Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003848

Physical Location & Seq

Genomic Coordinates Reverse (-)

56082738 .. 56090876

Gene Structure 8139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGACTCTCAGTCTTCTCATCTCTTACTGGCACCTCCTCTTCGCCTCGACTACTACTCCTCCTTCCAGATCACCGCCTCCCTCATCTCCGTCGAGGCCCGTCTGCATCATCACCGGCGCGACTTCTGGATTGGCGCCGCCGCGGCCCATGCTCTCTCCGCTCGTGGCTTCTTTGTGGTTCTCGTTGGACGCTCATCTCGCTTGTTAGAAAAGACGATGATGGAAATTAAGAGGAAGAATGAGAGTGCACAGCTGAAAGCTTTCGAGGTTGATCTCTCATCATTCCAGTCGATTCTTCAGTTTAAAGCCTCCCTACAGCAGTGGCTTTCCGACTCGCAAATGCACTCTTCGATCCAACTCCTAATTAACAATGCTGGAATACTTGCTACCTCGTCTAGATTCACCTCTGAAGGCTATGATCAGATGATGGCTACAAATTACTTGAGTGCATTTTTTCTTAGTAAACTATTGTTACCGCTTCTCAGAAACAGCTTGATTCCTTCCCGTATAGTGAATGTCACATCTTTCACACATCGAAGTGTATCGAATATACAGGTTGCCAAGGATACTGTATCTGGGAAGTGCTTCAGCAGATTAAAAAGATACCCATATGCTCATGTATATGAGTATTCCAAATTGTTCCTACTGCTCTTCTCCTATGAGCTTCATCGCCAACTTGGCTTGATGGACATATCTCGTCACGTCTCCGTCATTGCTGTGGATCCTGGTGTTGTTGAAACCAACATCTTGCGAGAAGTTCCTCCATGCCTATCCAGTTTGGCCAATAAAGTTTTGAGAAGTCTTTGGTTCTTGCAGTCACCTGAAGTTGGAATCAGTTCCATTCTCGATGCAGCATTTGCTCCACCAGAAACATCTGGAGTTTACTTTTTTGGTGGAAAGGGCAACACTGTCAGCTCTTCTATGCTTTCATATGATGCCAAACTTGCACAGGAACTTTGGAGTGCATCGTCTGATCTGTTTTTAGAGTCACAGCTTGCTTTCAAGGAAACCTCCACTTCTGTATCAAACTTTGTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

346

Amino Acids

38.64

Weight (kDa)

