Rh2AG351900

Dehydrogenase reductase SDR family member on chromosome

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
51842166 .. 51849476
7311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG351900.1

Sequence Viewer

Length: 1212 bp
ATGGCCCAGAGTGGAGGGAGCTCTAAACCCAGTCCCACAAATCGCCATAGAAAGCCGTCAGCAAGCTCTCTTCGACGCTCAGTCCCAGCTTCAATTCAAGAAATTTACAAGACGATGAAGGAGGCATTGGATTTTGTACTGTCCATGGAATTCTGGAGAATGGGCCTGCGATGGACTCTCAGTCTTCTCATTTCTTACTGGCACCTCTTCTTCGCCTCGACTACTCCTCCTCCTTCCAGATCACCGCCTCCCTCATCTCCGTCGAGGCCCGTCTGCATCATCACCGGTGCGACTTCTGGATTGGGCGCCGCCGCGGCCCATGCTCTCTCCGCTCGTGGCTTCTTTGTGGTTCTCGTTGGACGCTCATCTCGCTTGTTAGAAAAGACGGTGATGGAAATTAAGAGGAAGAATGAGAGTGCACAGCTGAAAGCTTTCGAGGTTGATCTCTCATCATTCCAGTCGATTCTTCGGTTTAAAGCCTCCTTACAGCAGTGGCTTTCCGACTCGCAAATGCACTCTTCGATCCAACTCCTAATTAACAATGCTGGAATATTTGCTACGTCGTCTAGATTCACCTCTGAAGGCTATGATCAGATGATGGCTACAAATTACTTGAGTGCATTTTTTCTTAGTAAACTGTTGTTACCGCTTCTCAGAAACAGCTCGATTCCTTCCCGTATAGTGAATGTCACATCTTTCACACATCGAAGTGTATCGAATATACAGGTTGACAAGGAGACTGTATCTGGGAAGTGCTTCGGCAGATTAAAAAGATACCCATATGCTCATGTATATGAGTATTCCAAATTGTTCCTACTGCTCTTCTCCTATGAGCTTCATCGCCAACTTGGCTTGATGGACATATCTCGTCACGTCTCCGTCATTGCTGTGGATCCTGGTGTTGTTGAAACCAACATCTTGCAAGAAGTTCCTCCATGCCTATCCAGTTTGGCCAGTAAAGTTTTGAGAAGTCTTTGGCTCTTGCAGTCACCTGAAGTTGGAATCAGTTCCATTCTCGATGCAGCATTTGCTCCACCAGAAACATCTGGAGTTTACTTTTTTGGTGGAAAGGGCAACGCTGTCAGCTCTTCTATGCTTTCATATGATGCCAAACTTGCACAGGAACTTTGGAGTACATCGTCTGATCTATTTTTAGAGTCACAGCTTGCTTTCAAGGAAACCTCCACTTCTGTATCAAACTTTGTATCATAG
Functional Annotation

Protein Analysis

403

Amino Acids

44.53

Weight (kDa)

9.62

Isoelectric Point (pI)

