Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003848

Physical Location & Seq

Genomic Coordinates Forward (+)

4780948 .. 4782903

Gene Structure 1956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG031500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAATTCTGGAGAATGGGCCTGCGATGGACTCTCAGTCTTCTCATCTCTTACTGGCACCTCCTCTTCGCCTCGACTACTACTCCTCCTTCCAGATCACCGCCTCCCTCATCTCCGTCGAGGCTCGTCTGCATCATCACCGGCGCGACTTCTGGATTGGGCGCCGCCGCGGCCCATGCTCTCTCCGCTCGTGGCTTCTTTGTGGTTCTCGTTGGACGCTCATCTCGCTTGTTAGAAAAGACGATGATGGAAATTAAGAGGAAGAATGAGAGTGCACAGCTGAAAGCTTTCGAGGTTGATCTCTCATCATTCCAGTCGATTCTTCAGTTTAAAGCCTCCCTACAGCAGTGGCTTTCCGACTCGCAAATGCACTCTTCGATCCAACTCCTAATTAACAATGCTGGAATACTTGCTACCTCGTCTAGATTCACCTCTGAAGGCTTTGATCAGATGATGGCTACAAATTACTTGAGTGCATTTTTTCTTAGTAAACTATTGTTACCGCTTCTCAGAAACAGCTTGATTCCTTCCCGTATAGTGAATGTCACATCTTTCACACATCGAAGTGTATCGAATATACAGGTTGCCAAGGATACTGTATCTGGGAAGTGCTTCAGCAGATTAAAAAGATACCCATATGCTCATGTATATGAGTATTCCAAATTGTTCCTACTGCTCTTCTCCTATGAGCTTCATCGCCAACTTGGCTTGATGGACATATCTCGTCACGTCTCCGTCATTGCTGTGGATCCTGGTGTTGTTGAAACCAACATCTTGCGAGAAGTTCCTCCATGCCTATCCAGTTTGGCCAATAAAGTTTTGAGAAGTCTTTGGTTCTTGCAGTCACCTGAAGTTGGAATCAGTTCCATTCTCGATGCAGCATTTGCTCCACCAGAAACATCTGGAGTTTACTTTTTTGGTGGAAAGGGCAACACTGTCAGCTCTTCTATGCTTTCATATGATGCCAAACTTGCACAGGAACTTTGGAGTGCATCGTCTGATCTGTTTTTAGAGTCACAGCTTGCTTTCAAGGAAACCTCCACTTCTGTATCAAACTTTGTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

355

Amino Acids

39.34

Weight (kDa)