9.11

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	44 - 177	1.9e-17	short chain dehydrogenase
adh_short_C2	PF13561	44 - 183	4.5e-12	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04070 AT5G15940 AT5G15940 AT5G15940 AT5G15940
fragaria_vesca	FvH4_6g28040 FvH4_6g28040
malus_domestica	MD15G1141600.v1.1
prunus_persica	Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1
pyrus_communis	pycom15g12790
rosa_chinensis	RchiOBHm_Chr2g0131741 RchiOBHm_Chr5g0041951 RchiOBHm_Chr6g0247031
rosa_laevigata	RLG00000015229 RLG00000019207
rosa_multiflora	Rmu_sc0006001.1_g000002 Rmu_sc0009880.1_g000012
rosa_roxburghii	Rroxscaffold_1G00038630 Rroxscaffold_2G00112660
rosa_rugosa	Rorug05G0197200 Rorug07G0258400
rosa_samantha	Rh2AG351900 Rh2BG359000 Rh5AG282000 Rh5BG287700 Rh5DG296500 Rh6BG031500
rosa_wichuraiana	Rw0G001410 Rw2G028590 Rw2G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	31, 134
AccBSI	CCGCTC	1 cut(s)	161
AccII	CGCG	2 cut(s)	120, 143
AciI	CCGC	6 cut(s)	75, 138, 141, 143, 159, 476
AclWI	GGATC	3 cut(s)	346, 716, 729
AcoI	YGGCCR	1 cut(s)	780
AcuI	CTGAAG	4 cut(s)	281, 429, 571, 843
AcyI	GRCGYC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	827
AgsI	TTSAA	2 cut(s)	737, 1003
AhdI	GACNNNNNGTC	1 cut(s)	10
AjiI	CACGTC	1 cut(s)	703
AjnI	CCWGG	1 cut(s)	724
AluBI	AGCT	6 cut(s)	253, 260, 492, 664, 915, 994
AluI	AGCT	6 cut(s)	253, 260, 492, 664, 915, 994
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	709
Alw44I	GTGCAC	1 cut(s)	246
AlwI	GGATC	3 cut(s)	346, 716, 729
AoxI	GGCC	3 cut(s)	96, 144, 780
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	851
Asp700I	GAANNNNTTC	3 cut(s)	260, 584, 835
AspLEI	GCGC	2 cut(s)	120, 137
AspS9I	GGNCC	2 cut(s)	97, 145
AsuHPI	GGTGA	4 cut(s)	64, 104, 394, 810
BaeGI	GKGCMC	1 cut(s)	250
BaeI	ACNNNNGTAYC	2 cut(s)	1005, 1038
BalI	TGGCCA	1 cut(s)	782
BamHI	GGATCC	1 cut(s)	721
BanI	GGYRCC	2 cut(s)	31, 134
BauI	CACGAG	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	6
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	863
BccI	CCATC	3 cut(s)	214, 421, 679
BciT130I	CCWGG	1 cut(s)	726
BciVI	GTATCC	1 cut(s)	559
BclI	TGATCA	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	709
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	314
BfoI	RGCGCY	1 cut(s)	138
BfuI	GTATCC	1 cut(s)	559
BglI	GCCNNNNNGGC	2 cut(s)	143, 678
BisI	GCNGC	4 cut(s)	138, 141, 144, 852
BlsI	GCNGC	4 cut(s)	139, 142, 145, 853
Bme1390I	CCNGG	1 cut(s)	726
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmgBI	CACGTC	1 cut(s)	703
BmgT120I	GGNCC	2 cut(s)	97, 145
BmiI	GGNNCC	3 cut(s)	33, 136, 723
BmrFI	CCNGG	1 cut(s)	726
BmsI	GCATC	4 cut(s)	115, 838, 925, 974
BpiI	GAAGAC	1 cut(s)	6
BpmI	CTGGAG	1 cut(s)	897
BpuEI	CTTGAG	1 cut(s)	463
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	141, 561
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 44, 71, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	827
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	3 cut(s)	33, 286, 774
Bse3DI	GCAATG	1 cut(s)	711
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	2 cut(s)	141, 561
BseLI	CCNNNNNNNGG	1 cut(s)	827
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	2 cut(s)	23, 496
BseNI	ACTGG	3 cut(s)	33, 286, 774
BseRI	GAGGAG	2 cut(s)	27, 49
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	863
Bsh1236I	CGCG	2 cut(s)	120, 143
BshFI	GGCC	3 cut(s)	98, 146, 782
BshNI	GGYRCC	2 cut(s)	31, 134
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	827
BsmAI	GTCTC	1 cut(s)	709
BsmBI	CGTCTC	1 cut(s)	709
BsnI	GGCC	3 cut(s)	98, 146, 782