58.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 91 - 234 2.8e-23 short chain dehydrogenase
adh_short_C2 PF13561 96 - 238 1e-13 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 201, 305
AccBSI CCGCTC 1 cut(s) 332
AccII CGCG 1 cut(s) 314
AciI CCGC 6 cut(s) 245, 309, 312, 314, 330, 647
AclWI GGATC 3 cut(s) 517, 887, 900
AcoI YGGCCR 1 cut(s) 951
AcsI RAATTY 2 cut(s) 102, 149
AcuI CTGAAG 2 cut(s) 600, 1014
AcyI GRCGYC 1 cut(s) 306
AfaI GTAC 2 cut(s) 138, 1135
AfiI CCNNNNNNNGG 1 cut(s) 998
AgeI ACCGGT 1 cut(s) 284
AgsI TTSAA 4 cut(s) 93, 98, 908, 1174
AhdI GACNNNNNGTC 2 cut(s) 80, 180
AjiI CACGTC 1 cut(s) 874
AjnI CCWGG 1 cut(s) 895
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AluBI AGCT 9 cut(s) 21, 66, 89, 424, 431, 663, 835, 1086, 1165
AluI AGCT 9 cut(s) 21, 66, 89, 424, 431, 663, 835, 1086, 1165
Alw21I GWGCWC 2 cut(s) 23, 421
Alw26I GTCTC 2 cut(s) 731, 880
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 3 cut(s) 517, 887, 900
AoxI GGCC 5 cut(s) 3, 163, 266, 315, 951
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 1022
ApoI RAATTY 2 cut(s) 102, 149
AsiGI ACCGGT 1 cut(s) 284
Asp700I GAANNNNTTC 3 cut(s) 431, 755, 1006
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 4 cut(s) 4, 163, 267, 316
AsuHPI GGTGA 5 cut(s) 234, 274, 400, 565, 981
BaeGI GKGCMC 1 cut(s) 421
BaeI ACNNNNGTAYC 2 cut(s) 1176, 1209
BalI TGGCCA 1 cut(s) 953
BamHI GGATCC 1 cut(s) 892
BanI GGYRCC 2 cut(s) 201, 305
BanII GRGCYC 1 cut(s) 23
BauI CACGAG 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 176
Bbv12I GWGCWC 2 cut(s) 23, 421
BbvI GCAGC 1 cut(s) 1034
BccI CCATC 4 cut(s) 165, 385, 592, 850
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 897
BclI TGATCA 1 cut(s) 589
BcoDI GTCTC 2 cut(s) 731, 880
BfaI CTAG 1 cut(s) 567
BfoI RGCGCY 1 cut(s) 309
BglI GCCNNNNNGGC 2 cut(s) 314, 849
BisI GCNGC 4 cut(s) 309, 312, 315, 1023
BlsI GCNGC 4 cut(s) 310, 313, 316, 1024
Bme1390I CCNGG 1 cut(s) 897
BmeRI GACNNNNNGTC 2 cut(s) 80, 180
BmgBI CACGTC 1 cut(s) 874
BmgT120I GGNCC 4 cut(s) 4, 163, 267, 316
BmiI GGNNCC 3 cut(s) 203, 307, 894
BmrFI CCNGG 1 cut(s) 897
BmrI ACTGGG 1 cut(s) 24
BmsI GCATC 3 cut(s) 285, 1009, 1096
BmuI ACTGGG 1 cut(s) 24
BpiI GAAGAC 1 cut(s) 176
BpmI CTGGAG 2 cut(s) 175, 1068
BpuEI CTTGAG 1 cut(s) 634
BsaHI GRCGYC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 144, 312
BsaWI WCCGGW 1 cut(s) 284
BsaXI ACNNNNNCTCC 4 cut(s) 211, 214, 241, 244
Bsc4I CCNNNNNNNGG 1 cut(s) 998
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 5 cut(s) 30, 203, 457, 945, 954
Bse3DI GCAATG 1 cut(s) 882
BseBI CCWGG 1 cut(s) 897
BseDI CCNNGG 2 cut(s) 144, 312
BseLI CCNNNNNNNGG 1 cut(s) 998
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 3 cut(s) 93, 193, 667
BseNI ACTGG 5 cut(s) 30, 203, 457, 945, 954
BseRI GAGGAG 2 cut(s) 216, 219
