Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003848

Physical Location & Seq

Genomic Coordinates Reverse (-)

45854976 .. 45863327

Gene Structure 8352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGCCTGCGATGGACTCTCAGTCTTCTCATCTCTTACTGGCACCTCCTCTTCGCCTCGACTACTACTCCTCCTTCCAGATCACCGCCTCCCTCATCTCCGTCGAGGCCCGTCTGCATCATCACCGGTGCGACTTCTGGATTGGGCGCCGCCGCGGCTCATGCTCTCTCCGCTAGTGGCTTCTTTGTGGTTCTCGTTGGACGCTCATCTCGCTTGTTAGAACAGACGATGATGAAAATTAAGAGGAAGAATGAGAGTGCACAGCTGAAAGCTTTCGAGGCTGATCTCTCATCATTCCAGTCGATTCTTCGGTTTAAAGCCTCCCTACAGCAGTGGCTTTCCGACTCGCAAATGCACTCTTCGATCCAACTCCTAATTAACAATGCTGGAATACTTGCTACGTCGTCTAGATTCACGTCTGAAGGCTATGATCAGATGATGGCTACAAATTACTTGAGTGCATTTTTTCTTAGTAAACTATTGTTACCGCTTCTCAGAAACTGCTCGATTCCTTCCCGTATAGTGAATGTCACATCTTTCACACATCGAAGTGTATCAAATATACAGGTTGACAAGGAGACTGTATCTGGGAAGTGCTTCAGCAGATTAAAAAGATACCCATATGCTCTTGTATATGAGTATTCCAAATTGTTCCTACTGCTCTTCTCCTATGAGCTTCATCGCCAACTTGGCTTGATGGACATATCTCGTCACGTCTCCGTCATTGCTGTGGATCCTGGTGTTGTTGAAACCAACATCTTGCGAGAAGTTCCTCCATGCCTATCCAGTTTGGCTGCTCGGTCTAACTTTGGTGAGGAACCACTTGGCCCAAGGCCTAATTTCGGACTATTGGGTTTTCTTCTCTCCTATGTCCACTTCAGGAAAAAGATGAGGGCTCCCTCCAGGAAGCTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

305

Amino Acids

33.99

Weight (kDa)

10.01

Isoelectric Point (pI)

