Rorug05G0197200

Dehydrogenase reductase SDR family member on chromosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003848
Physical Location & Seq
Reverse (-)
19525977 .. 19528155
2179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0197200.1

Sequence Viewer

Length: 1602 bp
ATGCAACAAAAAAGGCCTTTATCAGTCCTTACTGACGGGGACGAAGCTATGAAGAATGCTATGGAGCGGGTGATGCCCCAAACCCGTCACAGACTATGTGCCTGGCACATCGGCAGAAACATTGGCCAGAACCTTAACTCGGAAGAAGTTAAGAAAGCTATTGGGCAATTGATGTTTGCATCTCTGACCGTAGCGGAGTGGGAGTCCGAGTGGCAATCTGTTATTTTTAAGTTTGGCCTTCAAAATAATGCATGGGTGGCTTCTTTGTATAAAAAGCGGGAACGATGGGCGGAGGCATATTTTCGAGGCCATTTTTTTGGGGGTATGTGCAGCACACAGAGATGCGAGGGTATGAATTGTCAGTTTAAAAAACAGATCTCCAGATACACAAAGTTGTCGGATGTTATGCCACGATTGGAGTGGAAACTAAATCGGTTAAGGGATCGCGTTATGCGTGACAACTTCAACGTTAAAAATACCACCCCTGTGTTTGATACTCACATGAGGGGGTTAGAGGAAGAGGCGTGCAAAATTTTCACGCATGACATATTTATCATGATTAAGTCCCAAATAAGGTTTGAAGGGAGGTTTGTCGTTCATAAAAGGTTCAAGTTTCCTAATGTTGATGCAATTGTTTTTTATGTGGGCCAGTATGACAGAGTAGAACGTCGTTGGTGCGTTGAGTTTCGAGGGAATAATGGCAATCCGGAGTGGTTATGCTCGTGCAAGATGTTTGAATCCGACGGCATTCCTTGTGCTCATCTGTTCAGTGTTATGAAAGCGGAGTTGGTTTCAGAATTTCCAAACTGTCTGATTTTGAAGCGATGGACACGTTTAGTTGGCGAAACTACTATAGCCCCTTCGCTTTCCCATATGTCAAATGATAAGTCTGCCCAATGTGCACGGTATGCTGCCCTCCTAATTGAAGCTGCAGAAGCCTGTTTAAATTACTCCAACTCCAATGAAAGCTTCAATGCTGCAATGATCGAACTTCAAACCTTCAAATCTAAATCTCTGCAATACCATGAAGTTGGGGAAAAAAACATTCCTAACCCTACAGAGACTCCAATTGTTGTGAGGGACCCGTTGATGTCAAGAACGAAGGGAATGTCGTGCAATACAGAAGGGCGCACCGATAGTCAAATGAAGAAAAGTGTCATTACATGCGGACAATGTCATCAGATTGGTCACAACAGGCGCACATGCAAAGCACATGAAGATCGGTTCGAGATAATTGGTACGGGGGACGGACAATCTCCAGTCATTGATACTGCTGCAGCCGTTCGTCCAGAATGGGAACCATCAATTCCAGACTTTTCTCCTGCGGGGAGTGATCACATTTCAACTCCTTCCAGCCCATGTTTACCTACAAACATTGCGCAGGCTGGCGCTGTGCAACCAAAACCGTCCATATCAATTCAGGTGAATGATTGCATGTGGCCTGATATGGAGTTCCCCCTGCTCGTGAATGTTACTGTTACACTGTTCTTTGTCGTCGGAAAAGGCATGACGATCGGGGCTGAGTCTGGGGTCGTTTACATCAACATCAAAAACAAAAACCGAAACAAGAGAGCAGAAAGAAAAGAGGGATACAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

533

Amino Acids

60.78

Weight (kDa)

