Rmu_sc0009880.1_g000012

Dehydrogenase reductase SDR family member on chromosome

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009880.1
Physical Location & Seq
Forward (+)
41146 .. 43256
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009880.1_g000012.1.cds

Sequence Viewer

Length: 1212 bp
atggcccagagtggagggagctctaaacccagtcccacaaatcgccatagaaagccgtcagcaagctctcttcgacgctcagtctcggcttcaattcaagaaatttacaagacgatgaaggaggcattggattttgtactgtccatggaattctggagaatgggcctgcgatggactctcagtcttctcatctcttactggcacctcctcttcgcctcgactactactcctccttccagatcaccgcctccctcatctccgtcgaggcccgtctgcatcatcaccggcgcgacttctggattgggcgccgccgcggcccatgctctctccgctcgtggcttctttgtggttctcgttggacgctcatctcgcttgttagaaaagacggtgatggaaattaagaggaagaatgagagtgcacagctgaaagctttcgaggttgatctctcatcattccagtcgattctttggtttaaagactccctacagcagtggctttcttactcgcaaatgcactcttcgatccaactcctaattaacaacgctggaatacttgctacgtcgtctagattcacgtctgaaggctatgatcagatgatggctacaaattacttgagtgcattttttcttagtaaactattgttaccgcttctcagaaactgctcgattccttcccgtatagtgaatgtcacatctttcacacatcgaagtgtatcaaatatacaagttaacaaggagactgtatctgggaagtgcttcagcagattaaaaagatacccatatgctcttgtatatgagtattccaaattgttcctactgctcttctcctatgagcttcatcgccaacttggcttgatggacatatctcgtcacgtctccgtcattgctgtggatcctggtgttgttgaaaccaacatcttgcgagaagttcctccatgcctatccagtttggctggtaaagttttgagaagtctttggctcttgcagtcacctgaagttggaatcagttccattctccatgcagcatttgctccaccagaaacatctggagtttacttttttggtggaaagggcaacactgtcagctcttctatgctttcatatgatgccaaacttgctcaggaactttggagtacatcgtctgagctatttttagagtcacatcttgctttcaaggaaacctccacttctgtatcaaactttgtatcatag
Functional Annotation

Protein Analysis

403

Amino Acids

44.67

Weight (kDa)

9.67

Isoelectric Point (pI)