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	6 cut(s)	69, 271, 351, 418, 721, 973
BspACI	CCGC	6 cut(s)	75, 138, 141, 143, 159, 476
BspANI	GGCC	3 cut(s)	98, 146, 782
BspCNI	CTCAG	2 cut(s)	22, 495
BspFNI	CGCG	2 cut(s)	120, 143
BspLI	GGNNCC	3 cut(s)	33, 136, 723
BspPI	GGATC	3 cut(s)	346, 716, 729
BspQI	GCTCTTC	2 cut(s)	656, 922
BspT107I	GGYRCC	2 cut(s)	31, 134
BsrBI	CCGCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	711
BsrFI	RCCGGY	1 cut(s)	114
BsrI	ACTGG	3 cut(s)	33, 286, 774
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	141, 561
BssMI	GATC	6 cut(s)	69, 271, 351, 418, 721, 973
BssNI	GRCGYC	1 cut(s)	135
BssSI	CACGAG	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	2 cut(s)	571, 910
Bst6I	CTCTTC	4 cut(s)	45, 352, 656, 922
BstACI	GRCGYC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	857
BstC8I	GCNNGC	1 cut(s)	996
BstDEI	CTNAG	3 cut(s)	9, 458, 482
BstDSI	CCRYGG	1 cut(s)	141
BstFNI	CGCG	2 cut(s)	120, 143
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	120, 137
BstKTI	GATC	6 cut(s)	72, 274, 354, 421, 724, 976
BstMAI	GTCTC	1 cut(s)	709
BstMBI	GATC	6 cut(s)	69, 271, 351, 418, 721, 973
BstMWI	GCNNNNNNNGC	7 cut(s)	143, 149, 158, 198, 678, 857, 944
BstNI	CCWGG	1 cut(s)	726
BstSCI	CCNGG	1 cut(s)	724
BstSFI	CTRYAG	1 cut(s)	314
BstSLI	GKGCMC	1 cut(s)	250
BstUI	CGCG	2 cut(s)	120, 143
BstV1I	GCAGC	1 cut(s)	863
BstV2I	GAAGAC	1 cut(s)	6
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	3 cut(s)	98, 146, 782
BtgI	CCRYGG	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	653
BtrI	CACGTC	1 cut(s)	703
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	2 cut(s)	326, 906
Cac8I	GCNNGC	1 cut(s)	996
CfoI	GCGC	2 cut(s)	120, 137
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	97, 145
Cfr42I	CCGCGG	1 cut(s)	144
CseI	GACGC	1 cut(s)	198
CviAII	CATG	3 cut(s)	149, 617, 765
DdeI	CTNAG	3 cut(s)	9, 458, 482
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	6 cut(s)	71, 273, 353, 420, 723, 975
DpnII	GATC	6 cut(s)	69, 271, 351, 418, 721, 973
DraI	TTTAAA	1 cut(s)	304
DriI	GACNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	780
Eam1104I	CTCTTC	4 cut(s)	45, 352, 656, 922
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EarI	CTCTTC	4 cut(s)	45, 352, 656, 922
Eco130I	CCWWGG	1 cut(s)	561
Eco57I	CTGAAG	4 cut(s)	281, 429, 571, 843
EcoRII	CCWGG	1 cut(s)	724
EcoT14I	CCWWGG	1 cut(s)	561
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	561
Esp3I	CGTCTC	1 cut(s)	709
FaeI	CATG	3 cut(s)	152, 620, 768
FatI	CATG	3 cut(s)	148, 616, 764
FauNDI	CATATG	2 cut(s)	610, 931
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	4 cut(s)	138, 141, 144, 852
Fsp4HI	GCNGC	4 cut(s)	138, 141, 144, 852
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	2 cut(s)	119, 136
GluI	GCNGC	4 cut(s)	138, 141, 144, 852
GsuI	CTGGAG	1 cut(s)	897
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	98, 146, 782
HapII	CCGG	1 cut(s)	115
HgaI	GACGC	1 cut(s)	198
HhaI	GCGC	2 cut(s)	120, 137
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	3 cut(s)	152, 620, 768
Hin6I	GCGC	2 cut(s)	118, 135
HinP1I	GCGC	2 cut(s)	118, 135
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	7 cut(s)	5, 292, 332, 399, 496, 831, 986
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	4 cut(s)	64, 104, 394, 810
Hpy166II	GTNNAC	3 cut(s)	248, 464, 883
Hpy188I	TCNGA	5 cut(s)	331, 409, 423, 485, 973
Hpy188III	TCNNGA	5 cut(s)	67, 127, 396, 845, 876
Hpy8I	GTNNAC	3 cut(s)	248, 464, 883
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	73, 404, 510
HpyCH4III	ACNGT	2 cut(s)	571, 910
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	8 cut(s)	106, 248, 343, 449, 814, 851, 947, 965