8.89

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 2 - 39 9.1e-09 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1380
AccBSI CCGCTC 1 cut(s) 67
AccII CGCG 1 cut(s) 447
AccIII TCCGGA 1 cut(s) 706
AciI CCGC 7 cut(s) 67, 194, 277, 290, 782, 1167, 1325
AclI AACGTT 1 cut(s) 468
AclWI GGATC 1 cut(s) 450
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 2 cut(s) 531, 797
AfaI GTAC 1 cut(s) 1240
AfiI CCNNNNNNNGG 2 cut(s) 139, 573
AflIII ACRYGT 1 cut(s) 830
AjnI CCWGG 1 cut(s) 101
AjuI GAANNNNNNNTTGG 4 cut(s) 770, 802, 953, 985
AleI CACNNNNGTG 1 cut(s) 485
AluBI AGCT 4 cut(s) 47, 158, 929, 969
AluI AGCT 4 cut(s) 47, 158, 929, 969
Alw21I GWGCWC 2 cut(s) 760, 904
Alw26I GTCTC 1 cut(s) 1055
Alw44I GTGCAC 1 cut(s) 900
AlwI GGATC 1 cut(s) 450
Aor13HI TCCGGA 1 cut(s) 706
AoxI GGCC 6 cut(s) 14, 124, 235, 307, 646, 1439
ApaLI GTGCAC 1 cut(s) 900
ApeKI GCWGC 6 cut(s) 330, 911, 929, 977, 1274, 1277
ApoI RAATTY 2 cut(s) 531, 797
ArsI GACNNNNNNTTYG 4 cut(s) 872, 904, 1094, 1126
AspLEI GCGC 4 cut(s) 1131, 1200, 1381, 1391
AspS9I GGNCC 2 cut(s) 646, 1081
AsuHPI GGTGA 2 cut(s) 82, 1435
AvaII GGWCC 1 cut(s) 1081
BaeGI GKGCMC 1 cut(s) 904
BalI TGGCCA 1 cut(s) 126
BauI CACGAG 2 cut(s) 721, 1463
Bbv12I GWGCWC 2 cut(s) 760, 904
BbvI GCAGC 6 cut(s) 342, 898, 916, 964, 1261, 1289
BccI CCATC 3 cut(s) 279, 819, 1309
BceAI ACGGC 2 cut(s) 760, 1265
BcgI CGANNNNNNTGC 2 cut(s) 1495, 1529
BciT130I CCWGG 1 cut(s) 103
BciVI GTATCC 1 cut(s) 1583
BclI TGATCA 1 cut(s) 1333
BcoDI GTCTC 1 cut(s) 1055
BfmI CTRYAG 4 cut(s) 852, 930, 1056, 1275
BfoI RGCGCY 1 cut(s) 1392
BfuI GTATCC 1 cut(s) 1583
BglII AGATCT 1 cut(s) 375
BisI GCNGC 6 cut(s) 331, 912, 930, 978, 1275, 1278
BlsI GCNGC 6 cut(s) 332, 913, 931, 979, 1276, 1279
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 1081
BmgT120I GGNCC 2 cut(s) 646, 1081
BmiI GGNNCC 3 cut(s) 1082, 1083, 1299
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 4 cut(s) 63, 188, 332, 616
BpmI CTGGAG 2 cut(s) 364, 1242
BsaWI WCCGGW 1 cut(s) 706
BsaXI ACNNNNNCTCC 8 cut(s) 188, 194, 218, 224, 941, 971, 1048, 1078
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 573
Bse1I ACTGG 2 cut(s) 649, 1259
Bse3DI GCAATG 2 cut(s) 987, 1374
BseAI TCCGGA 1 cut(s) 706
BseBI CCWGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 2 cut(s) 139, 573
BseMI GCAATG 2 cut(s) 987, 1374
BseMII CTCAG 1 cut(s) 1512
BseNI ACTGG 2 cut(s) 649, 1259
BseSI GKGCMC 1 cut(s) 904
BseXI GCAGC 6 cut(s) 342, 898, 916, 964, 1261, 1289
BsgI GTGCAG 1 cut(s) 349
Bsh1236I CGCG 1 cut(s) 447
Bsh1285I CGRYCG 1 cut(s) 1515
