Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003848

Physical Location & Seq

Genomic Coordinates Reverse (-)

21568236 .. 21571612

Gene Structure 3377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGATGAAGGAGACCTTGGATTTTGTGATGTCCATGGAATTCTGGAGAATGGGCCTTCTATGGACTCTCAGTCTTCTCCTCTCTTACTGGAACCTCCTTTTCGCCTCGGCTCCTCCTCTTTCCAGATCACCACCTCAATCGACGAAACCCGTCTGCATCATCACCGGTGCTACTTCTGGACTGGGCGCCGCCGCCGCCCATGCTCTCTCTGCCCGCGGCTTCTTTGTTGTTCTTGTTGGACGCTCATCTCACTTGTTAGAAAAGACTATGATGGAAATTAAGAGGAAGAATGAGTGTGCGCAACTGAAAGCTTTCGAGGTTGATCTCTCATCATTCCAGTCGATTCTTCAGTTTAAAGACTCCCTACAGCAGTGGCTTTCCGACTCGCAAATGCACTGTTCTATCCAGCTCCTAATCAACAATGCTGGAATACTTGCTGCGTCATCTAGAGTCACCTCTGAAGGCTATGATCAGATGATGGCTACAAATTACTTGTGTGCATTTGCTCTTAGTAAGCTATTGTTACCACTTCTCAGAAACAGCTCAGTTCCTGCCCGTATAGTGAATGTCACATCTTTCACACATCGAAGTGTATCGAATATACAGGCTGACAAGGAGACTGTAACTGGGAAGCGCTTTAGCAGATCAAAGAGATACCCATTTGCTCATGTCTATGAGGATTCCAAATTATTCCTACTGCTCTTCTCCTATGAACTTCATCGGCAACTTGGCTTGATGGACATATCTCGTCACATCTCTGTCAATGCTGTGGATCCTGGTGTTGTTGAAACCAAGATGATGCGAGAATTTCCTCCATGCCTATCCAGTTTGGCTTTTAAAGTTTTGAGAAGTCTTTGCCTCTTGCAATCACCTGAGGTTGGAATTAGCTCCATTCTTGATGCGGCACTTGCTCCACCAGAAATATCTGGAGTTTACTTCTTCGGTGGAAAGGGCAACACTGTCAGATCGTCAATGCTTTCATATGATGTCAAACTTGCAAAGGAACTTTGGAATACATCGTCTGATCTATTTTTACAGTCAAAACTTTATTTCAAGGAAACCTCCACTTCTGTATCAAACTTTGTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

364

Amino Acids

40.42

Weight (kDa)

