Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003848

Physical Location & Seq

Genomic Coordinates Forward (+)

10441983 .. 10446141

Gene Structure 4159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1141600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAAAGCGGCATTGGAATTTGTAACGTCCATGGAATTCTGGAGAATGGCGGTGCTCTGGACATTCTGTCTCCTCATCTCCTACTGGAAGCTCTTTCTGCAACCCAATTCCAATTCTCGTCCTTCTAAATCATCGCCTTCGACTTCGCCTTCGGGATTTAGGCCTGTCTGCGTTATCACTGGTGCTACGTCTGGATTGGGTGCGGCTGCTGCCCATGCTCTCTCCGCCCGCGGTTTCTTCGTGGTTCTCGTTGGACGTTCATCCCACTTGTTAGCAAAGACGATAATGGACATCAAAACTCAGAATGAGAATGCACATCTCAAAGCTTTTGAGGTTGACGTCGCATCCTTCCACTCACTTCTCCTGTTTAAAGCCTCCCTACAGCAGTGGCTTTCTAACTCAGAGATGCACCCTTCCATCCAACTCCTCATCAACAACGCGGGGATACTTGCAACTTCATCTAGACTCACCTCTCAAGGCTATGATCAGATGATGGCTACAAATTACTTAAGTGCATTCTTTCTGAGCAAACTATTATTACCACTTCTCAGAAACAGCCCAGTTCCTTCTCGTATAGTGAATGTCACGTCCTTCACACACCGAAGTGTTTTGAATATACAGATTAACAAGGACACTGTATCTGGGAAGTGCTTCAGCAGACCAAAGCAATACCCATTTGCTCATGTCTACGAGTGTTCCAAATTATTCCTCCTGCTCTTCTCCTATGAGCTTCACCGGCAACGTGGCTTGAAGGATATATCACGTCAGGTCTCTGTCATGTATGTGCTCACACTTTCTCCCATTTCCTTTCCTGAAAGGTATCCTGGAGTTGTGGAAACTAACATCATGCGAGAGGTACCCTCATGCCTATCCAGTCTGGCTTTCATAGTTTTGAAACTTCTGGGCCTTTTGCAGTCACCTGAGAATGGAGTTTGTTCCATTCTTGACGCAGCACTCTCCCCACCAGAAGCGTCTGGAGTATATTATTTTGGAGGAAAGGGTAGGACCGTCGATTCCTCTGTGCTCTCATACAATGCCAAACTTGGGGAGGAGCTTTGGGATGCATCAACTCATCTATTCTTAGAGTCAGAGCTTGCTTCCAAGGAAACCTTCACTTCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

375

Amino Acids

41.4

Weight (kDa)