BshFI GGCC 6 cut(s) 16, 126, 237, 309, 648, 1441
BsiEI CGRYCG 1 cut(s) 1515
BsiHKAI GWGCWC 2 cut(s) 760, 904
BsiSI CCGG 1 cut(s) 707
BslFI GGGAC 4 cut(s) 53, 550, 1094, 1259
BslI CCNNNNNNNGG 2 cut(s) 139, 573
BsmAI GTCTC 1 cut(s) 1055
BsmFI GGGAC 4 cut(s) 53, 550, 1094, 1259
BsmI GAATGC 2 cut(s) 61, 747
BsnI GGCC 6 cut(s) 16, 126, 237, 309, 648, 1441
Bsp1286I GDGCHC 2 cut(s) 760, 904
Bsp13I TCCGGA 1 cut(s) 706
Bsp143I GATC 6 cut(s) 375, 442, 984, 1219, 1333, 1512
BspACI CCGC 7 cut(s) 67, 194, 277, 290, 782, 1167, 1325
BspANI GGCC 6 cut(s) 16, 126, 237, 309, 648, 1441
BspCNI CTCAG 1 cut(s) 1513
BspEI TCCGGA 1 cut(s) 706
BspFNI CGCG 1 cut(s) 447
BspHI TCATGA 1 cut(s) 555
BspLI GGNNCC 3 cut(s) 1082, 1083, 1299
BspMAI CTGCAG 2 cut(s) 934, 1279
BspPI GGATC 1 cut(s) 450
BsrBI CCGCTC 1 cut(s) 67
BsrDI GCAATG 2 cut(s) 987, 1374
BsrI ACTGG 2 cut(s) 649, 1259
BssMI GATC 6 cut(s) 375, 442, 984, 1219, 1333, 1512
BssSI CACGAG 2 cut(s) 721, 1463
Bst2BI CACGAG 2 cut(s) 721, 1463
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 6 cut(s) 190, 809, 906, 1407, 1477, 1485
Bst6I CTCTTC 1 cut(s) 513
BstAPI GCANNNNNTGC 1 cut(s) 908
BstC8I GCNNGC 3 cut(s) 526, 1383, 1387
BstDEI CTNAG 1 cut(s) 1521
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 1 cut(s) 447
BstH2I RGCGCY 1 cut(s) 1392
BstHHI GCGC 4 cut(s) 1131, 1200, 1381, 1391
BstKTI GATC 6 cut(s) 378, 445, 987, 1222, 1336, 1515
BstMAI GTCTC 1 cut(s) 1055
BstMBI GATC 6 cut(s) 375, 442, 984, 1219, 1333, 1512
BstMCI CGRYCG 1 cut(s) 1515
BstMWI GCNNNNNNNGC 5 cut(s) 73, 257, 899, 908, 935
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 3 cut(s) 1167, 1206, 1438
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 4 cut(s) 852, 930, 1056, 1275
BstSLI GKGCMC 1 cut(s) 904
BstUI CGCG 1 cut(s) 447
BstV1I GCAGC 6 cut(s) 342, 898, 916, 964, 1261, 1289
BstX2I RGATCY 1 cut(s) 375
BstXI CCANNNNNNTGG 2 cut(s) 317, 1031
BstYI RGATCY 1 cut(s) 375
BsuI GTATCC 1 cut(s) 1583
BsuRI GGCC 6 cut(s) 16, 126, 237, 309, 648, 1441
BtgZI GCGATG 1 cut(s) 838
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 2 cut(s) 775, 1481
Cac8I GCNNGC 3 cut(s) 526, 1383, 1387
CciI TCATGA 1 cut(s) 555
CfoI GCGC 4 cut(s) 1131, 1200, 1381, 1391
Cfr13I GGNCC 2 cut(s) 646, 1081
Csp6I GTAC 1 cut(s) 1239
CviQI GTAC 1 cut(s) 1239
DdeI CTNAG 1 cut(s) 1521
DpnI GATC 6 cut(s) 377, 444, 986, 1221, 1335, 1514
DpnII GATC 6 cut(s) 375, 442, 984, 1219, 1333, 1512
DraI TTTAAA 2 cut(s) 367, 945
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
EciI GGCGGA 1 cut(s) 305
