Rroxscaffold_2G00112660

Dehydrogenase reductase SDR family member on chromosome

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
37937656 .. 37944862
7207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00112660.1

Sequence Viewer

Length: 1098 bp
ATGAAGGAGGCATTGGAGTTTGTAGTGTCCATGGAATTCTGGAGAATGGGCCTGCGATGGACTCTCAGTCTTCTCATCTCTTACTGGCACCTCCTCTTCGCCTCAACTACTACTCCTCCTTCCAGATCACCGCCTCCCTCATCTCCGTCGAGGCCCGTCTGCATCATCACCGGCGCGACTTCTGGATTGGGCGCCGCGGCGGCCCATGCTCTCTCCGCTCGTGGCTTCTTTGTGGTTCTCGTTGGACGCTCATCTCTCTTGTTAGAGAAGACGATGATGGAAATTAAGAGGAAGAATGAGAGTGCACAGCTGAAAGCTTTCGAGGTTGATCTCTCATCATTCCATTCGATTCTTCAGTTTAAAGCCTCCCTACAGCAGTGGCTTTCTGACTCGCAAATGTACTCTTCGATCCAACTCCTGATTAACAATGCTGGAATACTTGCTACGTCGTCTAGATTCACCTCTGAAGGCTATGATCAGATGATGGCTACAAATTACTTGAGTGCATTTTTTCTTAGTAAACTATTGTTACCGCTTCTCAGAAACAGCTCGATTCCTTCCCGTATAGTGAATGTCACATCTTTCACACATCGAAGTGTATCGAATATACAGTTTGACAAGGATACTGTATCTGGGAAGTGCTTCAGCAGATTAAAAAGATACCCATATGCTCATGTATATGAGTATTCCAAATTGTTCCTACTGCTCTTCTCCTATGAGCTTCATCGCCAACTTGGCTTGATGGACATATCTCGTCACGTCTCCGTCATTGCTGTGGATCCTGGTGTTGTTGAAACCAACATCTTGCGAGAAGTTCCTCCATGCCTATCCAGTTTGGCCAATAAAGTTTTGAGAAGTCTTTGGTTCTTGCAGTCACCTGAAGTTGGAATCAGTTCCATTCTCGATGCAGCATTTGCTCCACCAGAAACATCTGGAGTTTACTTTTTTGGTGGAAAGGGCAACACTGTCAGCTCTTCTATGCTTTCATATGATGCCAAACTTGCACAGGAACTTTGGAGTGCATCGTCTGATCTATTTTTAGAGTCACAGCTTGCTTTCAAGGAAACCTCCACTTCTGTATCAAACTTTGTATCATAG
Functional Annotation

Protein Analysis

365

Amino Acids

40.53

Weight (kDa)

