Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003848

Physical Location & Seq

Genomic Coordinates Reverse (-)

22185401 .. 22189297

Gene Structure 3897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G264400.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGATGATGGAGGCACTGGAATTTGTAATGTCCGTGGAATTCTGGAGAATGGCGGTGCTCTGGACATTCTGTCTCCTCCTCTCTTACTGGAAGCTCATTGCTTCAAATTCTTGTCCTTCCAAACCACCACCTTCACCTTCAGCATTTGGACATAGGCCTCTCTGCATTATCACTGGTGCAACGTCTGGATTGGGTGCGGCTGCTGCCCATGCTCTCTCCGCCCATGGTTTCTTCGTGGTTCTTGTTGGACGCTCATCCCACTTGTTAGCAAAGACGATGATGGACATCAAAACTCAGAATAAGAATGCACATCTCAAAGCATTTCAGGTTGATCTCGCATCGTTCGACTCAATTCTCCAGTTCAAAGCCTCCCTACAGAAGTGGCTTTCTGACTCAGAGATGCACTCTTCCATCCAACTCCTTATAAACAATGCCGGGATACTCGCAACTTCTTCCAGACTCACTTGTCAAGGCTACGATCAGATGATGGCTACAAATTACTTAGGTGCATTCTCTCTGACCAAACTATTATTACCACTTCTCAGAAACAGTCCAATTCCTTCCCGTATAGTGAATGTAACTTCCTTCACACACCGAAGTGTATTGAATGTCCAGGTTAACAAGGACATTGTATCTGGGAAGTGCTTCGGCAGATCAAAACGGTACCCATATGCTCATGTCTATGAGTATTCCAAACTATTCCTGCTGCTCTTCTCCTATGAGCTTCACCGGCAACTTGGCTTGATGGATATCTCTCGTCAGGTCTCTGTCATTGCTGTGGATCCTGGATTTGTGGAAACCAACATCATGCGAGAAGTTCCCTCATGCCTATCCAGTCTGGCTTCCATAGTTCTAAAACTTCTGGGCCTGTTGCAGTCACCTGAAATTGGGGTTAGCTCCATTCTTGATGCAGCACTCGCCCCACCAGAAACATCTGGCGTATACTATTTTGGTGGAAAGGGTGGGACCGTGAACTCCTCTGTGCTTTCATACGATGCCAAACTTGCCAAGGAACTTTGGAATGCATCGAGTGATCTATTTTTAGAGTCAGAGCTTGCTTCCAAGGAAACCATTTCTGCATCAAATGGTATATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

366

Amino Acids

39.88

Weight (kDa)