Eco147I AGGCCT 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 1081
EcoO109I RGGNCCY 1 cut(s) 1081
EcoRII CCWGG 1 cut(s) 101
EcoT22I ATGCAT 1 cut(s) 253
FaqI GGGAC 4 cut(s) 53, 550, 1094, 1259
FauI CCCGC 3 cut(s) 60, 270, 1318
FauNDI CATATG 1 cut(s) 873
FbaI TGATCA 1 cut(s) 1333
Fnu4HI GCNGC 6 cut(s) 331, 912, 930, 978, 1275, 1278
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 6 cut(s) 331, 912, 930, 978, 1275, 1278
FspI TGCGCA 1 cut(s) 1380
GlaI GCGC 4 cut(s) 1130, 1199, 1380, 1390
GluI GCNGC 6 cut(s) 331, 912, 930, 978, 1275, 1278
GsuI CTGGAG 2 cut(s) 364, 1242
HaeII RGCGCY 1 cut(s) 1392
HaeIII GGCC 6 cut(s) 16, 126, 237, 309, 648, 1441
HapII CCGG 1 cut(s) 707
HhaI GCGC 4 cut(s) 1131, 1200, 1381, 1391
Hin6I GCGC 4 cut(s) 1129, 1198, 1379, 1389
HinP1I GCGC 4 cut(s) 1129, 1198, 1379, 1389
HindIII AAGCTT 1 cut(s) 967
HinfI GANTC 4 cut(s) 203, 737, 1063, 1523
HpaII CCGG 1 cut(s) 707
HphI GGTGA 2 cut(s) 82, 1435
Hpy166II GTNNAC 3 cut(s) 902, 1364, 1537
Hpy188I TCNGA 9 cut(s) 142, 186, 208, 400, 742, 796, 813, 1182, 1499
Hpy188III TCNNGA 8 cut(s) 381, 556, 707, 1095, 1228, 1289, 1310, 1465
Hpy8I GTNNAC 3 cut(s) 902, 1364, 1537
Hpy99I CGWCG 3 cut(s) 672, 746, 1499
HpyAV CCTTC 7 cut(s) 248, 575, 870, 1009, 1096, 1118, 1359
HpyCH4III ACNGT 6 cut(s) 190, 809, 906, 1407, 1477, 1485
HpyCH4IV ACGT 3 cut(s) 468, 667, 832
HpyF10VI GCNNNNNNNGC 5 cut(s) 73, 257, 899, 908, 935
HpyF3I CTNAG 1 cut(s) 1521
HpySE526I ACGT 3 cut(s) 468, 667, 832
HspAI GCGC 4 cut(s) 1129, 1198, 1379, 1389
KflI GGGWCCC 1 cut(s) 1081
Kpn2I TCCGGA 1 cut(s) 706
Ksp22I TGATCA 1 cut(s) 1333
Kzo9I GATC 6 cut(s) 375, 442, 984, 1219, 1333, 1512
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 6 cut(s) 342, 898, 916, 964, 1261, 1289
LweI GCATC 4 cut(s) 63, 188, 332, 616
MaeII ACGT 3 cut(s) 468, 667, 832
MaeIII GTNAC 5 cut(s) 86, 455, 1187, 1471, 1477
MalI GATC 6 cut(s) 377, 444, 986, 1221, 1335, 1514
MbiI CCGCTC 1 cut(s) 67
MboI GATC 6 cut(s) 375, 442, 984, 1219, 1333, 1512
MboII GAAGA 5 cut(s) 64, 155, 530, 1159, 1229
MfeI CAATTG 3 cut(s) 167, 630, 1068
MflI RGATCY 1 cut(s) 375
MhlI GDGCHC 2 cut(s) 760, 904
MlsI TGGCCA 1 cut(s) 126
MluNI TGGCCA 1 cut(s) 126
MlyI GAGTC 3 cut(s) 212, 1057, 1532
MmeI TCCRAC 4 cut(s) 378, 765, 978, 1477
Mox20I TGGCCA 1 cut(s) 126
Mph1103I ATGCAT 1 cut(s) 253
MroI TCCGGA 1 cut(s) 706
MscI TGGCCA 1 cut(s) 126
MseI TTAA 8 cut(s) 135, 150, 228, 366, 437, 471, 561, 944
MslI CAYNNNNRTG 2 cut(s) 340, 485
Msp20I TGGCCA 1 cut(s) 126
MspI CCGG 1 cut(s) 707
MspR9I CCNGG 1 cut(s) 103
MunI CAATTG 3 cut(s) 167, 630, 1068