9.15

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	51 - 194	2.3e-21	short chain dehydrogenase
adh_short_C2	PF13561	56 - 198	1.5e-12	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04070 AT5G15940 AT5G15940 AT5G15940 AT5G15940
fragaria_vesca	FvH4_6g28040 FvH4_6g28040
malus_domestica	MD15G1141600.v1.1
prunus_persica	Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1
pyrus_communis	pycom15g12790
rosa_chinensis	RchiOBHm_Chr2g0131741 RchiOBHm_Chr5g0041951 RchiOBHm_Chr6g0247031
rosa_laevigata	RLG00000015229 RLG00000019207
rosa_multiflora	Rmu_sc0006001.1_g000002 Rmu_sc0009880.1_g000012
rosa_roxburghii	Rroxscaffold_1G00038630 Rroxscaffold_2G00112660
rosa_rugosa	Rorug05G0197200 Rorug07G0258400
rosa_samantha	Rh2AG351900 Rh2BG359000 Rh5AG282000 Rh5BG287700 Rh5DG296500 Rh6BG031500
rosa_wichuraiana	Rw0G001410 Rw2G028590 Rw2G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	185
AccII	CGCG	1 cut(s)	216
AciI	CCGC	6 cut(s)	189, 192, 195, 214, 216, 902
AclWI	GGATC	2 cut(s)	767, 780
AcsI	RAATTY	2 cut(s)	38, 806
AcuI	CTGAAG	2 cut(s)	332, 480
AcyI	GRCGYC	1 cut(s)	186
AfeI	AGCGCT	1 cut(s)	635
AfiI	CCNNNNNNNGG	1 cut(s)	878
AgeI	ACCGGT	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	788, 1054
AhdI	GACNNNNNGTC	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	775
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	5 cut(s)	311, 409, 517, 543, 888
AluI	AGCT	5 cut(s)	311, 409, 517, 543, 888
Alw26I	GTCTC	2 cut(s)	5, 611
AlwI	GGATC	2 cut(s)	767, 780
AlwNI	CAGNNNCTG	1 cut(s)	551
Aor51HI	AGCGCT	1 cut(s)	635
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	2 cut(s)	38, 806
AsiGI	ACCGGT	1 cut(s)	164
Asp700I	GAANNNNTTC	1 cut(s)	311
AspLEI	GCGC	3 cut(s)	188, 301, 636
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	4 cut(s)	120, 154, 445, 861
AxyI	CCTNAGG	1 cut(s)	873
BaeI	ACNNNNGTAYC	2 cut(s)	1056, 1089
BamHI	GGATCC	1 cut(s)	772
BanI	GGYRCC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	3 cut(s)	265, 472, 730
BciT130I	CCWGG	1 cut(s)	777
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	5, 611
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	365
BfoI	RGCGCY	2 cut(s)	189, 637
BisI	GCNGC	6 cut(s)	189, 192, 195, 217, 438, 903
BlsI	GCNGC	6 cut(s)	190, 193, 196, 218, 439, 904
Bme1390I	CCNGG	1 cut(s)	777
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	4 cut(s)	92, 111, 187, 774
BmrFI	CCNGG	1 cut(s)	777
BmrI	ACTGGG	2 cut(s)	191, 636
BmsI	GCATC	3 cut(s)	165, 789, 889
BmuI	ACTGGG	2 cut(s)	191, 636
BpiI	GAAGAC	1 cut(s)	65
BpmI	CTGGAG	2 cut(s)	64, 948
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	15, 33, 105, 214
BsaWI	WCCGGW	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	878
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	5 cut(s)	92, 186, 337, 631, 825
Bse21I	CCTNAGG	1 cut(s)	873
BseBI	CCWGG	1 cut(s)	777
BseDI	CCNNGG	4 cut(s)	15, 33, 105, 214
BseLI	CCNNNNNNNGG	1 cut(s)	878
BseMII	CTCAG	4 cut(s)	82, 547, 558, 864
BseNI	ACTGG	5 cut(s)	92, 186, 337, 631, 825
BseRI	GAGGAG	3 cut(s)	68, 102, 105
BseXI	GCAGC	1 cut(s)	424
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	185
BshTI	ACCGGT	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	878
BsmAI	GTCTC	2 cut(s)	5, 611
BsnI	GGCC	1 cut(s)	54
Bso31I	GGTCTC	1 cut(s)	5
Bsp143I	GATC	7 cut(s)	125, 322, 469, 644, 772, 965, 1024
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	6 cut(s)	189, 192, 195, 214, 216, 902
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	4 cut(s)	81, 546, 557, 865