9.42

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	43 - 186	3.2e-23	short chain dehydrogenase
adh_short_C2	PF13561	48 - 192	4.5e-14	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04070 AT5G15940 AT5G15940 AT5G15940 AT5G15940
fragaria_vesca	FvH4_6g28040 FvH4_6g28040
malus_domestica	MD15G1141600.v1.1
prunus_persica	Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1
pyrus_communis	pycom15g12790
rosa_chinensis	RchiOBHm_Chr2g0131741 RchiOBHm_Chr5g0041951 RchiOBHm_Chr6g0247031
rosa_laevigata	RLG00000015229 RLG00000019207
rosa_multiflora	Rmu_sc0006001.1_g000002 Rmu_sc0009880.1_g000012
rosa_roxburghii	Rroxscaffold_1G00038630 Rroxscaffold_2G00112660
rosa_rugosa	Rorug05G0197200 Rorug07G0258400
rosa_samantha	Rh2AG351900 Rh2BG359000 Rh5AG282000 Rh5BG287700 Rh5DG296500 Rh6BG031500
rosa_wichuraiana	Rw0G001410 Rw2G028590 Rw2G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	57, 161
AccBSI	CCGCTC	1 cut(s)	188
AccII	CGCG	2 cut(s)	146, 170
AciI	CCGC	6 cut(s)	101, 165, 168, 170, 186, 503
AclWI	GGATC	3 cut(s)	373, 743, 756
AcoI	YGGCCR	1 cut(s)	807
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	4 cut(s)	308, 456, 598, 870
AcyI	GRCGYC	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	854
AgsI	TTSAA	2 cut(s)	764, 1030
AhdI	GACNNNNNGTC	1 cut(s)	36
AjiI	CACGTC	1 cut(s)	730
AjnI	CCWGG	1 cut(s)	751
AluBI	AGCT	6 cut(s)	280, 287, 519, 691, 942, 1021
AluI	AGCT	6 cut(s)	280, 287, 519, 691, 942, 1021
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	736
Alw44I	GTGCAC	1 cut(s)	273
AlwI	GGATC	3 cut(s)	373, 743, 756
AoxI	GGCC	3 cut(s)	19, 171, 807
ApaLI	GTGCAC	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	878
ApoI	RAATTY	1 cut(s)	5
Asp700I	GAANNNNTTC	3 cut(s)	287, 611, 862
AspLEI	GCGC	2 cut(s)	146, 164
AspS9I	GGNCC	2 cut(s)	19, 172
AsuHPI	GGTGA	4 cut(s)	90, 130, 421, 837
BaeGI	GKGCMC	1 cut(s)	277
BaeI	ACNNNNGTAYC	2 cut(s)	1032, 1065
BalI	TGGCCA	1 cut(s)	809
BamHI	GGATCC	1 cut(s)	748
BanI	GGYRCC	2 cut(s)	57, 161
BauI	CACGAG	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	890
BccI	CCATC	4 cut(s)	21, 241, 448, 706
BciT130I	CCWGG	1 cut(s)	753
BciVI	GTATCC	1 cut(s)	586
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	736
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	341
BfoI	RGCGCY	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	586
BglI	GCCNNNNNGGC	2 cut(s)	170, 705
BisI	GCNGC	4 cut(s)	165, 168, 171, 879
BlsI	GCNGC	4 cut(s)	166, 169, 172, 880
Bme1390I	CCNGG	1 cut(s)	753
BmeRI	GACNNNNNGTC	1 cut(s)	36
BmgBI	CACGTC	1 cut(s)	730
BmgT120I	GGNCC	2 cut(s)	19, 172
BmiI	GGNNCC	3 cut(s)	59, 163, 750
BmrFI	CCNGG	1 cut(s)	753
BmsI	GCATC	4 cut(s)	141, 865, 952, 1001
BpiI	GAAGAC	1 cut(s)	32
BpmI	CTGGAG	2 cut(s)	31, 924
BpuEI	CTTGAG	1 cut(s)	490
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	168, 588
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 70, 97, 100
Bsc4I	CCNNNNNNNGG	1 cut(s)	854
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	3 cut(s)	59, 313, 801
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	753
BseDI	CCNNGG	2 cut(s)	168, 588
BseLI	CCNNNNNNNGG	1 cut(s)	854
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	2 cut(s)	49, 523
BseNI	ACTGG	3 cut(s)	59, 313, 801
BseRI	GAGGAG	2 cut(s)	53, 75
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	890
Bsh1236I	CGCG	2 cut(s)	146, 170
BshFI	GGCC	3 cut(s)	21, 173, 809
BshNI	GGYRCC	2 cut(s)	57, 161
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	854
BsmAI	GTCTC	1 cut(s)	736
BsmBI	CGTCTC	1 cut(s)	736
BsnI	GGCC	3 cut(s)	21, 173, 809
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	6 cut(s)	95, 298, 378, 445, 748, 1000
