Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005096

Physical Location & Seq

Genomic Coordinates Forward (+)

62057103 .. 62057498

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG407500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCTCTAGAGTGGGTGGTGCTAGGCTACGCCGCGGGCGCAGAGGCCGTGATGGTCCTCCTCCTCACGCTCCCCGGCCTCGACGGCCTCCGCAAGGGCCTCGTGGCCGTCACGCGCAACCTCCTCAAGCCCTTCCTCTCGGTGGTGCCCTTCTGCCTCTTCCTCCTCATGGACATCTACTGGAAGTACGAGAATCGGCCGAACTGCGACGGCGACTCCTGCACTCCGTCCGAGCACCTCCGCCACCAGAAGTCCATCATGAAGAGCCAGCGCAACGCGCTTCTCATCGCCGCGGCGCTCATCTTCTACTGGCTGCTCTACACCGTCACTCACCTCGTCGTCCGGATCGAGCAGCTGAACCAGAGCGTGGAGCGATTGAAGAAGAATAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.93

Weight (kDa)

9.07

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03160 AT5G17190
fragaria_vesca	FvH4_4g33810
malus_domestica	MD11G1246100.v1.1 MD13G1029700.v1.1 MD16G1020500.v1.1 MD16G1237600.v1.1
prunus_persica	Prupe.1G331700_v2.0.a1
pyrus_communis	pycom13g01810 pycom16g01840
rosa_chinensis	RchiOBHm_Chr4g0443321 RchiOBHm_Chr6g0253461
rosa_multiflora	Rmu_sc0007829.1_g000004 Rmu_ssc0000122.1_g000007
rosa_roxburghii	Rroxscaffold_5G00383900
rosa_rugosa	Rorug04G0345500
rosa_samantha	Rh2AG453500 Rh2AG508000 Rh2CG440600 Rh2CG493300 Rh4BG412100 Rh4BG426800 Rh4CG427500 Rh4DG033000 Rh4DG066100 Rh4DG407500 Rh7AG069700
rosa_wichuraiana	Rw0G022010 Rw2G037020 Rw4G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	367
AccII	CGCG	4 cut(s)	35, 115, 278, 293
AccIII	TCCGGA	1 cut(s)	342
AciI	CCGC	6 cut(s)	33, 35, 91, 241, 291, 293
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	2 cut(s)	105, 197
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	4 cut(s)	94, 142, 169, 367
AgsI	TTSAA	1 cut(s)	379
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw21I	GWGCWC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	353
Aor13HI	TCCGGA	1 cut(s)	342
AoxI	GGCC	6 cut(s)	45, 76, 85, 97, 105, 197
ApeKI	GCWGC	2 cut(s)	313, 352
AspLEI	GCGC	5 cut(s)	41, 117, 273, 280, 298
AspS9I	GGNCC	2 cut(s)	55, 97
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	145
BauI	CACGAG	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	300, 364
BccI	CCATC	2 cut(s)	46, 263
BceAI	ACGGC	4 cut(s)	32, 92, 100, 226
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BcnI	CCSGG	1 cut(s)	75
BfaI	CTAG	2 cut(s)	8, 23
BfoI	RGCGCY	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	84
BisI	GCNGC	5 cut(s)	33, 291, 294, 314, 353
BlsI	GCNGC	5 cut(s)	34, 292, 295, 315, 354
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	55, 97
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	33, 73, 291
BsaWI	WCCGGW	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 142, 169, 367
Bse1I	ACTGG	2 cut(s)	185, 314
BseAI	TCCGGA	1 cut(s)	342
BseDI	CCNNGG	3 cut(s)	33, 73, 291
BseLI	CCNNNNNNNGG	4 cut(s)	94, 142, 169, 367
BseNI	ACTGG	2 cut(s)	185, 314
BseRI	GAGGAG	4 cut(s)	50, 53, 113, 155
BseSI	GKGCMC	1 cut(s)	150
BseX3I	CGGCCG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	300, 364
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	4 cut(s)	35, 115, 278, 293
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	6 cut(s)	47, 78, 87, 99, 107, 199
BshNI	GGYRCC	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	75, 343
BslI	CCNNNNNNNGG	4 cut(s)	94, 142, 169, 367
BsnI	GGCC	6 cut(s)	47, 78, 87, 99, 107, 199
Bsp1286I	GDGCHC	2 cut(s)	150, 237
Bsp13I	TCCGGA	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	345
BspACI	CCGC	6 cut(s)	33, 35, 91, 241, 291, 293
BspANI	GGCC	6 cut(s)	47, 78, 87, 99, 107, 199
BspEI	TCCGGA	1 cut(s)	342
BspFNI	CGCG	4 cut(s)	35, 115, 278, 293
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	1 cut(s)	353
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	185, 314
BssECI	CCNNGG	3 cut(s)	33, 73, 291
BssMI	GATC	1 cut(s)	345
BssSI	CACGAG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	2 cut(s)	164, 257
BstC8I	GCNNGC	2 cut(s)	37, 269
BstDSI	CCRYGG	2 cut(s)	33, 291
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstFNI	CGCG	4 cut(s)	35, 115, 278, 293
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	5 cut(s)	41, 117, 273, 280, 298