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 1 cut(s) 1034
BseYI CCCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 314
BshFI GGCC 5 cut(s) 5, 165, 268, 317, 953
BshNI GGYRCC 2 cut(s) 201, 305
BshTI ACCGGT 1 cut(s) 284
BsiHKAI GWGCWC 2 cut(s) 23, 421
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 2 cut(s) 18, 68
BslI CCNNNNNNNGG 1 cut(s) 998
BsmAI GTCTC 2 cut(s) 731, 880
BsmBI CGTCTC 1 cut(s) 880
BsmFI GGGAC 2 cut(s) 18, 68
BsnI GGCC 5 cut(s) 5, 165, 268, 317, 953
Bsp1286I GDGCHC 2 cut(s) 23, 421
Bsp143I GATC 6 cut(s) 239, 442, 522, 589, 892, 1144
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 6 cut(s) 245, 309, 312, 314, 330, 647
BspANI GGCC 5 cut(s) 5, 165, 268, 317, 953
BspCNI CTCAG 3 cut(s) 92, 192, 666
BspFNI CGCG 1 cut(s) 314
BspLI GGNNCC 3 cut(s) 203, 307, 894
BspPI GGATC 3 cut(s) 517, 887, 900
BspQI GCTCTTC 2 cut(s) 827, 1093
BspT107I GGYRCC 2 cut(s) 201, 305
BsrBI CCGCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 882
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 5 cut(s) 30, 203, 457, 945, 954
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 2 cut(s) 144, 312
BssMI GATC 6 cut(s) 239, 442, 522, 589, 892, 1144
BssNI GRCGYC 1 cut(s) 306
BssSI CACGAG 1 cut(s) 333
BssT1I CCWWGG 1 cut(s) 144
Bst2BI CACGAG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 897
Bst4CI ACNGT 4 cut(s) 141, 388, 639, 742
Bst6I CTCTTC 5 cut(s) 75, 212, 523, 827, 1093
BstACI GRCGYC 1 cut(s) 306
BstAPI GCANNNNNTGC 1 cut(s) 1028
BstC8I GCNNGC 3 cut(s) 64, 167, 1167
BstDEI CTNAG 4 cut(s) 79, 179, 629, 653
BstDSI CCRYGG 2 cut(s) 144, 312
BstFNI CGCG 1 cut(s) 314
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 6 cut(s) 242, 445, 525, 592, 895, 1147
BstMAI GTCTC 2 cut(s) 731, 880
BstMBI GATC 6 cut(s) 239, 442, 522, 589, 892, 1144
BstMWI GCNNNNNNNGC 7 cut(s) 314, 320, 329, 369, 849, 1028, 1115
BstNI CCWGG 1 cut(s) 897
BstSCI CCNGG 1 cut(s) 895
BstSLI GKGCMC 1 cut(s) 421
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 1034
BstV2I GAAGAC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 892
BstYI RGATCY 1 cut(s) 892
BsuRI GGCC 5 cut(s) 5, 165, 268, 317, 953
BtgI CCRYGG 2 cut(s) 144, 312
BtgZI GCGATG 2 cut(s) 184, 824
BtrI CACGTC 1 cut(s) 874
BtsI GCAGTG 1 cut(s) 497
BtsIMutI CAGTG 1 cut(s) 497
Cac8I GCNNGC 3 cut(s) 64, 167, 1167
CfoI GCGC 1 cut(s) 308
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 4 cut(s) 4, 163, 267, 316
Cfr42I CCGCGG 1 cut(s) 315
CseI GACGC 2 cut(s) 84, 369
Csp6I GTAC 2 cut(s) 137, 1134
CspAI ACCGGT 1 cut(s) 284
CviAII CATG 4 cut(s) 145, 320, 788, 936
CviQI GTAC 2 cut(s) 137, 1134
DdeI CTNAG 4 cut(s) 79, 179, 629, 653
DinI GGCGCC 1 cut(s) 307
DpnI GATC 6 cut(s) 241, 444, 524, 591, 894, 1146
DpnII GATC 6 cut(s) 239, 442, 522, 589, 892, 1144
DraI TTTAAA 1 cut(s) 475
DriI GACNNNNNGTC 2 cut(s) 80, 180
EaeI YGGCCR 1 cut(s) 951