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	4 cut(s)	92, 111, 187, 774
BspPI	GGATC	2 cut(s)	767, 780
BspQI	GCTCTTC	1 cut(s)	707
BspT107I	GGYRCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	5
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	5 cut(s)	92, 186, 337, 631, 825
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	4 cut(s)	15, 33, 105, 214
BssMI	GATC	7 cut(s)	125, 322, 469, 644, 772, 965, 1024
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	15, 33
Bst2UI	CCWGG	1 cut(s)	777
Bst4CI	ACNGT	4 cut(s)	398, 622, 961, 1038
Bst6I	CTCTTC	1 cut(s)	707
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	5 cut(s)	68, 509, 533, 544, 873
BstDSI	CCRYGG	2 cut(s)	33, 214
BstFNI	CGCG	1 cut(s)	216
BstH2I	RGCGCY	2 cut(s)	189, 637
BstHHI	GCGC	3 cut(s)	188, 301, 636
BstKTI	GATC	7 cut(s)	128, 325, 472, 647, 775, 968, 1027
BstMAI	GTCTC	2 cut(s)	5, 611
BstMBI	GATC	7 cut(s)	125, 322, 469, 644, 772, 965, 1024
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 200, 209, 908
BstNI	CCWGG	1 cut(s)	777
BstSCI	CCNGG	1 cut(s)	775
BstSFI	CTRYAG	1 cut(s)	365
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	772
Bsu36I	CCTNAGG	1 cut(s)	873
BsuRI	GGCC	1 cut(s)	54
BtgI	CCRYGG	2 cut(s)	33, 214
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	3 cut(s)	377, 394, 957
Cac8I	GCNNGC	1 cut(s)	214
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	3 cut(s)	188, 301, 636
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	52
Cfr42I	CCGCGG	1 cut(s)	217
CseI	GACGC	2 cut(s)	249, 429
CspAI	ACCGGT	1 cut(s)	164
CviAII	CATG	4 cut(s)	34, 200, 668, 816
DdeI	CTNAG	5 cut(s)	68, 509, 533, 544, 873
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	7 cut(s)	127, 324, 471, 646, 774, 967, 1026
DpnII	GATC	7 cut(s)	125, 322, 469, 644, 772, 965, 1024
DraI	TTTAAA	2 cut(s)	355, 838
DriI	GACNNNNNGTC	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	707
Eam1105I	GACNNNNNGTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	707
Eco130I	CCWWGG	2 cut(s)	15, 33
Eco31I	GGTCTC	1 cut(s)	5
Eco47III	AGCGCT	1 cut(s)	635
Eco57I	CTGAAG	2 cut(s)	332, 480
Eco81I	CCTNAGG	1 cut(s)	873
EcoRI	GAATTC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	775
EcoT14I	CCWWGG	2 cut(s)	15, 33
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
ErhI	CCWWGG	2 cut(s)	15, 33
FaeI	CATG	4 cut(s)	37, 203, 671, 819
FalI	AAGNNNNNCTT	1 cut(s)	31
FatI	CATG	4 cut(s)	33, 199, 667, 815
FauI	CCCGC	1 cut(s)	221
FauNDI	CATATG	1 cut(s)	982
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	6 cut(s)	189, 192, 195, 217, 438, 903
Fsp4HI	GCNGC	6 cut(s)	189, 192, 195, 217, 438, 903
FspBI	CTAG	1 cut(s)	447
FspI	TGCGCA	1 cut(s)	300
GlaI	GCGC	3 cut(s)	187, 300, 635
GluI	GCNGC	6 cut(s)	189, 192, 195, 217, 438, 903
GsuI	CTGGAG	2 cut(s)	64, 948
HaeII	RGCGCY	2 cut(s)	189, 637
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	2 cut(s)	249, 429
HhaI	GCGC	3 cut(s)	188, 301, 636
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	4 cut(s)	37, 203, 671, 819
Hin6I	GCGC	3 cut(s)	186, 299, 634
HinP1I	GCGC	3 cut(s)	186, 299, 634
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	6 cut(s)	64, 343, 359, 383, 450, 680
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	4 cut(s)	120, 154, 445, 861
Hpy166II	GTNNAC	1 cut(s)	934
Hpy188I	TCNGA	6 cut(s)	382, 460, 474, 536, 965, 1024
Hpy188III	TCNNGA	6 cut(s)	43, 123, 177, 447, 896, 927
Hpy8I	GTNNAC	1 cut(s)	934