9.05

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	56 - 198	6.4e-21	short chain dehydrogenase
adh_short_C2	PF13561	61 - 203	4.6e-12	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04070 AT5G15940 AT5G15940 AT5G15940 AT5G15940
fragaria_vesca	FvH4_6g28040 FvH4_6g28040
malus_domestica	MD15G1141600.v1.1
prunus_persica	Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1
pyrus_communis	pycom15g12790
rosa_chinensis	RchiOBHm_Chr2g0131741 RchiOBHm_Chr5g0041951 RchiOBHm_Chr6g0247031
rosa_laevigata	RLG00000015229 RLG00000019207
rosa_multiflora	Rmu_sc0006001.1_g000002 Rmu_sc0009880.1_g000012
rosa_roxburghii	Rroxscaffold_1G00038630 Rroxscaffold_2G00112660
rosa_rugosa	Rorug05G0197200 Rorug07G0258400
rosa_samantha	Rh2AG351900 Rh2BG359000 Rh5AG282000 Rh5BG287700 Rh5DG296500 Rh6BG031500
rosa_wichuraiana	Rw0G001410 Rw2G028590 Rw2G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
Acc65I	GGTACC	1 cut(s)	856
AccB1I	GGYRCC	1 cut(s)	856
AccI	GTMKAC	1 cut(s)	687
AccII	CGCG	2 cut(s)	231, 440
AciI	CCGC	7 cut(s)	8, 50, 203, 225, 229, 231, 440
AcsI	RAATTY	2 cut(s)	17, 35
AcuI	CTGAAG	2 cut(s)	637, 1101
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	1 cut(s)	858
AfiI	CCNNNNNNNGG	2 cut(s)	926, 1044
AflII	CTTAAG	1 cut(s)	508
AgsI	TTSAA	3 cut(s)	613, 751, 895
AhdI	GACNNNNNGTC	1 cut(s)	66
AjiI	CACGTC	2 cut(s)	588, 764
AjnI	CCWGG	1 cut(s)	823
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 1094
AleI	CACNNNNGTG	1 cut(s)	603
AluBI	AGCT	5 cut(s)	91, 326, 730, 1054, 1093
AluI	AGCT	5 cut(s)	91, 326, 730, 1054, 1093
Alw21I	GWGCWC	3 cut(s)	57, 789, 1026
Alw26I	GTCTC	2 cut(s)	74, 775
AoxI	GGCC	2 cut(s)	161, 904
ApeKI	GCWGC	3 cut(s)	206, 209, 950
ApoI	RAATTY	2 cut(s)	17, 35
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
Asp700I	GAANNNNTTC	1 cut(s)	650
Asp718I	GGTACC	1 cut(s)	856
AspS9I	GGNCC	2 cut(s)	904, 1005
AsuHPI	GGTGA	3 cut(s)	460, 725, 909
AvaII	GGWCC	1 cut(s)	1005
BanI	GGYRCC	1 cut(s)	856
Bbv12I	GWGCWC	3 cut(s)	57, 789, 1026
BbvI	GCAGC	3 cut(s)	193, 196, 962
BccI	CCATC	2 cut(s)	425, 487
BciT130I	CCWGG	1 cut(s)	825
BciVI	GTATCC	2 cut(s)	438, 831
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	74, 775
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	1 cut(s)	380
BfrI	CTTAAG	1 cut(s)	508
BfuI	GTATCC	2 cut(s)	438, 831
BisI	GCNGC	5 cut(s)	9, 204, 207, 210, 951
BlsI	GCNGC	5 cut(s)	10, 205, 208, 211, 952
Bme1390I	CCNGG	1 cut(s)	825
Bme18I	GGWCC	1 cut(s)	1005
BmeRI	GACNNNNNGTC	1 cut(s)	66
BmgBI	CACGTC	2 cut(s)	588, 764
BmgT120I	GGNCC	2 cut(s)	904, 1005
BmiI	GGNNCC	1 cut(s)	858
BmrFI	CCNGG	1 cut(s)	825
BmrI	ACTGGG	1 cut(s)	554
BmsI	GCATC	4 cut(s)	353, 396, 1051, 1073
BmuI	ACTGGG	1 cut(s)	554
BplI	GAGNNNNNCTC	2 cut(s)	845, 877
