Kzo9I	GATC	5 cut(s)	125, 328, 408, 475, 778
LguI	GCTCTTC	2 cut(s)	713, 979
LmnI	GCTCC	1 cut(s)	922
Lsp1109I	GCAGC	1 cut(s)	920
LweI	GCATC	2 cut(s)	171, 982
MaeI	CTAG	2 cut(s)	219, 453
MaeII	ACGT	3 cut(s)	446, 461, 759
MaeIII	GTNAC	5 cut(s)	528, 574, 755, 873, 1044
MalI	GATC	5 cut(s)	127, 330, 410, 477, 780
MboI	GATC	5 cut(s)	125, 328, 408, 475, 778
MboII	GAAGA	6 cut(s)	62, 88, 304, 396, 700, 966
MflI	RGATCY	1 cut(s)	778
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	6 cut(s)	16, 35, 282, 420, 493, 692
Mly113I	GGCGCC	1 cut(s)	192
MlyI	GAGTC	2 cut(s)	55, 1052
MmeI	TCCRAC	3 cut(s)	223, 436, 865
MroXI	GAANNNNTTC	3 cut(s)	317, 641, 892
MseI	TTAA	4 cut(s)	285, 360, 423, 653
MslI	CAYNNNNRTG	2 cut(s)	594, 773
MspA1I	CMGCKG	2 cut(s)	200, 310
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	783
MvaI	CCWGG	1 cut(s)	783
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	6 cut(s)	200, 206, 215, 255, 735, 914
NarI	GGCGCC	1 cut(s)	192
NcoI	CCATGG	1 cut(s)	30
NdeI	CATATG	2 cut(s)	667, 988
NdeII	GATC	5 cut(s)	125, 328, 408, 475, 778
NlaIII	CATG	4 cut(s)	34, 209, 825, 908
NlaIV	GGNNCC	3 cut(s)	89, 193, 780
NmuCI	GTSAC	4 cut(s)	574, 755, 873, 1044
PciSI	GCTCTTC	2 cut(s)	713, 979
PdmI	GAANNNNTTC	3 cut(s)	317, 641, 892
PfeI	GAWTC	4 cut(s)	349, 456, 553, 888
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	4 cut(s)	196, 199, 202, 910
PleI	GAGTC	2 cut(s)	55, 1051
PluTI	GGCGCC	1 cut(s)	195
PpsI	GAGTC	2 cut(s)	55, 1051
Psp6I	CCWGG	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	781
PspN4I	GGNNCC	3 cut(s)	89, 193, 780
PspPI	GGNCC	2 cut(s)	49, 153
PsuI	RGATCY	1 cut(s)	778
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	2 cut(s)	1005, 1021
RsaNI	GTAC	2 cut(s)	1004, 1020
RseI	CAYNNNNRTG	2 cut(s)	594, 773
SacII	CCGCGG	1 cut(s)	201
SapI	GCTCTTC	2 cut(s)	713, 979
SaqAI	TTAA	4 cut(s)	285, 360, 423, 653
SatI	GCNGC	4 cut(s)	195, 198, 201, 909
Sau3AI	GATC	5 cut(s)	125, 328, 408, 475, 778
Sau96I	GGNCC	2 cut(s)	49, 153
SchI	GAGTC	2 cut(s)	55, 1052
ScrFI	CCNGG	1 cut(s)	783
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	2 cut(s)	171, 982
SfcI	CTRYAG	1 cut(s)	371
SfoI	GGCGCC	1 cut(s)	193
Sfr303I	CCGCGG	1 cut(s)	201
SgrAI	CRCCGGYG	1 cut(s)	170
SgrBI	CCGCGG	1 cut(s)	201
SmiMI	CAYNNNNRTG	2 cut(s)	594, 773
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	6 cut(s)	16, 35, 282, 420, 493, 692
SsiI	CCGC	6 cut(s)	131, 195, 198, 200, 216, 533
SspDI	GGCGCC	1 cut(s)	191
SspMI	CTAG	2 cut(s)	219, 453
StyD4I	CCNGG	1 cut(s)	781
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	2 cut(s)	628, 967
TaiI	ACGT	3 cut(s)	449, 464, 762
TaqI	TCGA	7 cut(s)	104, 149, 321, 347, 407, 551, 592
TasI	AATT	6 cut(s)	16, 35, 282, 420, 493, 692
TatI	WGTACW	2 cut(s)	1003, 1019
TauI	GCSGC	3 cut(s)	197, 200, 203
TfiI	GAWTC	4 cut(s)	349, 456, 553, 888
Tru1I	TTAA	4 cut(s)	285, 360, 423, 653
Tru9I	TTAA	4 cut(s)	285, 360, 423, 653
TscAI	CASTG	2 cut(s)	383, 970
TseFI	GTSAC	4 cut(s)	574, 755, 873, 1044
TseI	GCWGC	1 cut(s)	908
Tsp45I	GTSAC	4 cut(s)	574, 755, 873, 1044
TspDTI	ATGAA	4 cut(s)	17, 293, 713, 975
TspGWI	ACGGA	2 cut(s)	135, 754
TspRI	CASTG	2 cut(s)	383, 970
VneI	GTGCAC	1 cut(s)	303
XapI	RAATTY	2 cut(s)	16, 35
XbaI	TCTAGA	1 cut(s)	452
XmnI	GAANNNNTTC	3 cut(s)	317, 641, 892
XspI	CTAG	2 cut(s)	219, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.