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	65, 455
HpyCH4III	ACNGT	4 cut(s)	398, 622, 961, 1038
HpyCH4V	TGCA	5 cut(s)	156, 394, 500, 865, 998
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 200, 209, 908
HpyF3I	CTNAG	5 cut(s)	68, 509, 533, 544, 873
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	37, 203, 671, 819
HspAI	GCGC	3 cut(s)	186, 299, 634
KasI	GGCGCC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	469
KspI	CCGCGG	1 cut(s)	217
Kzo9I	GATC	7 cut(s)	125, 322, 469, 644, 772, 965, 1024
LguI	GCTCTTC	1 cut(s)	707
LmnI	GCTCC	4 cut(s)	115, 414, 893, 916
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	3 cut(s)	165, 789, 889
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	5 cut(s)	451, 522, 568, 622, 749
MalI	GATC	7 cut(s)	127, 324, 471, 646, 774, 967, 1026
MboI	GATC	7 cut(s)	125, 322, 469, 644, 772, 965, 1024
MboII	GAAGA	5 cut(s)	65, 298, 338, 694, 931
MflI	RGATCY	1 cut(s)	772
MluCI	AATT	6 cut(s)	38, 276, 487, 686, 806, 882
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	4 cut(s)	58, 353, 377, 459
MmeI	TCCRAC	3 cut(s)	217, 405, 859
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	3 cut(s)	279, 354, 837
MslI	CAYNNNNRTG	2 cut(s)	588, 672
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	777
MvaI	CCWGG	1 cut(s)	777
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	4 cut(s)	194, 200, 209, 908
NarI	GGCGCC	1 cut(s)	186
NcoI	CCATGG	1 cut(s)	33
NdeI	CATATG	1 cut(s)	982
NdeII	GATC	7 cut(s)	125, 322, 469, 644, 772, 965, 1024
NlaIII	CATG	4 cut(s)	37, 203, 671, 819
NlaIV	GGNNCC	4 cut(s)	92, 111, 187, 774
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	3 cut(s)	451, 568, 749
NsbI	TGCGCA	1 cut(s)	300
PciSI	GCTCTTC	1 cut(s)	707
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	343, 680
PinAI	ACCGGT	1 cut(s)	164
PkrI	GCNGC	6 cut(s)	190, 193, 196, 218, 439, 904
PleI	GAGTC	4 cut(s)	58, 353, 377, 458
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	4 cut(s)	58, 353, 377, 458
Psp6I	CCWGG	1 cut(s)	775
PspGI	CCWGG	1 cut(s)	775
PspN4I	GGNNCC	4 cut(s)	92, 111, 187, 774
PspPI	GGNCC	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	772
RseI	CAYNNNNRTG	2 cut(s)	588, 672
SacII	CCGCGG	1 cut(s)	217
SapI	GCTCTTC	1 cut(s)	707
SaqAI	TTAA	3 cut(s)	279, 354, 837
SatI	GCNGC	6 cut(s)	189, 192, 195, 217, 438, 903
Sau3AI	GATC	7 cut(s)	125, 322, 469, 644, 772, 965, 1024
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	4 cut(s)	58, 353, 377, 459
ScrFI	CCNGG	1 cut(s)	777
SfaNI	GCATC	3 cut(s)	165, 789, 889
SfcI	CTRYAG	1 cut(s)	365
SfoI	GGCGCC	1 cut(s)	187
Sfr303I	CCGCGG	1 cut(s)	217
SgrAI	CRCCGGYG	1 cut(s)	164
SgrBI	CCGCGG	1 cut(s)	217
SmiMI	CAYNNNNRTG	2 cut(s)	588, 672
Sse9I	AATT	6 cut(s)	38, 276, 487, 686, 806, 882
SsiI	CCGC	6 cut(s)	189, 192, 195, 214, 216, 902
SspDI	GGCGCC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	1 cut(s)	775
StyI	CCWWGG	2 cut(s)	15, 33
TaaI	ACNGT	4 cut(s)	398, 622, 961, 1038
TaqI	TCGA	5 cut(s)	140, 315, 341, 586, 596
TasI	AATT	6 cut(s)	38, 276, 487, 686, 806, 882
TauI	GCSGC	5 cut(s)	191, 194, 197, 219, 905
TfiI	GAWTC	2 cut(s)	343, 680
Tru1I	TTAA	3 cut(s)	279, 354, 837
Tru9I	TTAA	3 cut(s)	279, 354, 837
TscAI	CASTG	3 cut(s)	377, 401, 964
TseFI	GTSAC	3 cut(s)	451, 568, 749
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	3 cut(s)	451, 568, 749
TspDTI	ATGAA	4 cut(s)	20, 707, 726, 969
TspRI	CASTG	3 cut(s)	377, 401, 964
XapI	RAATTY	2 cut(s)	38, 806
XbaI	TCTAGA	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.