9.02

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 53 - 196 1.3e-22 short chain dehydrogenase
adh_short_C2 PF13561 58 - 200 1.6e-12 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 87, 191
AccBSI CCGCTC 1 cut(s) 218
AccII CGCG 2 cut(s) 176, 197
AciI CCGC 6 cut(s) 131, 195, 197, 200, 216, 533
AclWI GGATC 3 cut(s) 403, 773, 786
AcoI YGGCCR 1 cut(s) 837
AcsI RAATTY 1 cut(s) 35
AcuI CTGAAG 4 cut(s) 338, 486, 628, 900
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 884
AgsI TTSAA 2 cut(s) 794, 1060
AhdI GACNNNNNGTC 1 cut(s) 66
AjiI CACGTC 1 cut(s) 760
AjnI CCWGG 1 cut(s) 781
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 6 cut(s) 310, 317, 549, 721, 972, 1051
AluI AGCT 6 cut(s) 310, 317, 549, 721, 972, 1051
Alw21I GWGCWC 1 cut(s) 307
Alw26I GTCTC 1 cut(s) 766
Alw44I GTGCAC 1 cut(s) 303
AlwI GGATC 3 cut(s) 403, 773, 786
AoxI GGCC 4 cut(s) 49, 152, 201, 837
ApaLI GTGCAC 1 cut(s) 303
ApeKI GCWGC 1 cut(s) 908
ApoI RAATTY 1 cut(s) 35
Asp700I GAANNNNTTC 3 cut(s) 317, 641, 892
AspLEI GCGC 2 cut(s) 176, 194
AspS9I GGNCC 3 cut(s) 49, 153, 202
AsuHPI GGTGA 4 cut(s) 120, 160, 451, 867
BaeGI GKGCMC 1 cut(s) 307
BaeI ACNNNNGTAYC 2 cut(s) 1062, 1095
BalI TGGCCA 1 cut(s) 839
BamHI GGATCC 1 cut(s) 778
BanI GGYRCC 2 cut(s) 87, 191
BauI CACGAG 1 cut(s) 219
BbsI GAAGAC 2 cut(s) 62, 275
Bbv12I GWGCWC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 920
BccI CCATC 4 cut(s) 51, 271, 478, 736
BciT130I CCWGG 1 cut(s) 783
BciVI GTATCC 1 cut(s) 616
BclI TGATCA 1 cut(s) 475
BcoDI GTCTC 1 cut(s) 766
BfaI CTAG 1 cut(s) 453
BfmI CTRYAG 1 cut(s) 371
BfoI RGCGCY 1 cut(s) 195
BfuI GTATCC 1 cut(s) 616
BglI GCCNNNNNGGC 2 cut(s) 200, 735
BisI GCNGC 4 cut(s) 195, 198, 201, 909
BlsI GCNGC 4 cut(s) 196, 199, 202, 910
Bme1390I CCNGG 1 cut(s) 783
BmeRI GACNNNNNGTC 1 cut(s) 66
BmgBI CACGTC 1 cut(s) 760
BmgT120I GGNCC 3 cut(s) 49, 153, 202
BmiI GGNNCC 3 cut(s) 89, 193, 780
BmrFI CCNGG 1 cut(s) 783
BmsI GCATC 4 cut(s) 171, 895, 982, 1031
BpiI GAAGAC 2 cut(s) 62, 275
BpmI CTGGAG 2 cut(s) 61, 954
BpuEI CTTGAG 1 cut(s) 520
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 30, 195
BsaXI ACNNNNNCTCC 4 cut(s) 97, 100, 127, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 884
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 2 cut(s) 89, 831
Bse3DI GCAATG 1 cut(s) 768
BseBI CCWGG 1 cut(s) 783
BseDI CCNNGG 2 cut(s) 30, 195
BseLI CCNNNNNNNGG 1 cut(s) 884
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 2 cut(s) 79, 553
BseNI ACTGG 2 cut(s) 89, 831
BseRI GAGGAG 2 cut(s) 83, 105
BseSI GKGCMC 1 cut(s) 307
BseXI GCAGC 1 cut(s) 920
Bsh1236I CGCG 2 cut(s) 176, 197