Eam1104I CTCTTC 5 cut(s) 75, 212, 523, 827, 1093
Eam1105I GACNNNNNGTC 2 cut(s) 80, 180
EarI CTCTTC 5 cut(s) 75, 212, 523, 827, 1093
Ecl136II GAGCTC 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 2 cut(s) 600, 1014
EcoICRI GAGCTC 1 cut(s) 21
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 895
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 23
EgeI GGCGCC 1 cut(s) 307
EheI GGCGCC 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 880
FaeI CATG 4 cut(s) 148, 323, 791, 939
FaqI GGGAC 2 cut(s) 18, 68
FatI CATG 4 cut(s) 144, 319, 787, 935
FauNDI CATATG 2 cut(s) 781, 1102
FbaI TGATCA 1 cut(s) 589
Fnu4HI GCNGC 4 cut(s) 309, 312, 315, 1023
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 4 cut(s) 309, 312, 315, 1023
FspBI CTAG 1 cut(s) 567
GlaI GCGC 1 cut(s) 307
GluI GCNGC 4 cut(s) 309, 312, 315, 1023
GsaI CCCAGC 1 cut(s) 89
GsuI CTGGAG 2 cut(s) 175, 1068
HaeII RGCGCY 1 cut(s) 309
HaeIII GGCC 5 cut(s) 5, 165, 268, 317, 953
HapII CCGG 1 cut(s) 285
HgaI GACGC 2 cut(s) 84, 369
HhaI GCGC 1 cut(s) 308
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 4 cut(s) 148, 323, 791, 939
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HindIII AAGCTT 1 cut(s) 429
HinfI GANTC 7 cut(s) 175, 463, 503, 570, 667, 1002, 1157
HpaII CCGG 1 cut(s) 285
HphI GGTGA 5 cut(s) 234, 274, 400, 565, 981
Hpy166II GTNNAC 4 cut(s) 419, 635, 730, 1054
Hpy188I TCNGA 5 cut(s) 502, 580, 594, 656, 1144
Hpy188III TCNNGA 7 cut(s) 98, 154, 237, 297, 567, 1016, 1047
Hpy8I GTNNAC 4 cut(s) 419, 635, 730, 1054
Hpy99I CGWCG 3 cut(s) 78, 265, 565
HpyAV CCTTC 4 cut(s) 112, 243, 575, 681
HpyCH4III ACNGT 4 cut(s) 141, 388, 639, 742
HpyCH4IV ACGT 2 cut(s) 560, 873
HpyCH4V TGCA 8 cut(s) 276, 419, 514, 620, 922, 985, 1022, 1118
HpyF10VI GCNNNNNNNGC 7 cut(s) 314, 320, 329, 369, 849, 1028, 1115
HpyF3I CTNAG 4 cut(s) 79, 179, 629, 653
HpySE526I ACGT 2 cut(s) 560, 873
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 4 cut(s) 148, 323, 791, 939
HspAI GCGC 1 cut(s) 306
KasI GGCGCC 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 589
KspI CCGCGG 1 cut(s) 315
Kzo9I GATC 6 cut(s) 239, 442, 522, 589, 892, 1144
LguI GCTCTTC 2 cut(s) 827, 1093
LmnI GCTCC 2 cut(s) 18, 1036
Lsp1109I GCAGC 1 cut(s) 1034
LweI GCATC 3 cut(s) 285, 1009, 1096
MaeI CTAG 1 cut(s) 567
MaeII ACGT 2 cut(s) 560, 873
MaeIII GTNAC 5 cut(s) 642, 688, 869, 987, 1158
MalI GATC 6 cut(s) 241, 444, 524, 591, 894, 1146
MbiI CCGCTC 1 cut(s) 332
MboI GATC 6 cut(s) 239, 442, 522, 589, 892, 1144
MboII GAAGA 9 cut(s) 62, 176, 199, 202, 418, 458, 510, 814, 1080
MflI RGATCY 1 cut(s) 892
MhlI GDGCHC 2 cut(s) 23, 421
MlsI TGGCCA 1 cut(s) 953
MluCI AATT 7 cut(s) 93, 102, 149, 396, 534, 607, 806
MluNI TGGCCA 1 cut(s) 953
Mly113I GGCGCC 1 cut(s) 306
MlyI GAGTC 3 cut(s) 169, 497, 1166
MmeI TCCRAC 4 cut(s) 337, 525, 550, 979
Mox20I TGGCCA 1 cut(s) 953