Mva1269I GAATGC 2 cut(s) 61, 747
MvaI CCWGG 1 cut(s) 103
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 5 cut(s) 73, 257, 899, 908, 935
NdeI CATATG 1 cut(s) 873
NdeII GATC 6 cut(s) 375, 442, 984, 1219, 1333, 1512
NlaIV GGNNCC 3 cut(s) 1082, 1083, 1299
NmuCI GTSAC 3 cut(s) 86, 455, 1187
NsbI TGCGCA 1 cut(s) 1380
NsiI ATGCAT 1 cut(s) 253
NspI RCATGY 3 cut(s) 1167, 1206, 1438
OliI CACNNNNGTG 1 cut(s) 485
PagI TCATGA 1 cut(s) 555
PceI AGGCCT 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 451
PctI GAATGC 2 cut(s) 61, 747
PfeI GAWTC 1 cut(s) 737
PflFI GACNNNGTC 1 cut(s) 1173
PkrI GCNGC 6 cut(s) 332, 913, 931, 979, 1276, 1279
Ple19I CGATCG 1 cut(s) 1515
PleI GAGTC 3 cut(s) 211, 1057, 1531
PpsI GAGTC 3 cut(s) 211, 1057, 1531
PpuMI RGGWCCY 1 cut(s) 1081
Psp1406I AACGTT 1 cut(s) 468
Psp5II RGGWCCY 1 cut(s) 1081
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 3 cut(s) 1082, 1083, 1299
PspPI GGNCC 2 cut(s) 646, 1081
PspPPI RGGWCCY 1 cut(s) 1081
PstI CTGCAG 2 cut(s) 934, 1279
PsuI RGATCY 1 cut(s) 375
PsyI GACNNNGTC 1 cut(s) 1173
PvuI CGATCG 1 cut(s) 1515
RsaI GTAC 1 cut(s) 1240
RsaNI GTAC 1 cut(s) 1239
RseI CAYNNNNRTG 2 cut(s) 340, 485
SaqAI TTAA 8 cut(s) 135, 150, 228, 366, 437, 471, 561, 944
SatI GCNGC 6 cut(s) 331, 912, 930, 978, 1275, 1278
Sau3AI GATC 6 cut(s) 375, 442, 984, 1219, 1333, 1512
Sau96I GGNCC 2 cut(s) 646, 1081
SchI GAGTC 3 cut(s) 212, 1057, 1532
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 2 cut(s) 760, 904
SfaNI GCATC 4 cut(s) 63, 188, 332, 616
SfcI CTRYAG 4 cut(s) 852, 930, 1056, 1275
SinI GGWCC 1 cut(s) 1081
SmiMI CAYNNNNRTG 2 cut(s) 340, 485
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 7 cut(s) 67, 194, 277, 290, 782, 1167, 1325
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 1 cut(s) 101
TaaI ACNGT 6 cut(s) 190, 809, 906, 1407, 1477, 1485
TaiI ACGT 3 cut(s) 471, 670, 835
TaqI TCGA 4 cut(s) 304, 688, 987, 1227
TfiI GAWTC 1 cut(s) 737
Tru1I TTAA 8 cut(s) 135, 150, 228, 366, 437, 471, 561, 944
Tru9I TTAA 8 cut(s) 135, 150, 228, 366, 437, 471, 561, 944
TscAI CASTG 2 cut(s) 775, 1488
TseFI GTSAC 3 cut(s) 86, 455, 1187
TseI GCWGC 6 cut(s) 330, 911, 929, 977, 1274, 1277
Tsp45I GTSAC 3 cut(s) 86, 455, 1187
TspDTI ATGAA 8 cut(s) 65, 368, 587, 791, 978, 1041, 1160, 1230
TspGWI ACGGA 1 cut(s) 1263
TspRI CASTG 2 cut(s) 775, 1488
Tth111I GACNNNGTC 1 cut(s) 1173
VneI GTGCAC 1 cut(s) 900
VpaK11BI GGWCC 1 cut(s) 1081
XapI RAATTY 2 cut(s) 531, 797
XceI RCATGY 3 cut(s) 1167, 1206, 1438
XcmI CCANNNNNNNNNTGG 1 cut(s) 417
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.