52.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	38 - 181	2.1e-22	short chain dehydrogenase
adh_short_C2	PF13561	43 - 185	1.2e-12	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04070 AT5G15940 AT5G15940 AT5G15940 AT5G15940
fragaria_vesca	FvH4_6g28040 FvH4_6g28040
malus_domestica	MD15G1141600.v1.1
prunus_persica	Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1
pyrus_communis	pycom15g12790
rosa_chinensis	RchiOBHm_Chr2g0131741 RchiOBHm_Chr5g0041951 RchiOBHm_Chr6g0247031
rosa_laevigata	RLG00000015229 RLG00000019207
rosa_multiflora	Rmu_sc0006001.1_g000002 Rmu_sc0009880.1_g000012
rosa_roxburghii	Rroxscaffold_1G00038630 Rroxscaffold_2G00112660
rosa_rugosa	Rorug05G0197200 Rorug07G0258400
rosa_samantha	Rh2AG351900 Rh2BG359000 Rh5AG282000 Rh5BG287700 Rh5DG296500 Rh6BG031500
rosa_wichuraiana	Rw0G001410 Rw2G028590 Rw2G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	42, 146
AccII	CGCG	1 cut(s)	155
AciI	CCGC	6 cut(s)	86, 150, 153, 155, 171, 488
AclWI	GGATC	3 cut(s)	358, 728, 741
AcuI	CTGAAG	3 cut(s)	441, 583, 862
AcyI	GRCGYC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	842
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	749
AhdI	GACNNNNNGTC	1 cut(s)	21
AjiI	CACGTC	2 cut(s)	417, 715
AjnI	CCWGG	2 cut(s)	736, 902
AluBI	AGCT	4 cut(s)	265, 272, 676, 910
AluI	AGCT	4 cut(s)	265, 272, 676, 910
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	2 cut(s)	572, 721
Alw44I	GTGCAC	1 cut(s)	258
AlwI	GGATC	3 cut(s)	358, 728, 741
AlwNI	CAGNNNCTG	1 cut(s)	501
AoxI	GGCC	4 cut(s)	4, 107, 826, 833
ApaLI	GTGCAC	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	794
AsiGI	ACCGGT	1 cut(s)	125
Asp700I	GAANNNNTTC	2 cut(s)	272, 596
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	3 cut(s)	4, 108, 827
AsuHPI	GGTGA	3 cut(s)	75, 115, 824
BaeGI	GKGCMC	1 cut(s)	262
BamHI	GGATCC	1 cut(s)	733
BanI	GGYRCC	2 cut(s)	42, 146
BanII	GRGCYC	1 cut(s)	898
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	781
BccI	CCATC	3 cut(s)	6, 433, 691
BciT130I	CCWGG	2 cut(s)	738, 904
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	572, 721
BfaI	CTAG	3 cut(s)	174, 408, 911
BfmI	CTRYAG	1 cut(s)	326
BfoI	RGCGCY	1 cut(s)	150
BglI	GCCNNNNNGGC	2 cut(s)	155, 690
BisI	GCNGC	4 cut(s)	150, 153, 156, 795
BlsI	GCNGC	4 cut(s)	151, 154, 157, 796
Bme1390I	CCNGG	2 cut(s)	738, 904
BmeRI	GACNNNNNGTC	1 cut(s)	21
BmgBI	CACGTC	2 cut(s)	417, 715
BmgT120I	GGNCC	3 cut(s)	4, 108, 827
BmiI	GGNNCC	5 cut(s)	44, 148, 735, 819, 897
BmrFI	CCNGG	2 cut(s)	738, 904
BmsI	GCATC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	886
BpuEI	CTTGAG	1 cut(s)	475
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	153, 830
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	4 cut(s)	52, 55, 82, 85
Bsc4I	CCNNNNNNNGG	1 cut(s)	842
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	3 cut(s)	44, 298, 786
Bse3DI	GCAATG	1 cut(s)	723
BseBI	CCWGG	2 cut(s)	738, 904
BseDI	CCNNGG	2 cut(s)	153, 830
BseLI	CCNNNNNNNGG	1 cut(s)	842
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	2 cut(s)	34, 508
BseNI	ACTGG	3 cut(s)	44, 298, 786
BseRI	GAGGAG	2 cut(s)	38, 60
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	781
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	4 cut(s)	6, 109, 828, 835
BshNI	GGYRCC	2 cut(s)	42, 146
BshTI	ACCGGT	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	842
BsmAI	GTCTC	2 cut(s)	572, 721
BsmBI	CGTCTC	1 cut(s)	721
BsnI	GGCC	4 cut(s)	6, 109, 828, 835
Bsp1286I	GDGCHC	2 cut(s)	262, 898
Bsp143I	GATC	5 cut(s)	80, 283, 363, 430, 733
BspACI	CCGC	6 cut(s)	86, 150, 153, 155, 171, 488