MroXI GAANNNNTTC 3 cut(s) 431, 755, 1006
MscI TGGCCA 1 cut(s) 953
MseI TTAA 4 cut(s) 399, 474, 537, 767
MslI CAYNNNNRTG 3 cut(s) 708, 792, 887
Msp20I TGGCCA 1 cut(s) 953
MspA1I CMGCKG 2 cut(s) 314, 424
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 897
MvaI CCWGG 1 cut(s) 897
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 7 cut(s) 314, 320, 329, 369, 849, 1028, 1115
NarI GGCGCC 1 cut(s) 306
NcoI CCATGG 1 cut(s) 144
NdeI CATATG 2 cut(s) 781, 1102
NdeII GATC 6 cut(s) 239, 442, 522, 589, 892, 1144
NlaIII CATG 4 cut(s) 148, 323, 791, 939
NlaIV GGNNCC 3 cut(s) 203, 307, 894
NmuCI GTSAC 4 cut(s) 688, 869, 987, 1158
PciSI GCTCTTC 2 cut(s) 827, 1093
PdmI GAANNNNTTC 3 cut(s) 431, 755, 1006
PfeI GAWTC 4 cut(s) 463, 570, 667, 1002
PinAI ACCGGT 1 cut(s) 284
PkrI GCNGC 4 cut(s) 310, 313, 316, 1024
PleI GAGTC 3 cut(s) 169, 497, 1165
PluTI GGCGCC 1 cut(s) 309
PpsI GAGTC 3 cut(s) 169, 497, 1165
Psp124BI GAGCTC 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 895
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 895
PspN4I GGNNCC 3 cut(s) 203, 307, 894
PspPI GGNCC 4 cut(s) 4, 163, 267, 316
PsuI RGATCY 1 cut(s) 892
PvuII CAGCTG 1 cut(s) 424
RsaI GTAC 2 cut(s) 138, 1135
RsaNI GTAC 2 cut(s) 137, 1134
RseI CAYNNNNRTG 3 cut(s) 708, 792, 887
SacI GAGCTC 1 cut(s) 23
SacII CCGCGG 1 cut(s) 315
SapI GCTCTTC 2 cut(s) 827, 1093
SaqAI TTAA 4 cut(s) 399, 474, 537, 767
SatI GCNGC 4 cut(s) 309, 312, 315, 1023
Sau3AI GATC 6 cut(s) 239, 442, 522, 589, 892, 1144
Sau96I GGNCC 4 cut(s) 4, 163, 267, 316
SchI GAGTC 3 cut(s) 169, 497, 1166
ScrFI CCNGG 1 cut(s) 897
SduI GDGCHC 2 cut(s) 23, 421
SfaNI GCATC 3 cut(s) 285, 1009, 1096
SfoI GGCGCC 1 cut(s) 307
Sfr303I CCGCGG 1 cut(s) 315
SgrAI CRCCGGYG 1 cut(s) 284
SgrBI CCGCGG 1 cut(s) 315
SmiMI CAYNNNNRTG 3 cut(s) 708, 792, 887
SmlI CTYRAG 1 cut(s) 613
SmoI CTYRAG 1 cut(s) 613
Sse9I AATT 7 cut(s) 93, 102, 149, 396, 534, 607, 806
SsiI CCGC 6 cut(s) 245, 309, 312, 314, 330, 647
SspDI GGCGCC 1 cut(s) 305
SspI AATATT 1 cut(s) 552
SspMI CTAG 1 cut(s) 567
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 895
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 4 cut(s) 141, 388, 639, 742
TaiI ACGT 2 cut(s) 563, 876
TasI AATT 7 cut(s) 93, 102, 149, 396, 534, 607, 806
TatI WGTACW 2 cut(s) 136, 1133
TauI GCSGC 3 cut(s) 311, 314, 317
TfiI GAWTC 4 cut(s) 463, 570, 667, 1002
Tru1I TTAA 4 cut(s) 399, 474, 537, 767
Tru9I TTAA 4 cut(s) 399, 474, 537, 767
TscAI CASTG 1 cut(s) 497
TseFI GTSAC 4 cut(s) 688, 869, 987, 1158
TseI GCWGC 1 cut(s) 1022
Tsp45I GTSAC 4 cut(s) 688, 869, 987, 1158
TspDTI ATGAA 3 cut(s) 131, 827, 1089
TspGWI ACGGA 2 cut(s) 249, 868
TspRI CASTG 1 cut(s) 497
VneI GTGCAC 1 cut(s) 417
XapI RAATTY 2 cut(s) 102, 149
XbaI TCTAGA 1 cut(s) 566
XmnI GAANNNNTTC 3 cut(s) 431, 755, 1006
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.