BspACI	CCGC	6 cut(s)	101, 165, 168, 170, 186, 503
BspANI	GGCC	3 cut(s)	21, 173, 809
BspCNI	CTCAG	2 cut(s)	48, 522
BspFNI	CGCG	2 cut(s)	146, 170
BspLI	GGNNCC	3 cut(s)	59, 163, 750
BspPI	GGATC	3 cut(s)	373, 743, 756
BspQI	GCTCTTC	2 cut(s)	683, 949
BspT107I	GGYRCC	2 cut(s)	57, 161
BsrBI	CCGCTC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	738
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	3 cut(s)	59, 313, 801
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	168, 588
BssMI	GATC	6 cut(s)	95, 298, 378, 445, 748, 1000
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	753
Bst4CI	ACNGT	2 cut(s)	598, 937
Bst6I	CTCTTC	4 cut(s)	71, 379, 683, 949
BstACI	GRCGYC	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	884
BstC8I	GCNNGC	2 cut(s)	23, 1023
BstDEI	CTNAG	3 cut(s)	35, 485, 509
BstDSI	CCRYGG	1 cut(s)	168
BstFNI	CGCG	2 cut(s)	146, 170
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	146, 164
BstKTI	GATC	6 cut(s)	98, 301, 381, 448, 751, 1003
BstMAI	GTCTC	1 cut(s)	736
BstMBI	GATC	6 cut(s)	95, 298, 378, 445, 748, 1000
BstMWI	GCNNNNNNNGC	7 cut(s)	170, 176, 185, 225, 705, 884, 971
BstNI	CCWGG	1 cut(s)	753
BstSCI	CCNGG	1 cut(s)	751
BstSFI	CTRYAG	1 cut(s)	341
BstSLI	GKGCMC	1 cut(s)	277
BstUI	CGCG	2 cut(s)	146, 170
BstV1I	GCAGC	1 cut(s)	890
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	748
BstYI	RGATCY	1 cut(s)	748
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	3 cut(s)	21, 173, 809
BtgI	CCRYGG	1 cut(s)	168
BtgZI	GCGATG	2 cut(s)	40, 680
BtrI	CACGTC	1 cut(s)	730
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	2 cut(s)	353, 933
Cac8I	GCNNGC	2 cut(s)	23, 1023
CfoI	GCGC	2 cut(s)	146, 164
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	19, 172
Cfr42I	CCGCGG	1 cut(s)	171
CseI	GACGC	1 cut(s)	225
CviAII	CATG	3 cut(s)	176, 644, 792
DdeI	CTNAG	3 cut(s)	35, 485, 509
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	6 cut(s)	97, 300, 380, 447, 750, 1002
DpnII	GATC	6 cut(s)	95, 298, 378, 445, 748, 1000
DraI	TTTAAA	1 cut(s)	331
DriI	GACNNNNNGTC	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	807
Eam1104I	CTCTTC	4 cut(s)	71, 379, 683, 949
Eam1105I	GACNNNNNGTC	1 cut(s)	36
EarI	CTCTTC	4 cut(s)	71, 379, 683, 949
Eco130I	CCWWGG	1 cut(s)	588
Eco57I	CTGAAG	4 cut(s)	308, 456, 598, 870
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	588
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	588
Esp3I	CGTCTC	1 cut(s)	736
FaeI	CATG	3 cut(s)	179, 647, 795
FatI	CATG	3 cut(s)	175, 643, 791
FauNDI	CATATG	2 cut(s)	637, 958
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	4 cut(s)	165, 168, 171, 879
Fsp4HI	GCNGC	4 cut(s)	165, 168, 171, 879
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	2 cut(s)	145, 163
GluI	GCNGC	4 cut(s)	165, 168, 171, 879
GsuI	CTGGAG	2 cut(s)	31, 924
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	21, 173, 809
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	225
HhaI	GCGC	2 cut(s)	146, 164
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	179, 647, 795
Hin6I	GCGC	2 cut(s)	144, 162
HinP1I	GCGC	2 cut(s)	144, 162
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	7 cut(s)	31, 319, 359, 426, 523, 858, 1013
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	4 cut(s)	90, 130, 421, 837
Hpy166II	GTNNAC	3 cut(s)	275, 491, 910
Hpy188I	TCNGA	5 cut(s)	358, 436, 450, 512, 1000
Hpy188III	TCNNGA	6 cut(s)	10, 93, 153, 423, 872, 903
Hpy8I	GTNNAC	3 cut(s)	275, 491, 910
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	99, 431, 537
HpyCH4III	ACNGT	2 cut(s)	598, 937
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	8 cut(s)	132, 275, 370, 476, 841, 878, 974, 992