BspANI	GGCC	4 cut(s)	6, 109, 828, 835
BspCNI	CTCAG	2 cut(s)	33, 507
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	5 cut(s)	44, 148, 735, 819, 897
BspPI	GGATC	3 cut(s)	358, 728, 741
BspQI	GCTCTTC	1 cut(s)	668
BspT107I	GGYRCC	2 cut(s)	42, 146
BsrDI	GCAATG	1 cut(s)	723
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	3 cut(s)	44, 298, 786
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	153, 830
BssMI	GATC	5 cut(s)	80, 283, 363, 430, 733
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	830
Bst2UI	CCWGG	2 cut(s)	738, 904
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	3 cut(s)	56, 364, 668
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	3 cut(s)	20, 470, 494
BstDSI	CCRYGG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	155
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	5 cut(s)	83, 286, 366, 433, 736
BstMAI	GTCTC	2 cut(s)	572, 721
BstMBI	GATC	5 cut(s)	80, 283, 363, 430, 733
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 161, 170, 210, 278, 690
BstNI	CCWGG	2 cut(s)	738, 904
BstSCI	CCNGG	2 cut(s)	736, 902
BstSFI	CTRYAG	1 cut(s)	326
BstSLI	GKGCMC	1 cut(s)	262
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	781
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	733
BstYI	RGATCY	1 cut(s)	733
BsuRI	GGCC	4 cut(s)	6, 109, 828, 835
BtgI	CCRYGG	1 cut(s)	153
BtgZI	GCGATG	2 cut(s)	25, 665
BtrI	CACGTC	2 cut(s)	417, 715
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	8
CaiI	CAGNNNCTG	1 cut(s)	501
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	3 cut(s)	4, 108, 827
Cfr42I	CCGCGG	1 cut(s)	156
CseI	GACGC	1 cut(s)	210
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	2 cut(s)	161, 777
DdeI	CTNAG	3 cut(s)	20, 470, 494
DinI	GGCGCC	1 cut(s)	148
DpnI	GATC	5 cut(s)	82, 285, 365, 432, 735
DpnII	GATC	5 cut(s)	80, 283, 363, 430, 733
DraI	TTTAAA	1 cut(s)	316
DriI	GACNNNNNGTC	1 cut(s)	21
Eam1104I	CTCTTC	3 cut(s)	56, 364, 668
Eam1105I	GACNNNNNGTC	1 cut(s)	21
EarI	CTCTTC	3 cut(s)	56, 364, 668
Eco130I	CCWWGG	1 cut(s)	830
Eco147I	AGGCCT	1 cut(s)	835
Eco24I	GRGCYC	1 cut(s)	898
Eco57I	CTGAAG	3 cut(s)	441, 583, 862
EcoRII	CCWGG	2 cut(s)	736, 902
EcoT14I	CCWWGG	1 cut(s)	830
EcoT38I	GRGCYC	1 cut(s)	898
EgeI	GGCGCC	1 cut(s)	148
EheI	GGCGCC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	830
Esp3I	CGTCTC	1 cut(s)	721
FaeI	CATG	2 cut(s)	164, 780
FatI	CATG	2 cut(s)	160, 776
FauNDI	CATATG	1 cut(s)	622
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	4 cut(s)	150, 153, 156, 795
FriOI	GRGCYC	1 cut(s)	898
Fsp4HI	GCNGC	4 cut(s)	150, 153, 156, 795
FspBI	CTAG	3 cut(s)	174, 408, 911
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	4 cut(s)	150, 153, 156, 795
GsuI	CTGGAG	1 cut(s)	886
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	4 cut(s)	6, 109, 828, 835
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	164, 780
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	5 cut(s)	16, 304, 344, 411, 508
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	3 cut(s)	75, 115, 824
Hpy166II	GTNNAC	4 cut(s)	260, 476, 571, 874
Hpy188I	TCNGA	5 cut(s)	343, 421, 435, 497, 845
Hpy188III	TCNNGA	4 cut(s)	78, 138, 408, 880
Hpy8I	GTNNAC	4 cut(s)	260, 476, 571, 874
Hpy99I	CGWCG	2 cut(s)	106, 406
HpyAV	CCTTC	3 cut(s)	84, 416, 522
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	3 cut(s)	401, 416, 714
HpyCH4V	TGCA	4 cut(s)	117, 260, 355, 461
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 161, 170, 210, 278, 690
HpyF3I	CTNAG	3 cut(s)	20, 470, 494
HpySE526I	ACGT	3 cut(s)	401, 416, 714