BshFI GGCC 4 cut(s) 51, 154, 203, 839
BshNI GGYRCC 2 cut(s) 87, 191
BsiHKAI GWGCWC 1 cut(s) 307
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 884
BsmAI GTCTC 1 cut(s) 766
BsmBI CGTCTC 1 cut(s) 766
BsnI GGCC 4 cut(s) 51, 154, 203, 839
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 6 cut(s) 125, 328, 408, 475, 778, 1030
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 6 cut(s) 131, 195, 197, 200, 216, 533
BspANI GGCC 4 cut(s) 51, 154, 203, 839
BspCNI CTCAG 2 cut(s) 78, 552
BspFNI CGCG 2 cut(s) 176, 197
BspLI GGNNCC 3 cut(s) 89, 193, 780
BspPI GGATC 3 cut(s) 403, 773, 786
BspQI GCTCTTC 2 cut(s) 713, 979
BspT107I GGYRCC 2 cut(s) 87, 191
BsrBI CCGCTC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 768
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 2 cut(s) 89, 831
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 30, 195
BssMI GATC 6 cut(s) 125, 328, 408, 475, 778, 1030
BssNI GRCGYC 1 cut(s) 192
BssSI CACGAG 1 cut(s) 219
BssT1I CCWWGG 1 cut(s) 30
Bst2BI CACGAG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 783
Bst4CI ACNGT 3 cut(s) 612, 628, 967
Bst6I CTCTTC 4 cut(s) 101, 409, 713, 979
BstACI GRCGYC 1 cut(s) 192
BstAPI GCANNNNNTGC 1 cut(s) 914
BstC8I GCNNGC 2 cut(s) 53, 1053
BstDEI CTNAG 3 cut(s) 65, 515, 539
BstDSI CCRYGG 2 cut(s) 30, 195
BstFNI CGCG 2 cut(s) 176, 197
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 2 cut(s) 176, 194
BstKTI GATC 6 cut(s) 128, 331, 411, 478, 781, 1033
BstMAI GTCTC 1 cut(s) 766
BstMBI GATC 6 cut(s) 125, 328, 408, 475, 778, 1030
BstMWI GCNNNNNNNGC 6 cut(s) 200, 206, 215, 735, 914, 1001
BstNI CCWGG 1 cut(s) 783
BstSCI CCNGG 1 cut(s) 781
BstSFI CTRYAG 1 cut(s) 371
BstSLI GKGCMC 1 cut(s) 307
BstUI CGCG 2 cut(s) 176, 197
BstV1I GCAGC 1 cut(s) 920
BstV2I GAAGAC 2 cut(s) 62, 275
BstX2I RGATCY 1 cut(s) 778
BstYI RGATCY 1 cut(s) 778
BsuI GTATCC 1 cut(s) 616
BsuRI GGCC 4 cut(s) 51, 154, 203, 839
BtgI CCRYGG 2 cut(s) 30, 195
BtgZI GCGATG 2 cut(s) 70, 710
BtrI CACGTC 1 cut(s) 760
BtsI GCAGTG 1 cut(s) 383
BtsIMutI CAGTG 2 cut(s) 383, 963
Cac8I GCNNGC 2 cut(s) 53, 1053
CfoI GCGC 2 cut(s) 176, 194
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 3 cut(s) 49, 153, 202
Cfr42I CCGCGG 1 cut(s) 198
CseI GACGC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 400
CviAII CATG 4 cut(s) 31, 206, 674, 822
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 3 cut(s) 65, 515, 539
DinI GGCGCC 1 cut(s) 193
DpnI GATC 6 cut(s) 127, 330, 410, 477, 780, 1032
DpnII GATC 6 cut(s) 125, 328, 408, 475, 778, 1030
DraI TTTAAA 1 cut(s) 361
DriI GACNNNNNGTC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 837