57.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 201, 305
AccBSI CCGCTC 1 cut(s) 332
AccII CGCG 2 cut(s) 290, 314
AciI CCGC 6 cut(s) 245, 309, 312, 314, 330, 647
AclWI GGATC 3 cut(s) 517, 887, 900
AcsI RAATTY 2 cut(s) 102, 149
AcuI CTGAAG 3 cut(s) 600, 742, 1014
AcyI GRCGYC 1 cut(s) 306
AfaI GTAC 2 cut(s) 138, 1135
AfiI CCNNNNNNNGG 1 cut(s) 998
AgsI TTSAA 4 cut(s) 93, 98, 908, 1174
AhdI GACNNNNNGTC 2 cut(s) 80, 180
AjiI CACGTC 2 cut(s) 576, 874
AjnI CCWGG 1 cut(s) 895
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AluBI AGCT 7 cut(s) 21, 66, 424, 431, 835, 1086, 1147
AluI AGCT 7 cut(s) 21, 66, 424, 431, 835, 1086, 1147
Alw21I GWGCWC 2 cut(s) 23, 421
Alw26I GTCTC 3 cut(s) 88, 731, 880
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 3 cut(s) 517, 887, 900
AlwNI CAGNNNCTG 1 cut(s) 660
AoxI GGCC 4 cut(s) 3, 163, 266, 315
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 1022
ApoI RAATTY 2 cut(s) 102, 149
Asp700I GAANNNNTTC 3 cut(s) 431, 755, 1006
AspLEI GCGC 2 cut(s) 290, 308
AspS9I GGNCC 4 cut(s) 4, 163, 267, 316
AsuHPI GGTGA 4 cut(s) 234, 274, 400, 981
BaeGI GKGCMC 1 cut(s) 421
BaeI ACNNNNGTAYC 2 cut(s) 1176, 1209
BamHI GGATCC 1 cut(s) 892
BanI GGYRCC 2 cut(s) 201, 305
BanII GRGCYC 1 cut(s) 23
BauI CACGAG 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 176
Bbv12I GWGCWC 2 cut(s) 23, 421
BbvI GCAGC 1 cut(s) 1034
BccI CCATC 4 cut(s) 165, 385, 592, 850
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 897
BclI TGATCA 1 cut(s) 589
BcoDI GTCTC 3 cut(s) 88, 731, 880
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 485
BfoI RGCGCY 1 cut(s) 309
BglI GCCNNNNNGGC 2 cut(s) 314, 849
BisI GCNGC 4 cut(s) 309, 312, 315, 1023
BlsI GCNGC 4 cut(s) 310, 313, 316, 1024
Bme1390I CCNGG 1 cut(s) 897
BmeRI GACNNNNNGTC 2 cut(s) 80, 180
BmgBI CACGTC 2 cut(s) 576, 874
BmgT120I GGNCC 4 cut(s) 4, 163, 267, 316
BmiI GGNNCC 3 cut(s) 203, 307, 894
BmrFI CCNGG 1 cut(s) 897
BmrI ACTGGG 1 cut(s) 24
BmsI GCATC 2 cut(s) 285, 1096
BmuI ACTGGG 1 cut(s) 24
BpiI GAAGAC 1 cut(s) 176
BpmI CTGGAG 2 cut(s) 175, 1068
Bpu10I CCTNAGC 1 cut(s) 1119
BpuEI CTTGAG 1 cut(s) 634
BsaHI GRCGYC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 144, 312
BsaXI ACNNNNNCTCC 4 cut(s) 211, 214, 241, 244
Bsc4I CCNNNNNNNGG 1 cut(s) 998
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 4 cut(s) 30, 203, 457, 945
Bse3DI GCAATG 1 cut(s) 882
BseBI CCWGG 1 cut(s) 897
BseDI CCNNGG 2 cut(s) 144, 312
BseLI CCNNNNNNNGG 1 cut(s) 998
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 5 cut(s) 93, 193, 667, 1133, 1134
BseNI ACTGG 4 cut(s) 30, 203, 457, 945
BseRI GAGGAG 2 cut(s) 197, 219
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 1 cut(s) 1034
Bsh1236I CGCG 2 cut(s) 290, 314
BshFI GGCC 4 cut(s) 5, 165, 268, 317
