Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005096

Physical Location & Seq

Genomic Coordinates Forward (+)

4893247 .. 4893429

Gene Structure 183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG069700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGCTTTAGAATGGGTGGTGCTAGGCTACGCCGCCGGCGTAGAGGCCGTGGTGATCCTCCTCTTCATGCTCGACGGCCACTACAAGGGCCTCGTGGCTGTCACGCGCAATCTCCTCAAGCCGTTCCTCTCGGTGGTGCCCTTTTGCCTCTTCCTCCTTGTTGCTGAGATAATCTTTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

60

Amino Acids

6.62

Weight (kDa)

5.51

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03160 AT5G17190
fragaria_vesca	FvH4_4g33810
malus_domestica	MD11G1246100.v1.1 MD13G1029700.v1.1 MD16G1020500.v1.1 MD16G1237600.v1.1
prunus_persica	Prupe.1G331700_v2.0.a1
pyrus_communis	pycom13g01810 pycom16g01840
rosa_chinensis	RchiOBHm_Chr4g0443321 RchiOBHm_Chr6g0253461
rosa_multiflora	Rmu_sc0007829.1_g000004 Rmu_ssc0000122.1_g000007
rosa_roxburghii	Rroxscaffold_5G00383900
rosa_rugosa	Rorug04G0345500
rosa_samantha	Rh2AG453500 Rh2AG508000 Rh2CG440600 Rh2CG493300 Rh4BG412100 Rh4BG426800 Rh4CG427500 Rh4DG033000 Rh4DG066100 Rh4DG407500 Rh7AG069700
rosa_wichuraiana	Rw0G022010 Rw2G037020 Rw4G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AccII	CGCG	1 cut(s)	106
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	76
AfiI	CCNNNNNNNGG	2 cut(s)	85, 133
AlwI	GGATC	1 cut(s)	49
AoxI	GGCC	3 cut(s)	45, 76, 88
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	136
BauI	CACGAG	1 cut(s)	92
BceAI	ACGGC	3 cut(s)	32, 91, 106
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 133
Bse118I	RCCGGY	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	85, 133
BseMII	CTCAG	1 cut(s)	156
BseRI	GAGGAG	2 cut(s)	50, 104
BseSI	GKGCMC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	106
BshFI	GGCC	3 cut(s)	47, 78, 90
BshNI	GGYRCC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	85, 133
BsnI	GGCC	3 cut(s)	47, 78, 90
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	3 cut(s)	47, 78, 90
BspCNI	CTCAG	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	54
BssSI	CACGAG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	92
Bst6I	CTCTTC	2 cut(s)	68, 155
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	165
BstDSI	CCRYGG	1 cut(s)	48
BstFNI	CGCG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	141
BstUI	CGCG	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	47, 78, 90
BtgI	CCRYGG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	1 cut(s)	108
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	88
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	7 cut(s)	5, 27, 47, 78, 90, 98, 121
CviKI_1	RGCY	7 cut(s)	5, 27, 47, 78, 90, 98, 121
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	2 cut(s)	68, 155
EarI	CTCTTC	2 cut(s)	68, 155
EcoO109I	RGGNCCY	1 cut(s)	88
FaeI	CATG	1 cut(s)	70
FaiI	YATR	2 cut(s)	68, 181
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	3 cut(s)	47, 78, 90
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	1 cut(s)	106
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	54
LpnPI	CCDG	1 cut(s)	49
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	2 cut(s)	55, 142
MhlI	GDGCHC	1 cut(s)	141
MnlI	CCTC	8 cut(s)	37, 68, 71, 101, 125, 137, 158, 164
MreI	CGCCGGCG	1 cut(s)	35
MroNI	GCCGGC	1 cut(s)	35
MspI	CCGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	106
NaeI	GCCGGC	1 cut(s)	37
NdeII	GATC	1 cut(s)	54
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdiI	GCCGGC	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	88
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	141
SgrAI	CRCCGGYG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	23
TaqI	TCGA	1 cut(s)	72
TauI	GCSGC	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	55
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.