Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005096

Physical Location & Seq

Genomic Coordinates Forward (+)

5652171 .. 5653173

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCTCTCGAATGGGTTGTGTTAGGTTACGCAGCAGCAGCTGAAGCGATCATGGTGATTCTCTTGACGATGCCTGGACTTGACGCTCTCCGCAAAGGATTAGTCGCTGTAACTCGTAATCTCTTGAAACCGTTTCTCTCGATAATCCCGTTTTGTCTCTTCCTTCTTATGGATATTTACTGGAAGTATGAGACTCGACCTTCTTGCGATGGTGATTCGTGTACTCCTTCTGAGCATCTTCGTCACCAGAAATCGATCATGAAGTCTCAGCGTAACGCGCTTCTGATTGCGTCGGCTCTTGTTTTCTACTGGATTTTGTACTCTGTCACGAATTTGGTTGTGAGGATTGAGCAGCTTAATCAGAGGGTTGAGAGGCTCAAGAACAAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.88

Weight (kDa)

9.1

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03160 AT5G17190
fragaria_vesca	FvH4_4g33810
malus_domestica	MD11G1246100.v1.1 MD13G1029700.v1.1 MD16G1020500.v1.1 MD16G1237600.v1.1
prunus_persica	Prupe.1G331700_v2.0.a1
pyrus_communis	pycom13g01810 pycom16g01840
rosa_chinensis	RchiOBHm_Chr4g0443321 RchiOBHm_Chr6g0253461
rosa_multiflora	Rmu_sc0007829.1_g000004 Rmu_ssc0000122.1_g000007
rosa_roxburghii	Rroxscaffold_5G00383900
rosa_rugosa	Rorug04G0345500
rosa_samantha	Rh2AG453500 Rh2AG508000 Rh2CG440600 Rh2CG493300 Rh4BG412100 Rh4BG426800 Rh4CG427500 Rh4DG033000 Rh4DG066100 Rh4DG407500 Rh7AG069700
rosa_wichuraiana	Rw0G022010 Rw2G037020 Rw4G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	278
AciI	CCGC	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	2 cut(s)	223, 320
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	2 cut(s)	41, 355
AluI	AGCT	2 cut(s)	41, 355
Alw26I	GTCTC	3 cut(s)	161, 185, 270
AlwNI	CAGNNNCTG	1 cut(s)	41
ApeKI	GCWGC	4 cut(s)	32, 35, 38, 352
ApoI	RAATTY	1 cut(s)	331
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AspLEI	GCGC	1 cut(s)	280
AsuHPI	GGTGA	3 cut(s)	67, 224, 236
BbvI	GCAGC	4 cut(s)	44, 47, 50, 364
BccI	CCATC	1 cut(s)	203
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	1 cut(s)	75
BcoDI	GTCTC	3 cut(s)	161, 185, 270
BisI	GCNGC	4 cut(s)	33, 36, 39, 353
BlsI	GCNGC	4 cut(s)	34, 37, 40, 354
Bme1390I	CCNGG	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	2 cut(s)	60, 244
BpuEI	CTTGAG	1 cut(s)	362
Bsa29I	ATCGAT	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	185, 314
BseBI	CCWGG	1 cut(s)	75
BseCI	ATCGAT	1 cut(s)	254
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	2 cut(s)	222, 281
BseNI	ACTGG	2 cut(s)	185, 314
BseXI	GCAGC	4 cut(s)	44, 47, 50, 364
Bsh1236I	CGCG	1 cut(s)	278
BshVI	ATCGAT	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	3 cut(s)	161, 185, 270
Bsp143I	GATC	2 cut(s)	48, 255
BspACI	CCGC	1 cut(s)	91
BspCNI	CTCAG	2 cut(s)	223, 280
BspDI	ATCGAT	1 cut(s)	254
BspFNI	CGCG	1 cut(s)	278
BspHI	TCATGA	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	185, 314
BssMI	GATC	2 cut(s)	48, 255
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	132
Bst6I	CTCTTC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	231, 267
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	2 cut(s)	51, 258
BstMAI	GTCTC	3 cut(s)	161, 185, 270