Eam1104I CTCTTC 4 cut(s) 101, 409, 713, 979
Eam1105I GACNNNNNGTC 1 cut(s) 66
EarI CTCTTC 4 cut(s) 101, 409, 713, 979
Eco130I CCWWGG 1 cut(s) 30
Eco57I CTGAAG 4 cut(s) 338, 486, 628, 900
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 781
EcoT14I CCWWGG 1 cut(s) 30
EgeI GGCGCC 1 cut(s) 193
EheI GGCGCC 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 766
FaeI CATG 4 cut(s) 34, 209, 677, 825
FatI CATG 4 cut(s) 30, 205, 673, 821
FauNDI CATATG 2 cut(s) 667, 988
FbaI TGATCA 1 cut(s) 475
Fnu4HI GCNGC 4 cut(s) 195, 198, 201, 909
Fsp4HI GCNGC 4 cut(s) 195, 198, 201, 909
FspBI CTAG 1 cut(s) 453
GlaI GCGC 2 cut(s) 175, 193
GluI GCNGC 4 cut(s) 195, 198, 201, 909
GsuI CTGGAG 2 cut(s) 61, 954
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 4 cut(s) 51, 154, 203, 839
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 255
HhaI GCGC 2 cut(s) 176, 194
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 4 cut(s) 34, 209, 677, 825
Hin6I GCGC 2 cut(s) 174, 192
HinP1I GCGC 2 cut(s) 174, 192
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 7 cut(s) 61, 349, 389, 456, 553, 888, 1043
HpaII CCGG 1 cut(s) 171
HphI GGTGA 4 cut(s) 120, 160, 451, 867
Hpy166II GTNNAC 3 cut(s) 305, 521, 940
Hpy188I TCNGA 5 cut(s) 388, 466, 480, 542, 1030
Hpy188III TCNNGA 7 cut(s) 40, 123, 183, 418, 453, 902, 933
Hpy8I GTNNAC 3 cut(s) 305, 521, 940
Hpy99I CGWCG 2 cut(s) 151, 451
HpyAV CCTTC 3 cut(s) 129, 461, 567
HpyCH4III ACNGT 3 cut(s) 612, 628, 967
HpyCH4IV ACGT 2 cut(s) 446, 759
HpyCH4V TGCA 7 cut(s) 162, 305, 506, 871, 908, 1004, 1022
HpyF10VI GCNNNNNNNGC 6 cut(s) 200, 206, 215, 735, 914, 1001
HpyF3I CTNAG 3 cut(s) 65, 515, 539
HpySE526I ACGT 2 cut(s) 446, 759
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 4 cut(s) 34, 209, 677, 825
HspAI GCGC 2 cut(s) 174, 192
KasI GGCGCC 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 475
KspI CCGCGG 1 cut(s) 198
Kzo9I GATC 6 cut(s) 125, 328, 408, 475, 778, 1030
LguI GCTCTTC 2 cut(s) 713, 979
LmnI GCTCC 1 cut(s) 922
Lsp1109I GCAGC 1 cut(s) 920
LweI GCATC 4 cut(s) 171, 895, 982, 1031
MaeI CTAG 1 cut(s) 453
MaeII ACGT 2 cut(s) 446, 759
MaeIII GTNAC 5 cut(s) 528, 574, 755, 873, 1044
MalI GATC 6 cut(s) 127, 330, 410, 477, 780, 1032
MbiI CCGCTC 1 cut(s) 218
MboI GATC 6 cut(s) 125, 328, 408, 475, 778, 1030
MboII GAAGA 8 cut(s) 62, 88, 280, 304, 344, 396, 700, 966
MflI RGATCY 1 cut(s) 778
MhlI GDGCHC 1 cut(s) 307
MlsI TGGCCA 1 cut(s) 839
MluCI AATT 4 cut(s) 35, 282, 493, 692
MluNI TGGCCA 1 cut(s) 839
Mly113I GGCGCC 1 cut(s) 192
MlyI GAGTC 3 cut(s) 55, 383, 1052
MmeI TCCRAC 3 cut(s) 223, 436, 865
Mox20I TGGCCA 1 cut(s) 839
MroXI GAANNNNTTC 3 cut(s) 317, 641, 892