HpyF10VI	GCNNNNNNNGC	7 cut(s)	143, 149, 158, 198, 678, 857, 944
HpyF3I	CTNAG	3 cut(s)	9, 458, 482
HpySE526I	ACGT	1 cut(s)	702
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	152, 620, 768
HspAI	GCGC	2 cut(s)	118, 135
KasI	GGCGCC	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	418
KspI	CCGCGG	1 cut(s)	144
Kzo9I	GATC	6 cut(s)	69, 271, 351, 418, 721, 973
LguI	GCTCTTC	2 cut(s)	656, 922
LmnI	GCTCC	1 cut(s)	865
Lsp1109I	GCAGC	1 cut(s)	863
LweI	GCATC	4 cut(s)	115, 838, 925, 974
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	5 cut(s)	471, 517, 698, 816, 987
MalI	GATC	6 cut(s)	71, 273, 353, 420, 723, 975
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	6 cut(s)	69, 271, 351, 418, 721, 973
MboII	GAAGA	7 cut(s)	6, 32, 247, 287, 339, 643, 909
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	1 cut(s)	250
MlsI	TGGCCA	1 cut(s)	782
MluCI	AATT	4 cut(s)	225, 363, 436, 635
MluNI	TGGCCA	1 cut(s)	782
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	326, 995
MmeI	TCCRAC	4 cut(s)	166, 354, 379, 808
Mox20I	TGGCCA	1 cut(s)	782
MroXI	GAANNNNTTC	3 cut(s)	260, 584, 835
MscI	TGGCCA	1 cut(s)	782
MseI	TTAA	4 cut(s)	228, 303, 366, 596
MslI	CAYNNNNRTG	3 cut(s)	537, 621, 716
Msp20I	TGGCCA	1 cut(s)	782
MspA1I	CMGCKG	2 cut(s)	143, 253
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	726
MvaI	CCWGG	1 cut(s)	726
MvnI	CGCG	2 cut(s)	120, 143
MwoI	GCNNNNNNNGC	7 cut(s)	143, 149, 158, 198, 678, 857, 944
NarI	GGCGCC	1 cut(s)	135
NdeI	CATATG	2 cut(s)	610, 931
NdeII	GATC	6 cut(s)	69, 271, 351, 418, 721, 973
NlaIII	CATG	3 cut(s)	152, 620, 768
NlaIV	GGNNCC	3 cut(s)	33, 136, 723
NmuCI	GTSAC	4 cut(s)	517, 698, 816, 987
PciSI	GCTCTTC	2 cut(s)	656, 922
PdmI	GAANNNNTTC	3 cut(s)	260, 584, 835
PfeI	GAWTC	4 cut(s)	292, 399, 496, 831
PkrI	GCNGC	4 cut(s)	139, 142, 145, 853
PleI	GAGTC	2 cut(s)	326, 994
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	2 cut(s)	326, 994
Psp6I	CCWGG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	3 cut(s)	33, 136, 723
PspPI	GGNCC	2 cut(s)	97, 145
PsuI	RGATCY	1 cut(s)	721
PvuII	CAGCTG	1 cut(s)	253
RseI	CAYNNNNRTG	3 cut(s)	537, 621, 716
SacII	CCGCGG	1 cut(s)	144
SapI	GCTCTTC	2 cut(s)	656, 922
SaqAI	TTAA	4 cut(s)	228, 303, 366, 596
SatI	GCNGC	4 cut(s)	138, 141, 144, 852
Sau3AI	GATC	6 cut(s)	69, 271, 351, 418, 721, 973
Sau96I	GGNCC	2 cut(s)	97, 145
SchI	GAGTC	2 cut(s)	326, 995
ScrFI	CCNGG	1 cut(s)	726
SduI	GDGCHC	1 cut(s)	250
SfaNI	GCATC	4 cut(s)	115, 838, 925, 974
SfcI	CTRYAG	1 cut(s)	314
SfoI	GGCGCC	1 cut(s)	136
Sfr303I	CCGCGG	1 cut(s)	144
SgrAI	CRCCGGYG	1 cut(s)	114
SgrBI	CCGCGG	1 cut(s)	144
SmiMI	CAYNNNNRTG	3 cut(s)	537, 621, 716
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
Sse9I	AATT	4 cut(s)	225, 363, 436, 635
SsiI	CCGC	6 cut(s)	75, 138, 141, 143, 159, 476
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	724
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	2 cut(s)	571, 910
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	8 cut(s)	48, 93, 264, 290, 350, 535, 545, 846
TasI	AATT	4 cut(s)	225, 363, 436, 635
TauI	GCSGC	3 cut(s)	140, 143, 146
TfiI	GAWTC	4 cut(s)	292, 399, 496, 831
Tru1I	TTAA	4 cut(s)	228, 303, 366, 596
Tru9I	TTAA	4 cut(s)	228, 303, 366, 596
TscAI	CASTG	2 cut(s)	326, 913
TseFI	GTSAC	4 cut(s)	517, 698, 816, 987
TseI	GCWGC	1 cut(s)	851
Tsp45I	GTSAC	4 cut(s)	517, 698, 816, 987
TspDTI	ATGAA	2 cut(s)	656, 918
TspGWI	ACGGA	2 cut(s)	79, 697
TspRI	CASTG	2 cut(s)	326, 913
VneI	GTGCAC	1 cut(s)	246
XbaI	TCTAGA	1 cut(s)	395
XmnI	GAANNNNTTC	3 cut(s)	260, 584, 835
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.