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	164, 780
HspAI	GCGC	1 cut(s)	147
KasI	GGCGCC	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	430
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	5 cut(s)	80, 283, 363, 430, 733
LguI	GCTCTTC	1 cut(s)	668
LmnI	GCTCC	1 cut(s)	901
Lsp1109I	GCAGC	1 cut(s)	781
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	3 cut(s)	174, 408, 911
MaeII	ACGT	3 cut(s)	401, 416, 714
MaeIII	GTNAC	3 cut(s)	483, 529, 710
MalI	GATC	5 cut(s)	82, 285, 365, 432, 735
MboI	GATC	5 cut(s)	80, 283, 363, 430, 733
MboII	GAAGA	7 cut(s)	17, 43, 259, 299, 351, 655, 851
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	2 cut(s)	262, 898
MluCI	AATT	5 cut(s)	237, 375, 448, 647, 838
Mly113I	GGCGCC	1 cut(s)	147
MlyI	GAGTC	2 cut(s)	10, 338
MmeI	TCCRAC	3 cut(s)	178, 366, 391
MroXI	GAANNNNTTC	2 cut(s)	272, 596
MseI	TTAA	4 cut(s)	240, 315, 378, 608
MslI	CAYNNNNRTG	2 cut(s)	549, 728
MspA1I	CMGCKG	2 cut(s)	155, 265
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	738, 904
MvaI	CCWGG	2 cut(s)	738, 904
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	6 cut(s)	155, 161, 170, 210, 278, 690
NarI	GGCGCC	1 cut(s)	147
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	5 cut(s)	80, 283, 363, 430, 733
NlaIII	CATG	2 cut(s)	164, 780
NlaIV	GGNNCC	5 cut(s)	44, 148, 735, 819, 897
NmuCI	GTSAC	2 cut(s)	529, 710
PceI	AGGCCT	1 cut(s)	835
PciSI	GCTCTTC	1 cut(s)	668
PdmI	GAANNNNTTC	2 cut(s)	272, 596
PfeI	GAWTC	3 cut(s)	304, 411, 508
PfoI	TCCNGGA	1 cut(s)	902
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	4 cut(s)	151, 154, 157, 796
PleI	GAGTC	2 cut(s)	10, 338
PluTI	GGCGCC	1 cut(s)	150
PpsI	GAGTC	2 cut(s)	10, 338
Psp6I	CCWGG	2 cut(s)	736, 902
PspGI	CCWGG	2 cut(s)	736, 902
PspN4I	GGNNCC	5 cut(s)	44, 148, 735, 819, 897
PspPI	GGNCC	3 cut(s)	4, 108, 827
PstNI	CAGNNNCTG	1 cut(s)	501
PsuI	RGATCY	1 cut(s)	733
PvuII	CAGCTG	1 cut(s)	265
RseI	CAYNNNNRTG	2 cut(s)	549, 728
SacII	CCGCGG	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	668
SaqAI	TTAA	4 cut(s)	240, 315, 378, 608
SatI	GCNGC	4 cut(s)	150, 153, 156, 795
Sau3AI	GATC	5 cut(s)	80, 283, 363, 430, 733
Sau96I	GGNCC	3 cut(s)	4, 108, 827
SchI	GAGTC	2 cut(s)	10, 338
ScrFI	CCNGG	2 cut(s)	738, 904
SduI	GDGCHC	2 cut(s)	262, 898
SetI	ASST	9 cut(s)	48, 267, 274, 404, 419, 570, 678, 717, 912
SfaNI	GCATC	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	326
SfoI	GGCGCC	1 cut(s)	148
Sfr303I	CCGCGG	1 cut(s)	156
SgrAI	CRCCGGYG	1 cut(s)	125
SgrBI	CCGCGG	1 cut(s)	156
SmiMI	CAYNNNNRTG	2 cut(s)	549, 728
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	5 cut(s)	237, 375, 448, 647, 838
SseBI	AGGCCT	1 cut(s)	835
SsiI	CCGC	6 cut(s)	86, 150, 153, 155, 171, 488
SspDI	GGCGCC	1 cut(s)	146
SspMI	CTAG	3 cut(s)	174, 408, 911
StuI	AGGCCT	1 cut(s)	835
StyD4I	CCNGG	2 cut(s)	736, 902
StyI	CCWWGG	1 cut(s)	830
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	3 cut(s)	404, 419, 717
TaqI	TCGA	7 cut(s)	59, 104, 276, 302, 362, 506, 547
TaqII	GACCGA	1 cut(s)	789
TasI	AATT	5 cut(s)	237, 375, 448, 647, 838
TauI	GCSGC	3 cut(s)	152, 155, 158
TfiI	GAWTC	3 cut(s)	304, 411, 508
Tru1I	TTAA	4 cut(s)	240, 315, 378, 608
Tru9I	TTAA	4 cut(s)	240, 315, 378, 608
TscAI	CASTG	1 cut(s)	338
TseFI	GTSAC	2 cut(s)	529, 710
TseI	GCWGC	1 cut(s)	794
Tsp45I	GTSAC	2 cut(s)	529, 710
TspDTI	ATGAA	2 cut(s)	248, 668
TspGWI	ACGGA	2 cut(s)	90, 709
TspRI	CASTG	1 cut(s)	338
VneI	GTGCAC	1 cut(s)	258
XbaI	TCTAGA	1 cut(s)	407
XmnI	GAANNNNTTC	2 cut(s)	272, 596
XspI	CTAG	3 cut(s)	174, 408, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.