BpmI	CTGGAG	3 cut(s)	61, 846, 996
BpuEI	CTTGAG	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	339
BsaI	GGTCTC	1 cut(s)	775
BsaJI	CCNNGG	3 cut(s)	30, 229, 1101
BsaXI	ACNNNNNCTCC	2 cut(s)	781, 811
Bsc4I	CCNNNNNNNGG	2 cut(s)	926, 1044
Bse118I	RCCGGY	1 cut(s)	735
Bse1I	ACTGG	4 cut(s)	89, 184, 560, 873
BseBI	CCWGG	1 cut(s)	825
BseDI	CCNNGG	3 cut(s)	30, 229, 1101
BseGI	GGATG	4 cut(s)	260, 344, 417, 1066
BseLI	CCNNNNNNNGG	2 cut(s)	926, 1044
BseMII	CTCAG	5 cut(s)	314, 414, 515, 562, 912
BseNI	ACTGG	4 cut(s)	89, 184, 560, 873
BseRI	GAGGAG	3 cut(s)	62, 416, 1064
BseXI	GCAGC	3 cut(s)	193, 196, 962
Bsh1236I	CGCG	2 cut(s)	231, 440
BshFI	GGCC	2 cut(s)	163, 906
BshNI	GGYRCC	1 cut(s)	856
BsiHKAI	GWGCWC	3 cut(s)	57, 789, 1026
BsiSI	CCGG	1 cut(s)	736
BslI	CCNNNNNNNGG	2 cut(s)	926, 1044
BsmAI	GTCTC	2 cut(s)	74, 775
BsmI	GAATGC	2 cut(s)	316, 515
BsnI	GGCC	2 cut(s)	163, 906
Bso31I	GGTCTC	1 cut(s)	775
Bsp1286I	GDGCHC	3 cut(s)	57, 789, 1026
Bsp143I	GATC	1 cut(s)	484
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	7 cut(s)	8, 50, 203, 225, 229, 231, 440
BspANI	GGCC	2 cut(s)	163, 906
BspCNI	CTCAG	5 cut(s)	313, 413, 516, 561, 913
BspFNI	CGCG	2 cut(s)	231, 440
BspLI	GGNNCC	1 cut(s)	858
BspQI	GCTCTTC	1 cut(s)	722
BspT107I	GGYRCC	1 cut(s)	856
BspTI	CTTAAG	1 cut(s)	508
BspTNI	GGTCTC	1 cut(s)	775
BsrFI	RCCGGY	1 cut(s)	735
BsrI	ACTGG	4 cut(s)	89, 184, 560, 873
BssAI	RCCGGY	1 cut(s)	735
BssECI	CCNNGG	3 cut(s)	30, 229, 1101
BssMI	GATC	1 cut(s)	484
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	2 cut(s)	30, 1101
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	2 cut(s)	637, 1009
Bst6I	CTCTTC	1 cut(s)	722
BstACI	GRCGYC	1 cut(s)	339
BstAFI	CTTAAG	1 cut(s)	508
BstC8I	GCNNGC	2 cut(s)	229, 1095
BstDEI	CTNAG	6 cut(s)	300, 400, 524, 548, 921, 1081
BstDSI	CCRYGG	2 cut(s)	30, 229
BstF5I	GGATG	4 cut(s)	260, 344, 417, 1066
BstFNI	CGCG	2 cut(s)	231, 440
BstKTI	GATC	1 cut(s)	487
BstMAI	GTCTC	2 cut(s)	74, 775
BstMBI	GATC	1 cut(s)	484
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 209, 215, 224, 736
BstNI	CCWGG	1 cut(s)	825
BstSCI	CCNGG	1 cut(s)	823
BstSFI	CTRYAG	1 cut(s)	380
BstUI	CGCG	2 cut(s)	231, 440
BstV1I	GCAGC	3 cut(s)	193, 196, 962
BsuI	GTATCC	2 cut(s)	438, 831
BsuRI	GGCC	2 cut(s)	163, 906
BtgI	CCRYGG	2 cut(s)	30, 229
BtgZI	GCGATG	1 cut(s)	117
BtrI	CACGTC	2 cut(s)	588, 764
BtsCI	GGATG	4 cut(s)	260, 344, 417, 1066
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	3 cut(s)	177, 392, 633
Cac8I	GCNNGC	2 cut(s)	229, 1095
Cfr10I	RCCGGY	1 cut(s)	735
Cfr13I	GGNCC	2 cut(s)	904, 1005
Cfr42I	CCGCGG	1 cut(s)	232
CseI	GACGC	2 cut(s)	956, 960
Csp6I	GTAC	1 cut(s)	857
CviAII	CATG	6 cut(s)	31, 215, 683, 778, 847, 864
CviQI	GTAC	1 cut(s)	857