BstKTI	GATC	1 cut(s)	348
BstMBI	GATC	1 cut(s)	345
BstMCI	CGRYCG	1 cut(s)	200
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 84, 219, 277
BstSCI	CCNGG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	150
BstUI	CGCG	4 cut(s)	35, 115, 278, 293
BstV1I	GCAGC	2 cut(s)	300, 364
BstZI	CGGCCG	1 cut(s)	197
BsuRI	GGCC	6 cut(s)	47, 78, 87, 99, 107, 199
BtgI	CCRYGG	2 cut(s)	33, 291
BtgZI	GCGATG	1 cut(s)	271
Cac8I	GCNNGC	2 cut(s)	37, 269
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	5 cut(s)	41, 117, 273, 280, 298
Cfr13I	GGNCC	2 cut(s)	55, 97
Cfr42I	CCGCGG	2 cut(s)	36, 294
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	2 cut(s)	169, 259
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
EaeI	YGGCCR	2 cut(s)	105, 197
EagI	CGGCCG	1 cut(s)	197
Eam1104I	CTCTTC	2 cut(s)	164, 257
EarI	CTCTTC	2 cut(s)	164, 257
EciI	GGCGGA	1 cut(s)	230
EclXI	CGGCCG	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	55
Eco52I	CGGCCG	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	97
FaeI	CATG	2 cut(s)	172, 262
FaiI	YATR	2 cut(s)	170, 260
FatI	CATG	2 cut(s)	168, 258
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	5 cut(s)	33, 291, 294, 314, 353
Fsp4HI	GCNGC	5 cut(s)	33, 291, 294, 314, 353
FspBI	CTAG	2 cut(s)	8, 23
GlaI	GCGC	5 cut(s)	40, 116, 272, 279, 297
GluI	GCNGC	5 cut(s)	33, 291, 294, 314, 353
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	6 cut(s)	47, 78, 87, 99, 107, 199
HapII	CCGG	2 cut(s)	75, 343
HhaI	GCGC	5 cut(s)	41, 117, 273, 280, 298
Hin1II	CATG	2 cut(s)	172, 262
Hin6I	GCGC	5 cut(s)	39, 115, 271, 278, 296
HinP1I	GCGC	5 cut(s)	39, 115, 271, 278, 296
HinfI	GANTC	2 cut(s)	193, 215
HpaII	CCGG	2 cut(s)	75, 343
HphI	GGTGA	1 cut(s)	323
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	8, 259, 343
Hpy99I	CGWCG	3 cut(s)	86, 212, 341
HpyAV	CCTTC	2 cut(s)	142, 160
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 84, 219, 277
Hsp92II	CATG	2 cut(s)	172, 262
HspAI	GCGC	5 cut(s)	39, 115, 271, 278, 296
Kpn2I	TCCGGA	1 cut(s)	342
KspI	CCGCGG	2 cut(s)	36, 294
Kzo9I	GATC	1 cut(s)	345
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	2 cut(s)	75, 370
LpnPI	CCDG	8 cut(s)	88, 166, 232, 260, 281, 295, 356, 374
Lsp1109I	GCAGC	2 cut(s)	300, 364
MaeI	CTAG	2 cut(s)	8, 23
MaeIII	GTNAC	2 cut(s)	109, 325
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	5 cut(s)	151, 274, 295, 391, 394
MhlI	GDGCHC	2 cut(s)	150, 237
MlyI	GAGTC	1 cut(s)	209
MroI	TCCGGA	1 cut(s)	342
MspA1I	CMGCKG	3 cut(s)	35, 293, 355
MspI	CCGG	2 cut(s)	75, 343
MspR9I	CCNGG	1 cut(s)	75
MvnI	CGCG	4 cut(s)	35, 115, 278, 293
MwoI	GCNNNNNNNGC	4 cut(s)	38, 84, 219, 277
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	2 cut(s)	172, 262
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	2 cut(s)	109, 325
PagI	TCATGA	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	193
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	5 cut(s)	34, 292, 295, 315, 354
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	2 cut(s)	55, 97
PvuII	CAGCTG	1 cut(s)	355
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SacII	CCGCGG	2 cut(s)	36, 294
SapI	GCTCTTC	1 cut(s)	257
SatI	GCNGC	5 cut(s)	33, 291, 294, 314, 353
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	2 cut(s)	55, 97
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	2 cut(s)	150, 237
SetI	ASST	4 cut(s)	123, 240, 336, 357
SfiI	GGCCNNNNNGGCC	1 cut(s)	84
Sfr303I	CCGCGG	2 cut(s)	36, 294
SgrBI	CCGCGG	2 cut(s)	36, 294
SinI	GGWCC	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SsiI	CCGC	6 cut(s)	33, 35, 91, 241, 291, 293
SspMI	CTAG	2 cut(s)	8, 23
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	2 cut(s)	81, 348
TauI	GCSGC	3 cut(s)	35, 293, 296
TfiI	GAWTC	1 cut(s)	193
TseFI	GTSAC	2 cut(s)	109, 325
TseI	GCWGC	2 cut(s)	313, 352
Tsp45I	GTSAC	2 cut(s)	109, 325
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	1 cut(s)	216
Van91I	CCANNNNNTGG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	92
XbaI	TCTAGA	1 cut(s)	7
XspI	CTAG	2 cut(s)	8, 23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.