BshNI GGYRCC 2 cut(s) 201, 305
BsiHKAI GWGCWC 2 cut(s) 23, 421
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 998
BsmAI GTCTC 3 cut(s) 88, 731, 880
BsmBI CGTCTC 1 cut(s) 880
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 4 cut(s) 5, 165, 268, 317
Bsp1286I GDGCHC 2 cut(s) 23, 421
Bsp143I GATC 5 cut(s) 239, 442, 522, 589, 892
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 6 cut(s) 245, 309, 312, 314, 330, 647
BspANI GGCC 4 cut(s) 5, 165, 268, 317
BspCNI CTCAG 5 cut(s) 92, 192, 666, 1132, 1135
BspFNI CGCG 2 cut(s) 290, 314
BspLI GGNNCC 3 cut(s) 203, 307, 894
BspPI GGATC 3 cut(s) 517, 887, 900
BspQI GCTCTTC 2 cut(s) 827, 1093
BspT107I GGYRCC 2 cut(s) 201, 305
BsrBI CCGCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 882
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 4 cut(s) 30, 203, 457, 945
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 2 cut(s) 144, 312
BssMI GATC 5 cut(s) 239, 442, 522, 589, 892
BssNI GRCGYC 1 cut(s) 306
BssSI CACGAG 1 cut(s) 333
BssT1I CCWWGG 1 cut(s) 144
Bst2BI CACGAG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 897
Bst4CI ACNGT 4 cut(s) 141, 388, 742, 1081
Bst6I CTCTTC 5 cut(s) 75, 215, 523, 827, 1093
BstACI GRCGYC 1 cut(s) 306
BstAPI GCANNNNNTGC 1 cut(s) 1028
BstC8I GCNNGC 2 cut(s) 64, 167
BstDEI CTNAG 6 cut(s) 79, 179, 629, 653, 1119, 1143
BstDSI CCRYGG 2 cut(s) 144, 312
BstFNI CGCG 2 cut(s) 290, 314
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 2 cut(s) 290, 308
BstKTI GATC 5 cut(s) 242, 445, 525, 592, 895
BstMAI GTCTC 3 cut(s) 88, 731, 880
BstMBI GATC 5 cut(s) 239, 442, 522, 589, 892
BstMWI GCNNNNNNNGC 7 cut(s) 314, 320, 329, 369, 849, 1028, 1115
BstNI CCWGG 1 cut(s) 897
BstSCI CCNGG 1 cut(s) 895
BstSFI CTRYAG 1 cut(s) 485
BstSLI GKGCMC 1 cut(s) 421
BstUI CGCG 2 cut(s) 290, 314
BstV1I GCAGC 1 cut(s) 1034
BstV2I GAAGAC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 892
BstYI RGATCY 1 cut(s) 892
BsuRI GGCC 4 cut(s) 5, 165, 268, 317
BtgI CCRYGG 2 cut(s) 144, 312
BtgZI GCGATG 2 cut(s) 184, 824
BtrI CACGTC 2 cut(s) 576, 874
BtsI GCAGTG 1 cut(s) 497
BtsIMutI CAGTG 2 cut(s) 497, 1077
Cac8I GCNNGC 2 cut(s) 64, 167
CaiI CAGNNNCTG 1 cut(s) 660
CfoI GCGC 2 cut(s) 290, 308
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 4 cut(s) 4, 163, 267, 316
Cfr42I CCGCGG 1 cut(s) 315
CseI GACGC 2 cut(s) 84, 369
Csp6I GTAC 2 cut(s) 137, 1134
CviAII CATG 4 cut(s) 145, 320, 936, 1019
CviQI GTAC 2 cut(s) 137, 1134
DdeI CTNAG 6 cut(s) 79, 179, 629, 653, 1119, 1143
DinI GGCGCC 1 cut(s) 307
DpnI GATC 5 cut(s) 241, 444, 524, 591, 894
DpnII GATC 5 cut(s) 239, 442, 522, 589, 892
DraI TTTAAA 1 cut(s) 475
DriI GACNNNNNGTC 2 cut(s) 80, 180
Eam1104I CTCTTC 5 cut(s) 75, 215, 523, 827, 1093
Eam1105I GACNNNNNGTC 2 cut(s) 80, 180
EarI CTCTTC 5 cut(s) 75, 215, 523, 827, 1093