DdeI	CTNAG	6 cut(s)	300, 400, 524, 548, 921, 1081
DpnI	GATC	1 cut(s)	486
DpnII	GATC	1 cut(s)	484
DraI	TTTAAA	1 cut(s)	370
DriI	GACNNNNNGTC	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	722
Eam1105I	GACNNNNNGTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	722
EciI	GGCGGA	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	30, 1101
Eco147I	AGGCCT	1 cut(s)	163
Eco31I	GGTCTC	1 cut(s)	775
Eco47I	GGWCC	1 cut(s)	1005
Eco57I	CTGAAG	2 cut(s)	637, 1101
EcoRI	GAATTC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	823
EcoT14I	CCWWGG	2 cut(s)	30, 1101
EcoT22I	ATGCAT	1 cut(s)	1066
ErhI	CCWWGG	2 cut(s)	30, 1101
FaeI	CATG	6 cut(s)	34, 218, 686, 781, 850, 867
FalI	AAGNNNNNCTT	1 cut(s)	1094
FatI	CATG	6 cut(s)	30, 214, 682, 777, 846, 863
FauI	CCCGC	2 cut(s)	236, 433
FbaI	TGATCA	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	687
Fnu4HI	GCNGC	5 cut(s)	9, 204, 207, 210, 951
FokI	GGATG	4 cut(s)	247, 331, 404, 1073
Fsp4HI	GCNGC	5 cut(s)	9, 204, 207, 210, 951
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	5 cut(s)	9, 204, 207, 210, 951
GsuI	CTGGAG	3 cut(s)	61, 846, 996
HaeIII	GGCC	2 cut(s)	163, 906
HapII	CCGG	1 cut(s)	736
HgaI	GACGC	2 cut(s)	956, 960
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	6 cut(s)	34, 218, 686, 781, 850, 867
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	3 cut(s)	465, 1013, 1085
HpaII	CCGG	1 cut(s)	736
HphI	GGTGA	3 cut(s)	460, 725, 909
Hpy166II	GTNNAC	2 cut(s)	337, 688
Hpy188I	TCNGA	7 cut(s)	303, 403, 489, 525, 551, 1090, 1120
Hpy188III	TCNNGA	8 cut(s)	40, 58, 153, 192, 462, 812, 944, 975
Hpy8I	GTNNAC	2 cut(s)	337, 688
Hpy99I	CGWCG	2 cut(s)	344, 1013
HpyAV	CCTTC	9 cut(s)	132, 147, 159, 358, 423, 576, 601, 745, 1120
HpyCH4III	ACNGT	2 cut(s)	637, 1009
HpyCH4IV	ACGT	7 cut(s)	26, 188, 256, 339, 587, 742, 763
HpyCH4V	TGCA	7 cut(s)	100, 314, 409, 452, 515, 913, 1064
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 209, 215, 224, 736
HpyF3I	CTNAG	6 cut(s)	300, 400, 524, 548, 921, 1081
HpySE526I	ACGT	7 cut(s)	26, 188, 256, 339, 587, 742, 763
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	6 cut(s)	34, 218, 686, 781, 850, 867
KpnI	GGTACC	1 cut(s)	860
Ksp22I	TGATCA	1 cut(s)	484
KspI	CCGCGG	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	484
LguI	GCTCTTC	1 cut(s)	722
LmnI	GCTCC	1 cut(s)	1051
Lsp1109I	GCAGC	3 cut(s)	193, 196, 962
LweI	GCATC	4 cut(s)	353, 396, 1051, 1073
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	7 cut(s)	26, 188, 256, 339, 587, 742, 763
MaeIII	GTNAC	3 cut(s)	22, 583, 915
MalI	GATC	1 cut(s)	486
MboI	GATC	1 cut(s)	484
MboII	GAAGA	2 cut(s)	229, 709
MhlI	GDGCHC	3 cut(s)	57, 789, 1026
MluCI	AATT	6 cut(s)	17, 35, 106, 112, 502, 701
MlyI	GAGTC	2 cut(s)	459, 1094
MmeI	TCCRAC	2 cut(s)	232, 445