MscI TGGCCA 1 cut(s) 839
MseI TTAA 4 cut(s) 285, 360, 423, 653
MslI CAYNNNNRTG 3 cut(s) 594, 678, 773
Msp20I TGGCCA 1 cut(s) 839
MspA1I CMGCKG 2 cut(s) 197, 310
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 783
MvaI CCWGG 1 cut(s) 783
MvnI CGCG 2 cut(s) 176, 197
MwoI GCNNNNNNNGC 6 cut(s) 200, 206, 215, 735, 914, 1001
NarI GGCGCC 1 cut(s) 192
NcoI CCATGG 1 cut(s) 30
NdeI CATATG 2 cut(s) 667, 988
NdeII GATC 6 cut(s) 125, 328, 408, 475, 778, 1030
NlaIII CATG 4 cut(s) 34, 209, 677, 825
NlaIV GGNNCC 3 cut(s) 89, 193, 780
NmuCI GTSAC 4 cut(s) 574, 755, 873, 1044
PciSI GCTCTTC 2 cut(s) 713, 979
PdmI GAANNNNTTC 3 cut(s) 317, 641, 892
PfeI GAWTC 4 cut(s) 349, 456, 553, 888
PkrI GCNGC 4 cut(s) 196, 199, 202, 910
PleI GAGTC 3 cut(s) 55, 383, 1051
PluTI GGCGCC 1 cut(s) 195
PpsI GAGTC 3 cut(s) 55, 383, 1051
Psp6I CCWGG 1 cut(s) 781
PspGI CCWGG 1 cut(s) 781
PspN4I GGNNCC 3 cut(s) 89, 193, 780
PspPI GGNCC 3 cut(s) 49, 153, 202
PsuI RGATCY 1 cut(s) 778
PvuII CAGCTG 1 cut(s) 310
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
RseI CAYNNNNRTG 3 cut(s) 594, 678, 773
SacII CCGCGG 1 cut(s) 198
SapI GCTCTTC 2 cut(s) 713, 979
SaqAI TTAA 4 cut(s) 285, 360, 423, 653
SatI GCNGC 4 cut(s) 195, 198, 201, 909
Sau3AI GATC 6 cut(s) 125, 328, 408, 475, 778, 1030
Sau96I GGNCC 3 cut(s) 49, 153, 202
SchI GAGTC 3 cut(s) 55, 383, 1052
ScrFI CCNGG 1 cut(s) 783
SduI GDGCHC 1 cut(s) 307
SfaNI GCATC 4 cut(s) 171, 895, 982, 1031
SfcI CTRYAG 1 cut(s) 371
SfoI GGCGCC 1 cut(s) 193
Sfr303I CCGCGG 1 cut(s) 198
SgrAI CRCCGGYG 1 cut(s) 170
SgrBI CCGCGG 1 cut(s) 198
SmiMI CAYNNNNRTG 3 cut(s) 594, 678, 773
SmlI CTYRAG 1 cut(s) 499
SmoI CTYRAG 1 cut(s) 499
Sse9I AATT 4 cut(s) 35, 282, 493, 692
SsiI CCGC 6 cut(s) 131, 195, 197, 200, 216, 533
SspDI GGCGCC 1 cut(s) 191
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 781
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 3 cut(s) 612, 628, 967
TaiI ACGT 2 cut(s) 449, 762
TaqI TCGA 8 cut(s) 149, 321, 347, 407, 551, 592, 602, 903
TasI AATT 4 cut(s) 35, 282, 493, 692
TatI WGTACW 1 cut(s) 399
TauI GCSGC 3 cut(s) 197, 200, 203
TfiI GAWTC 4 cut(s) 349, 456, 553, 888
Tru1I TTAA 4 cut(s) 285, 360, 423, 653
Tru9I TTAA 4 cut(s) 285, 360, 423, 653
TscAI CASTG 2 cut(s) 383, 970
TseFI GTSAC 4 cut(s) 574, 755, 873, 1044
TseI GCWGC 1 cut(s) 908
Tsp45I GTSAC 4 cut(s) 574, 755, 873, 1044
TspDTI ATGAA 3 cut(s) 17, 713, 975
TspGWI ACGGA 2 cut(s) 135, 754
TspRI CASTG 2 cut(s) 383, 970
VneI GTGCAC 1 cut(s) 303
XapI RAATTY 1 cut(s) 35
XbaI TCTAGA 1 cut(s) 452
XmnI GAANNNNTTC 3 cut(s) 317, 641, 892
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.