Ecl136II GAGCTC 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 3 cut(s) 600, 742, 1014
EcoICRI GAGCTC 1 cut(s) 21
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 895
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 23
EgeI GGCGCC 1 cut(s) 307
EheI GGCGCC 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 880
FaeI CATG 4 cut(s) 148, 323, 939, 1022
FaqI GGGAC 1 cut(s) 18
FatI CATG 4 cut(s) 144, 319, 935, 1018
FauNDI CATATG 2 cut(s) 781, 1102
FbaI TGATCA 1 cut(s) 589
Fnu4HI GCNGC 4 cut(s) 309, 312, 315, 1023
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 4 cut(s) 309, 312, 315, 1023
FspBI CTAG 1 cut(s) 567
GlaI GCGC 2 cut(s) 289, 307
GluI GCNGC 4 cut(s) 309, 312, 315, 1023
GsuI CTGGAG 2 cut(s) 175, 1068
HaeII RGCGCY 1 cut(s) 309
HaeIII GGCC 4 cut(s) 5, 165, 268, 317
HapII CCGG 1 cut(s) 285
HgaI GACGC 2 cut(s) 84, 369
HhaI GCGC 2 cut(s) 290, 308
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 4 cut(s) 148, 323, 939, 1022
Hin6I GCGC 2 cut(s) 288, 306
HinP1I GCGC 2 cut(s) 288, 306
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HindIII AAGCTT 1 cut(s) 429
HinfI GANTC 7 cut(s) 175, 463, 479, 570, 667, 1002, 1157
HpaI GTTAAC 1 cut(s) 730
HpaII CCGG 1 cut(s) 285
HphI GGTGA 4 cut(s) 234, 274, 400, 981
Hpy166II GTNNAC 4 cut(s) 419, 635, 730, 1054
Hpy188I TCNGA 4 cut(s) 580, 594, 656, 1144
Hpy188III TCNNGA 7 cut(s) 98, 154, 237, 297, 567, 1047, 1121
Hpy8I GTNNAC 4 cut(s) 419, 635, 730, 1054
Hpy99I CGWCG 3 cut(s) 78, 265, 565
HpyAV CCTTC 4 cut(s) 112, 243, 575, 681
HpyCH4III ACNGT 4 cut(s) 141, 388, 742, 1081
HpyCH4IV ACGT 3 cut(s) 560, 575, 873
HpyCH4V TGCA 6 cut(s) 276, 419, 514, 620, 985, 1022
HpyF10VI GCNNNNNNNGC 7 cut(s) 314, 320, 329, 369, 849, 1028, 1115
HpyF3I CTNAG 6 cut(s) 79, 179, 629, 653, 1119, 1143
HpySE526I ACGT 3 cut(s) 560, 575, 873
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 4 cut(s) 148, 323, 939, 1022
HspAI GCGC 2 cut(s) 288, 306
KasI GGCGCC 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 589
KspAI GTTAAC 1 cut(s) 730
KspI CCGCGG 1 cut(s) 315
Kzo9I GATC 5 cut(s) 239, 442, 522, 589, 892
LguI GCTCTTC 2 cut(s) 827, 1093
LmnI GCTCC 2 cut(s) 18, 1036
Lsp1109I GCAGC 1 cut(s) 1034
LweI GCATC 2 cut(s) 285, 1096
MaeI CTAG 1 cut(s) 567
MaeII ACGT 3 cut(s) 560, 575, 873
MaeIII GTNAC 5 cut(s) 642, 688, 869, 987, 1158
MalI GATC 5 cut(s) 241, 444, 524, 591, 894
MbiI CCGCTC 1 cut(s) 332
MboI GATC 5 cut(s) 239, 442, 522, 589, 892
MboII GAAGA 7 cut(s) 62, 176, 202, 418, 510, 814, 1080
MflI RGATCY 1 cut(s) 892
MhlI GDGCHC 2 cut(s) 23, 421
MluCI AATT 7 cut(s) 93, 102, 149, 396, 534, 607, 806
Mly113I GGCGCC 1 cut(s) 306
MlyI GAGTC 3 cut(s) 169, 473, 1166
MmeI TCCRAC 3 cut(s) 337, 550, 979
MroXI GAANNNNTTC 3 cut(s) 431, 755, 1006