HpyF10VI	GCNNNNNNNGC	7 cut(s)	170, 176, 185, 225, 705, 884, 971
HpyF3I	CTNAG	3 cut(s)	35, 485, 509
HpySE526I	ACGT	1 cut(s)	729
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	179, 647, 795
HspAI	GCGC	2 cut(s)	144, 162
KasI	GGCGCC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	445
KspI	CCGCGG	1 cut(s)	171
Kzo9I	GATC	6 cut(s)	95, 298, 378, 445, 748, 1000
LguI	GCTCTTC	2 cut(s)	683, 949
LmnI	GCTCC	1 cut(s)	892
Lsp1109I	GCAGC	1 cut(s)	890
LweI	GCATC	4 cut(s)	141, 865, 952, 1001
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	5 cut(s)	498, 544, 725, 843, 1014
MalI	GATC	6 cut(s)	97, 300, 380, 447, 750, 1002
MbiI	CCGCTC	1 cut(s)	188
MboI	GATC	6 cut(s)	95, 298, 378, 445, 748, 1000
MboII	GAAGA	7 cut(s)	32, 58, 274, 314, 366, 670, 936
MflI	RGATCY	1 cut(s)	748
MhlI	GDGCHC	1 cut(s)	277
MlsI	TGGCCA	1 cut(s)	809
MluCI	AATT	5 cut(s)	5, 252, 390, 463, 662
MluNI	TGGCCA	1 cut(s)	809
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	3 cut(s)	25, 353, 1022
MmeI	TCCRAC	4 cut(s)	193, 381, 406, 835
Mox20I	TGGCCA	1 cut(s)	809
MroXI	GAANNNNTTC	3 cut(s)	287, 611, 862
MscI	TGGCCA	1 cut(s)	809
MseI	TTAA	4 cut(s)	255, 330, 393, 623
MslI	CAYNNNNRTG	3 cut(s)	564, 648, 743
Msp20I	TGGCCA	1 cut(s)	809
MspA1I	CMGCKG	2 cut(s)	170, 280
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	753
MvaI	CCWGG	1 cut(s)	753
MvnI	CGCG	2 cut(s)	146, 170
MwoI	GCNNNNNNNGC	7 cut(s)	170, 176, 185, 225, 705, 884, 971
NarI	GGCGCC	1 cut(s)	162
NdeI	CATATG	2 cut(s)	637, 958
NdeII	GATC	6 cut(s)	95, 298, 378, 445, 748, 1000
NlaIII	CATG	3 cut(s)	179, 647, 795
NlaIV	GGNNCC	3 cut(s)	59, 163, 750
NmuCI	GTSAC	4 cut(s)	544, 725, 843, 1014
PciSI	GCTCTTC	2 cut(s)	683, 949
PdmI	GAANNNNTTC	3 cut(s)	287, 611, 862
PfeI	GAWTC	4 cut(s)	319, 426, 523, 858
PkrI	GCNGC	4 cut(s)	166, 169, 172, 880
PleI	GAGTC	3 cut(s)	25, 353, 1021
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	3 cut(s)	25, 353, 1021
Psp6I	CCWGG	1 cut(s)	751
PspGI	CCWGG	1 cut(s)	751
PspN4I	GGNNCC	3 cut(s)	59, 163, 750
PspPI	GGNCC	2 cut(s)	19, 172
PsuI	RGATCY	1 cut(s)	748
PvuII	CAGCTG	1 cut(s)	280
RseI	CAYNNNNRTG	3 cut(s)	564, 648, 743
SacII	CCGCGG	1 cut(s)	171
SapI	GCTCTTC	2 cut(s)	683, 949
SaqAI	TTAA	4 cut(s)	255, 330, 393, 623
SatI	GCNGC	4 cut(s)	165, 168, 171, 879
Sau3AI	GATC	6 cut(s)	95, 298, 378, 445, 748, 1000
Sau96I	GGNCC	2 cut(s)	19, 172
SchI	GAGTC	3 cut(s)	25, 353, 1022
ScrFI	CCNGG	1 cut(s)	753
SduI	GDGCHC	1 cut(s)	277
SfaNI	GCATC	4 cut(s)	141, 865, 952, 1001
SfcI	CTRYAG	1 cut(s)	341
SfoI	GGCGCC	1 cut(s)	163
Sfr303I	CCGCGG	1 cut(s)	171
SgrAI	CRCCGGYG	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	171
SmiMI	CAYNNNNRTG	3 cut(s)	564, 648, 743
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	5 cut(s)	5, 252, 390, 463, 662
SsiI	CCGC	6 cut(s)	101, 165, 168, 170, 186, 503
SspDI	GGCGCC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	751
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	2 cut(s)	598, 937
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	8 cut(s)	74, 119, 291, 317, 377, 562, 572, 873
TasI	AATT	5 cut(s)	5, 252, 390, 463, 662
TauI	GCSGC	3 cut(s)	167, 170, 173
TfiI	GAWTC	4 cut(s)	319, 426, 523, 858
Tru1I	TTAA	4 cut(s)	255, 330, 393, 623
Tru9I	TTAA	4 cut(s)	255, 330, 393, 623
TscAI	CASTG	2 cut(s)	353, 940
TseFI	GTSAC	4 cut(s)	544, 725, 843, 1014
TseI	GCWGC	1 cut(s)	878
Tsp45I	GTSAC	4 cut(s)	544, 725, 843, 1014
TspDTI	ATGAA	2 cut(s)	683, 945
TspGWI	ACGGA	2 cut(s)	105, 724
TspRI	CASTG	2 cut(s)	353, 940
VneI	GTGCAC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	5
XbaI	TCTAGA	1 cut(s)	422
XmnI	GAANNNNTTC	3 cut(s)	287, 611, 862
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.