8.8

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04070 AT5G15940 AT5G15940 AT5G15940 AT5G15940
fragaria_vesca	FvH4_6g28040 FvH4_6g28040
malus_domestica	MD15G1141600.v1.1
prunus_persica	Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1
pyrus_communis	pycom15g12790
rosa_chinensis	RchiOBHm_Chr2g0131741 RchiOBHm_Chr5g0041951 RchiOBHm_Chr6g0247031
rosa_laevigata	RLG00000015229 RLG00000019207
rosa_multiflora	Rmu_sc0006001.1_g000002 Rmu_sc0009880.1_g000012
rosa_roxburghii	Rroxscaffold_1G00038630 Rroxscaffold_2G00112660
rosa_rugosa	Rorug05G0197200 Rorug07G0258400
rosa_samantha	Rh2AG351900 Rh2BG359000 Rh5AG282000 Rh5BG287700 Rh5DG296500 Rh6BG031500
rosa_wichuraiana	Rw0G001410 Rw2G028590 Rw2G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
AasI	GACNNNNNNGTC	1 cut(s)	465
Acc65I	GGTACC	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	663
AccI	GTMKAC	1 cut(s)	942
AciI	CCGC	3 cut(s)	53, 197, 219
AclWI	GGATC	2 cut(s)	776, 789
AcsI	RAATTY	3 cut(s)	20, 38, 106
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	665
AfiI	CCNNNNNNNGG	1 cut(s)	887
AgsI	TTSAA	3 cut(s)	105, 364, 607
AhdI	GACNNNNNGTC	1 cut(s)	69
AjnI	CCWGG	2 cut(s)	612, 784
AleI	CACNNNNGTG	1 cut(s)	597
AluBI	AGCT	4 cut(s)	94, 724, 897, 1054
AluI	AGCT	4 cut(s)	94, 724, 897, 1054
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	2 cut(s)	77, 769
AlwI	GGATC	2 cut(s)	776, 789
AoxI	GGCC	2 cut(s)	155, 865
ApeKI	GCWGC	4 cut(s)	200, 203, 706, 911
ApoI	RAATTY	3 cut(s)	20, 38, 106
Asp700I	GAANNNNTTC	1 cut(s)	644
Asp718I	GGTACC	1 cut(s)	663
AspS9I	GGNCC	2 cut(s)	865, 966
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	3 cut(s)	126, 719, 870
AvaII	GGWCC	1 cut(s)	966
BamHI	GGATCC	1 cut(s)	781
BanI	GGYRCC	1 cut(s)	663
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	4 cut(s)	187, 190, 693, 923
BccI	CCATC	4 cut(s)	274, 419, 481, 739
BciT130I	CCWGG	2 cut(s)	614, 786
BciVI	GTATCC	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	77, 769
BfmI	CTRYAG	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	432
BisI	GCNGC	5 cut(s)	198, 201, 204, 707, 912
BlsI	GCNGC	5 cut(s)	199, 202, 205, 708, 913
Bme1390I	CCNGG	3 cut(s)	436, 614, 786
Bme18I	GGWCC	1 cut(s)	966
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmgT120I	GGNCC	2 cut(s)	865, 966
BmiI	GGNNCC	3 cut(s)	665, 783, 967
BmrFI	CCNGG	3 cut(s)	436, 614, 786
BmsI	GCATC	6 cut(s)	347, 390, 898, 985, 1034, 1088
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpmI	CTGGAG	2 cut(s)	64, 341
BpuMI	CCSGG	1 cut(s)	436
BsaBI	GATNNNNATC	2 cut(s)	284, 749
BsaI	GGTCTC	1 cut(s)	769
BsaJI	CCNNGG	4 cut(s)	33, 223, 1008, 1062
Bsc4I	CCNNNNNNNGG	1 cut(s)	887
Bse118I	RCCGGY	1 cut(s)	729
Bse1I	ACTGG	5 cut(s)	21, 92, 178, 358, 834
Bse3DI	GCAATG	2 cut(s)	96, 771
Bse8I	GATNNNNATC	2 cut(s)	284, 749
BseBI	CCWGG	2 cut(s)	614, 786
BseDI	CCNNGG	4 cut(s)	33, 223, 1008, 1062
BseGI	GGATG	2 cut(s)	254, 411
BseJI	GATNNNNATC	2 cut(s)	284, 749
BseLI	CCNNNNNNNGG	1 cut(s)	887
BseMI	GCAATG	2 cut(s)	96, 771
BseMII	CTCAG	3 cut(s)	308, 408, 556
BseNI	ACTGG	5 cut(s)	21, 92, 178, 358, 834
BseRI	GAGGAG	3 cut(s)	65, 68, 967
BseXI	GCAGC	4 cut(s)	187, 190, 693, 923
BshFI	GGCC	2 cut(s)	157, 867
BshNI	GGYRCC	1 cut(s)	663
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	435, 730
BslFI	GGGAC	1 cut(s)	979
BslI	CCNNNNNNNGG	1 cut(s)	887
BsmAI	GTCTC	2 cut(s)	77, 769
BsmFI	GGGAC	1 cut(s)	979
BsmI	GAATGC	3 cut(s)	310, 509, 1027
BsnI	GGCC	2 cut(s)	157, 867