MseI TTAA 5 cut(s) 399, 474, 537, 729, 767
MslI CAYNNNNRTG 2 cut(s) 708, 887
MspA1I CMGCKG 2 cut(s) 314, 424
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 897
MvaI CCWGG 1 cut(s) 897
MvnI CGCG 2 cut(s) 290, 314
MwoI GCNNNNNNNGC 7 cut(s) 314, 320, 329, 369, 849, 1028, 1115
NarI GGCGCC 1 cut(s) 306
NcoI CCATGG 1 cut(s) 144
NdeI CATATG 2 cut(s) 781, 1102
NdeII GATC 5 cut(s) 239, 442, 522, 589, 892
NlaIII CATG 4 cut(s) 148, 323, 939, 1022
NlaIV GGNNCC 3 cut(s) 203, 307, 894
NmeAIII GCCGAG 1 cut(s) 65
NmuCI GTSAC 4 cut(s) 688, 869, 987, 1158
PciSI GCTCTTC 2 cut(s) 827, 1093
PdmI GAANNNNTTC 3 cut(s) 431, 755, 1006
PfeI GAWTC 4 cut(s) 463, 570, 667, 1002
PkrI GCNGC 4 cut(s) 310, 313, 316, 1024
PleI GAGTC 3 cut(s) 169, 473, 1165
PluTI GGCGCC 1 cut(s) 309
PpsI GAGTC 3 cut(s) 169, 473, 1165
Psp124BI GAGCTC 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 895
PspGI CCWGG 1 cut(s) 895
PspN4I GGNNCC 3 cut(s) 203, 307, 894
PspPI GGNCC 4 cut(s) 4, 163, 267, 316
PstNI CAGNNNCTG 1 cut(s) 660
PsuI RGATCY 1 cut(s) 892
PvuII CAGCTG 1 cut(s) 424
RsaI GTAC 2 cut(s) 138, 1135
RsaNI GTAC 2 cut(s) 137, 1134
RseI CAYNNNNRTG 2 cut(s) 708, 887
SacI GAGCTC 1 cut(s) 23
SacII CCGCGG 1 cut(s) 315
SapI GCTCTTC 2 cut(s) 827, 1093
SaqAI TTAA 5 cut(s) 399, 474, 537, 729, 767
SatI GCNGC 4 cut(s) 309, 312, 315, 1023
Sau3AI GATC 5 cut(s) 239, 442, 522, 589, 892
Sau96I GGNCC 4 cut(s) 4, 163, 267, 316
SchI GAGTC 3 cut(s) 169, 473, 1166
ScrFI CCNGG 1 cut(s) 897
SduI GDGCHC 2 cut(s) 23, 421
SfaNI GCATC 2 cut(s) 285, 1096
SfcI CTRYAG 1 cut(s) 485
SfoI GGCGCC 1 cut(s) 307
Sfr303I CCGCGG 1 cut(s) 315
SgrAI CRCCGGYG 1 cut(s) 284
SgrBI CCGCGG 1 cut(s) 315
SmiMI CAYNNNNRTG 2 cut(s) 708, 887
SmlI CTYRAG 1 cut(s) 613
SmoI CTYRAG 1 cut(s) 613
Sse9I AATT 7 cut(s) 93, 102, 149, 396, 534, 607, 806
SsiI CCGC 6 cut(s) 245, 309, 312, 314, 330, 647
SspDI GGCGCC 1 cut(s) 305
SspMI CTAG 1 cut(s) 567
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 895
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 4 cut(s) 141, 388, 742, 1081
TaiI ACGT 3 cut(s) 563, 578, 876
TaqI TCGA 8 cut(s) 73, 218, 263, 435, 461, 521, 665, 706
TasI AATT 7 cut(s) 93, 102, 149, 396, 534, 607, 806
TatI WGTACW 2 cut(s) 136, 1133
TauI GCSGC 3 cut(s) 311, 314, 317
TfiI GAWTC 4 cut(s) 463, 570, 667, 1002
Tru1I TTAA 5 cut(s) 399, 474, 537, 729, 767
Tru9I TTAA 5 cut(s) 399, 474, 537, 729, 767
TscAI CASTG 2 cut(s) 497, 1084
TseFI GTSAC 4 cut(s) 688, 869, 987, 1158
TseI GCWGC 1 cut(s) 1022
Tsp45I GTSAC 4 cut(s) 688, 869, 987, 1158
TspDTI ATGAA 3 cut(s) 131, 827, 1089
TspGWI ACGGA 2 cut(s) 249, 868
TspRI CASTG 2 cut(s) 497, 1084
VneI GTGCAC 1 cut(s) 417
XapI RAATTY 2 cut(s) 102, 149
XbaI TCTAGA 1 cut(s) 566
XmnI GAANNNNTTC 3 cut(s) 431, 755, 1006
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.