BstMBI	GATC	2 cut(s)	48, 255
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 44, 277
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	4 cut(s)	44, 47, 50, 364
Bsu15I	ATCGAT	1 cut(s)	254
BsuTUI	ATCGAT	1 cut(s)	254
BtgZI	GCGATG	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	41
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	1 cut(s)	280
ClaI	ATCGAT	1 cut(s)	254
CseI	GACGC	2 cut(s)	92, 279
Csp6I	GTAC	2 cut(s)	222, 319
CviAII	CATG	2 cut(s)	52, 259
CviJI	RGCY	5 cut(s)	5, 41, 296, 355, 376
CviKI_1	RGCY	5 cut(s)	5, 41, 296, 355, 376
CviQI	GTAC	2 cut(s)	222, 319
DdeI	CTNAG	2 cut(s)	231, 267
DpnI	GATC	2 cut(s)	50, 257
DpnII	GATC	2 cut(s)	48, 255
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	73
FaeI	CATG	2 cut(s)	55, 262
FaiI	YATR	4 cut(s)	53, 170, 189, 260
FatI	CATG	2 cut(s)	51, 258
Fnu4HI	GCNGC	4 cut(s)	33, 36, 39, 353
Fsp4HI	GCNGC	4 cut(s)	33, 36, 39, 353
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	4 cut(s)	33, 36, 39, 353
HgaI	GACGC	2 cut(s)	92, 279
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	2 cut(s)	55, 262
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HinfI	GANTC	3 cut(s)	58, 193, 215
HphI	GGTGA	3 cut(s)	67, 224, 236
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	3 cut(s)	232, 285, 363
Hpy188III	TCNNGA	7 cut(s)	8, 64, 124, 139, 259, 328, 379
Hpy8I	GTNNAC	1 cut(s)	222
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	3 cut(s)	173, 210, 237
HpyCH4III	ACNGT	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 44, 277
HpyF3I	CTNAG	2 cut(s)	231, 267
Hsp92II	CATG	2 cut(s)	55, 262
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	2 cut(s)	48, 255
LpnPI	CCDG	5 cut(s)	60, 87, 166, 260, 295
Lsp1109I	GCAGC	4 cut(s)	44, 47, 50, 364
LweI	GCATC	2 cut(s)	60, 244
MaeIII	GTNAC	5 cut(s)	26, 109, 242, 272, 325
MalI	GATC	2 cut(s)	50, 257
MboI	GATC	2 cut(s)	48, 255
MboII	GAAGA	2 cut(s)	151, 230
MluCI	AATT	1 cut(s)	331
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	3 cut(s)	336, 357, 366
MseI	TTAA	2 cut(s)	357, 391
MspA1I	CMGCKG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	38, 44, 277
NdeII	GATC	2 cut(s)	48, 255
NlaIII	CATG	2 cut(s)	55, 262
NmuCI	GTSAC	2 cut(s)	242, 325
PagI	TCATGA	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	58, 215
PkrI	GCNGC	4 cut(s)	34, 37, 40, 354
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	2 cut(s)	223, 320
RsaNI	GTAC	2 cut(s)	222, 319
SaqAI	TTAA	2 cut(s)	357, 391
SatI	GCNGC	4 cut(s)	33, 36, 39, 353
Sau3AI	GATC	2 cut(s)	48, 255
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	4 cut(s)	28, 43, 202, 357
SfaNI	GCATC	2 cut(s)	60, 244
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	132
TaqI	TCGA	4 cut(s)	9, 140, 196, 254
TasI	AATT	1 cut(s)	331
TatI	WGTACW	2 cut(s)	221, 318
TfiI	GAWTC	2 cut(s)	58, 215
Tru1I	TTAA	2 cut(s)	357, 391
Tru9I	TTAA	2 cut(s)	357, 391
TseFI	GTSAC	2 cut(s)	242, 325
TseI	GCWGC	4 cut(s)	32, 35, 38, 352
Tsp45I	GTSAC	2 cut(s)	242, 325
TspDTI	ATGAA	1 cut(s)	275
XapI	RAATTY	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.