Bso31I	GGTCTC	1 cut(s)	769
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	5 cut(s)	331, 478, 653, 781, 1033
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	3 cut(s)	53, 197, 219
BspANI	GGCC	2 cut(s)	157, 867
BspCNI	CTCAG	3 cut(s)	307, 407, 555
BspLI	GGNNCC	3 cut(s)	665, 783, 967
BspPI	GGATC	2 cut(s)	776, 789
BspQI	GCTCTTC	1 cut(s)	716
BspT107I	GGYRCC	1 cut(s)	663
BspTNI	GGTCTC	1 cut(s)	769
BsrDI	GCAATG	2 cut(s)	96, 771
BsrFI	RCCGGY	1 cut(s)	729
BsrI	ACTGG	5 cut(s)	21, 92, 178, 358, 834
BssAI	RCCGGY	1 cut(s)	729
BssECI	CCNNGG	4 cut(s)	33, 223, 1008, 1062
BssMI	GATC	5 cut(s)	331, 478, 653, 781, 1033
BssNAI	GTATAC	1 cut(s)	943
BssT1I	CCWWGG	3 cut(s)	223, 1008, 1062
Bst1107I	GTATAC	1 cut(s)	943
Bst2UI	CCWGG	2 cut(s)	614, 786
Bst4CI	ACNGT	3 cut(s)	551, 663, 970
Bst6I	CTCTTC	2 cut(s)	412, 716
BstC8I	GCNNGC	1 cut(s)	1056
BstDEI	CTNAG	4 cut(s)	294, 394, 502, 542
BstDSI	CCRYGG	2 cut(s)	33, 223
BstF5I	GGATG	2 cut(s)	254, 411
BstKTI	GATC	5 cut(s)	334, 481, 656, 784, 1036
BstMAI	GTCTC	2 cut(s)	77, 769
BstMBI	GATC	5 cut(s)	331, 478, 653, 781, 1033
BstMWI	GCNNNNNNNGC	6 cut(s)	203, 209, 218, 730, 917, 1004
BstNI	CCWGG	2 cut(s)	614, 786
BstSCI	CCNGG	3 cut(s)	434, 612, 784
BstSFI	CTRYAG	1 cut(s)	374
BstV1I	GCAGC	4 cut(s)	187, 190, 693, 923
BstX2I	RGATCY	1 cut(s)	781
BstYI	RGATCY	1 cut(s)	781
BstZ17I	GTATAC	1 cut(s)	943
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	2 cut(s)	157, 867
BtgI	CCRYGG	2 cut(s)	33, 223
BtsCI	GGATG	2 cut(s)	254, 411
BtsIMutI	CAGTG	2 cut(s)	14, 171
Cac8I	GCNNGC	1 cut(s)	1056
Cfr10I	RCCGGY	1 cut(s)	729
Cfr13I	GGNCC	2 cut(s)	865, 966
CseI	GACGC	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	664
CviAII	CATG	5 cut(s)	209, 224, 677, 808, 825
CviQI	GTAC	1 cut(s)	664
DdeI	CTNAG	4 cut(s)	294, 394, 502, 542
DpnI	GATC	5 cut(s)	333, 480, 655, 783, 1035
DpnII	GATC	5 cut(s)	331, 478, 653, 781, 1033
DrdI	GACNNNNNNGTC	1 cut(s)	465
DriI	GACNNNNNGTC	1 cut(s)	69
DseDI	GACNNNNNNGTC	1 cut(s)	465
Eam1104I	CTCTTC	2 cut(s)	412, 716
Eam1105I	GACNNNNNGTC	1 cut(s)	69
EarI	CTCTTC	2 cut(s)	412, 716
EciI	GGCGGA	1 cut(s)	208
Eco130I	CCWWGG	3 cut(s)	223, 1008, 1062
Eco147I	AGGCCT	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	769
Eco32I	GATATC	1 cut(s)	751
Eco47I	GGWCC	1 cut(s)	966
Eco57I	CTGAAG	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	38
EcoRII	CCWGG	2 cut(s)	612, 784
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	3 cut(s)	223, 1008, 1062
EcoT22I	ATGCAT	1 cut(s)	1027
ErhI	CCWWGG	3 cut(s)	223, 1008, 1062
FaeI	CATG	5 cut(s)	212, 227, 680, 811, 828
FaqI	GGGAC	1 cut(s)	979
FatI	CATG	5 cut(s)	208, 223, 676, 807, 824
FauNDI	CATATG	1 cut(s)	670
FblI	GTMKAC	1 cut(s)	942
Fnu4HI	GCNGC	5 cut(s)	198, 201, 204, 707, 912
FokI	GGATG	2 cut(s)	241, 398
Fsp4HI	GCNGC	5 cut(s)	198, 201, 204, 707, 912
GluI	GCNGC	5 cut(s)	198, 201, 204, 707, 912
GsuI	CTGGAG	2 cut(s)	64, 341
HaeIII	GGCC	2 cut(s)	157, 867
HapII	CCGG	2 cut(s)	435, 730
HgaI	GACGC	1 cut(s)	258
Hin1II	CATG	5 cut(s)	212, 227, 680, 811, 828
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	4 cut(s)	347, 392, 459, 1046
HpaI	GTTAAC	1 cut(s)	619
HpaII	CCGG	2 cut(s)	435, 730
HphI	GGTGA	3 cut(s)	126, 719, 870
Hpy166II	GTNNAC	3 cut(s)	619, 943, 973
Hpy188I	TCNGA	7 cut(s)	297, 391, 397, 483, 519, 545, 1051
Hpy188III	TCNNGA	5 cut(s)	43, 61, 186, 456, 905
Hpy8I	GTNNAC	3 cut(s)	619, 943, 973
HpyAV	CCTTC	5 cut(s)	126, 141, 147, 570, 595
HpyCH4III	ACNGT	3 cut(s)	551, 663, 970