Mph1103I	ATGCAT	1 cut(s)	1066
MroXI	GAANNNNTTC	1 cut(s)	650
MseI	TTAA	3 cut(s)	369, 509, 624
MslI	CAYNNNNRTG	2 cut(s)	603, 782
MspA1I	CMGCKG	1 cut(s)	231
MspCI	CTTAAG	1 cut(s)	508
MspI	CCGG	1 cut(s)	736
MspR9I	CCNGG	1 cut(s)	825
Mva1269I	GAATGC	2 cut(s)	316, 515
MvaI	CCWGG	1 cut(s)	825
MvnI	CGCG	2 cut(s)	231, 440
MwoI	GCNNNNNNNGC	5 cut(s)	97, 209, 215, 224, 736
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	1 cut(s)	484
NlaIII	CATG	6 cut(s)	34, 218, 686, 781, 850, 867
NlaIV	GGNNCC	1 cut(s)	858
NmuCI	GTSAC	2 cut(s)	583, 915
NsiI	ATGCAT	1 cut(s)	1066
OliI	CACNNNNGTG	1 cut(s)	603
PceI	AGGCCT	1 cut(s)	163
PciSI	GCTCTTC	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	2 cut(s)	316, 515
PdmI	GAANNNNTTC	1 cut(s)	650
PfeI	GAWTC	1 cut(s)	1013
PfoI	TCCNGGA	1 cut(s)	823
PkrI	GCNGC	5 cut(s)	10, 205, 208, 211, 952
PleI	GAGTC	2 cut(s)	459, 1093
PpsI	GAGTC	2 cut(s)	459, 1093
Psp6I	CCWGG	1 cut(s)	823
PspGI	CCWGG	1 cut(s)	823
PspN4I	GGNNCC	1 cut(s)	858
PspPI	GGNCC	2 cut(s)	904, 1005
RsaI	GTAC	1 cut(s)	858
RsaNI	GTAC	1 cut(s)	857
RseI	CAYNNNNRTG	2 cut(s)	603, 782
SacII	CCGCGG	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	722
SaqAI	TTAA	3 cut(s)	369, 509, 624
SatI	GCNGC	5 cut(s)	9, 204, 207, 210, 951
Sau3AI	GATC	1 cut(s)	484
Sau96I	GGNCC	2 cut(s)	904, 1005
SchI	GAGTC	2 cut(s)	459, 1094
ScrFI	CCNGG	1 cut(s)	825
SduI	GDGCHC	3 cut(s)	57, 789, 1026
SfaNI	GCATC	4 cut(s)	353, 396, 1051, 1073
SfcI	CTRYAG	1 cut(s)	380
Sfr303I	CCGCGG	1 cut(s)	232
SgrBI	CCGCGG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	1005
SmiMI	CAYNNNNRTG	2 cut(s)	603, 782
SmlI	CTYRAG	2 cut(s)	474, 508
SmoI	CTYRAG	2 cut(s)	474, 508
Sse9I	AATT	6 cut(s)	17, 35, 106, 112, 502, 701
SseBI	AGGCCT	1 cut(s)	163
SsiI	CCGC	7 cut(s)	8, 50, 203, 225, 229, 231, 440
SspMI	CTAG	1 cut(s)	462
StuI	AGGCCT	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	823
StyI	CCWWGG	2 cut(s)	30, 1101
TaaI	ACNGT	2 cut(s)	637, 1009
TaiI	ACGT	7 cut(s)	29, 191, 259, 342, 590, 745, 766
TaqI	TCGA	2 cut(s)	140, 1011
TasI	AATT	6 cut(s)	17, 35, 106, 112, 502, 701
TauI	GCSGC	2 cut(s)	11, 206
TfiI	GAWTC	1 cut(s)	1013
Tru1I	TTAA	3 cut(s)	369, 509, 624
Tru9I	TTAA	3 cut(s)	369, 509, 624
TscAI	CASTG	3 cut(s)	184, 392, 640
TseFI	GTSAC	2 cut(s)	583, 915
TseI	GCWGC	3 cut(s)	206, 209, 950
Tsp45I	GTSAC	2 cut(s)	583, 915
TspDTI	ATGAA	4 cut(s)	17, 249, 447, 874
TspRI	CASTG	3 cut(s)	184, 392, 640
Vha464I	CTTAAG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	1005
XapI	RAATTY	2 cut(s)	17, 35
XbaI	TCTAGA	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	687
XmnI	GAANNNNTTC	1 cut(s)	650
XspI	CTAG	1 cut(s)	462
ZraI	GACGTC	1 cut(s)	340
Zsp2I	ATGCAT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.