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	9 cut(s)	165, 179, 308, 403, 509, 874, 911, 1025, 1079
HpyF10VI	GCNNNNNNNGC	6 cut(s)	203, 209, 218, 730, 917, 1004
HpyF3I	CTNAG	4 cut(s)	294, 394, 502, 542
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	5 cut(s)	212, 227, 680, 811, 828
KpnI	GGTACC	1 cut(s)	667
KspAI	GTTAAC	1 cut(s)	619
Kzo9I	GATC	5 cut(s)	331, 478, 653, 781, 1033
LguI	GCTCTTC	1 cut(s)	716
LmnI	GCTCC	1 cut(s)	902
Lsp1109I	GCAGC	4 cut(s)	187, 190, 693, 923
LweI	GCATC	6 cut(s)	347, 390, 898, 985, 1034, 1088
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	577, 876
MalI	GATC	5 cut(s)	333, 480, 655, 783, 1035
MboI	GATC	5 cut(s)	331, 478, 653, 781, 1033
MboII	GAAGA	4 cut(s)	223, 399, 444, 703
MflI	RGATCY	1 cut(s)	781
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	7 cut(s)	20, 38, 106, 351, 496, 555, 885
MlyI	GAGTC	4 cut(s)	341, 386, 453, 1055
MmeI	TCCRAC	2 cut(s)	226, 439
MnlI	CCTC	7 cut(s)	4, 86, 89, 168, 379, 832, 988
Mph1103I	ATGCAT	1 cut(s)	1027
MroXI	GAANNNNTTC	1 cut(s)	644
MseI	TTAA	1 cut(s)	618
MslI	CAYNNNNRTG	3 cut(s)	597, 681, 776
MspI	CCGG	2 cut(s)	435, 730
MspR9I	CCNGG	3 cut(s)	436, 614, 786
Mva1269I	GAATGC	3 cut(s)	310, 509, 1027
MvaI	CCWGG	2 cut(s)	614, 786
MwoI	GCNNNNNNNGC	6 cut(s)	203, 209, 218, 730, 917, 1004
NciI	CCSGG	1 cut(s)	436
NcoI	CCATGG	1 cut(s)	223
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	5 cut(s)	331, 478, 653, 781, 1033
NlaIII	CATG	5 cut(s)	212, 227, 680, 811, 828
NlaIV	GGNNCC	3 cut(s)	665, 783, 967
NmuCI	GTSAC	1 cut(s)	876
NsiI	ATGCAT	1 cut(s)	1027
OliI	CACNNNNGTG	1 cut(s)	597
PceI	AGGCCT	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PctI	GAATGC	3 cut(s)	310, 509, 1027
PdmI	GAANNNNTTC	1 cut(s)	644
PfoI	TCCNGGA	1 cut(s)	784
PkrI	GCNGC	5 cut(s)	199, 202, 205, 708, 913
PleI	GAGTC	4 cut(s)	341, 386, 453, 1054
PpsI	GAGTC	4 cut(s)	341, 386, 453, 1054
PsiI	TTATAA	1 cut(s)	425
Psp6I	CCWGG	2 cut(s)	612, 784
PspGI	CCWGG	2 cut(s)	612, 784
PspN4I	GGNNCC	3 cut(s)	665, 783, 967
PspPI	GGNCC	2 cut(s)	865, 966
PsuI	RGATCY	1 cut(s)	781
RsaI	GTAC	1 cut(s)	665
RsaNI	GTAC	1 cut(s)	664
RseI	CAYNNNNRTG	3 cut(s)	597, 681, 776
SapI	GCTCTTC	1 cut(s)	716
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	5 cut(s)	198, 201, 204, 707, 912
Sau3AI	GATC	5 cut(s)	331, 478, 653, 781, 1033
Sau96I	GGNCC	2 cut(s)	865, 966
SchI	GAGTC	4 cut(s)	341, 386, 453, 1055
ScrFI	CCNGG	3 cut(s)	436, 614, 786
SduI	GDGCHC	1 cut(s)	60
SfaNI	GCATC	6 cut(s)	347, 390, 898, 985, 1034, 1088
SfcI	CTRYAG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	966
SmiMI	CAYNNNNRTG	3 cut(s)	597, 681, 776
Sse9I	AATT	7 cut(s)	20, 38, 106, 351, 496, 555, 885
SseBI	AGGCCT	1 cut(s)	157
SsiI	CCGC	3 cut(s)	53, 197, 219
StuI	AGGCCT	1 cut(s)	157
StyD4I	CCNGG	3 cut(s)	434, 612, 784
StyI	CCWWGG	3 cut(s)	223, 1008, 1062
TaaI	ACNGT	3 cut(s)	551, 663, 970
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	2 cut(s)	345, 1028
TasI	AATT	7 cut(s)	20, 38, 106, 351, 496, 555, 885
TauI	GCSGC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	2 cut(s)	21, 178
TseFI	GTSAC	1 cut(s)	876
TseI	GCWGC	4 cut(s)	200, 203, 706, 911
Tsp45I	GTSAC	1 cut(s)	876
TspDTI	ATGAA	1 cut(s)	978
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	2 cut(s)	21, 178
VpaK11BI	GGWCC	1 cut(s)	966
XapI	RAATTY	3 cut(s)	20, 38, 106
XmiI	GTMKAC	1 cut(s)	942
XmnI	GAANNNNTTC	1 cut(s)	644
Zsp2I	ATGCAT	1 cut(s)	1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.